[med-svn] [dnaclust] branch master updated (8210ec6 -> 534b156)

[Andreas Tille]

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tille pushed a change to branch master
in repository dnaclust.

      from  8210ec6   d/copyright in DEP5
       new  4fcb863   Imported Upstream version 3
       new  534b156   Merge tag 'upstream/3'

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Summary of changes:
 Makefile                  |   30 +
 Makefile.OSX              |   29 +
 README                    |   26 +
 debian/changelog          |    5 -
 debian/compat             |    1 -
 debian/control            |   23 -
 debian/copyright          |   25 -
 debian/rules              |   24 -
 debian/source/format      |    1 -
 debian/upstream           |   12 -
 debian/watch              |    2 -
 dnaclust-abun.sh          |   74 ++
 dnaclust-ref              |   98 ++
 dnaclust.cpp              | 2188 +++++++++++++++++++++++++++++++++++++++++++++
 fasta.cpp                 |   80 ++
 fasta.hpp                 |   35 +
 fastaselect.cpp           |  115 +++
 fastasort.cpp             |   69 ++
 find-large-clusters       |   94 ++
 generate_test_clusters.sh |   15 +
 multi_dim.hpp             |  156 ++++
 search_include.cpp        |  209 +++++
 star-align                |   44 +
 ternary_sort.hpp          |   58 ++
 utility.hpp               |   20 +
 25 files changed, 3340 insertions(+), 93 deletions(-)
 create mode 100644 Makefile
 create mode 100644 Makefile.OSX
 create mode 100644 README
 delete mode 100644 debian/changelog
 delete mode 100644 debian/compat
 delete mode 100644 debian/control
 delete mode 100644 debian/copyright
 delete mode 100755 debian/rules
 delete mode 100644 debian/source/format
 delete mode 100644 debian/upstream
 delete mode 100644 debian/watch
 create mode 100644 dnaclust-abun.sh
 create mode 100755 dnaclust-ref
 create mode 100644 dnaclust.cpp
 create mode 100644 fasta.cpp
 create mode 100644 fasta.hpp
 create mode 100644 fastaselect.cpp
 create mode 100644 fastasort.cpp
 create mode 100755 find-large-clusters
 create mode 100755 generate_test_clusters.sh
 create mode 100644 multi_dim.hpp
 create mode 100644 search_include.cpp
 create mode 100755 star-align
 create mode 100644 ternary_sort.hpp
 create mode 100644 utility.hpp

-- 
Alioth's /git/debian-med/git-commit-notice on /srv/git.debian.org/git/debian-med/dnaclust.git