[med-svn] [dnaclust] 02/02: Merge tag 'upstream/3'

[Andreas Tille]

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tille pushed a commit to branch master
in repository dnaclust.

commit 534b156d4605d8fbee2ba25b5618ea5e52ba6a18
Merge: 8210ec6 4fcb863
Author: Andreas Tille <tille at debian.org>
Date:   Sat Feb 1 17:08:39 2014 +0100

    Merge tag 'upstream/3'
    
    Upstream version 3

 Makefile                  |   30 +
 Makefile.OSX              |   29 +
 README                    |   26 +
 debian/changelog          |    5 -
 debian/compat             |    1 -
 debian/control            |   23 -
 debian/copyright          |   25 -
 debian/rules              |   24 -
 debian/source/format      |    1 -
 debian/upstream           |   12 -
 debian/watch              |    2 -
 dnaclust-abun.sh          |   74 ++
 dnaclust-ref              |   98 ++
 dnaclust.cpp              | 2188 +++++++++++++++++++++++++++++++++++++++++++++
 fasta.cpp                 |   80 ++
 fasta.hpp                 |   35 +
 fastaselect.cpp           |  115 +++
 fastasort.cpp             |   69 ++
 find-large-clusters       |   94 ++
 generate_test_clusters.sh |   15 +
 multi_dim.hpp             |  156 ++++
 search_include.cpp        |  209 +++++
 star-align                |   44 +
 ternary_sort.hpp          |   58 ++
 utility.hpp               |   20 +
 25 files changed, 3340 insertions(+), 93 deletions(-)

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