[med-svn] [fastaq] 02/03: Second initial commit to ensure lower case of debian package

[Jorge Soares]

This is an automated email from the git hooks/post-receive script.

jssoares-guest pushed a commit to branch master
in repository fastaq.

commit 23d8b27279eaea3c61670c02dee7b42ab997c530
Author: Jorge Soares <j.s.soares at gmail.com>
Date:   Sun Feb 2 11:52:25 2014 +0000

    Second initial commit to ensure lower case of debian package
---
 debian/changelog |  5 +++++
 debian/compat    |  1 +
 debian/control   | 27 +++++++++++++++++++++++++++
 debian/control~  | 19 +++++++++++++++++++
 debian/copyright | 11 +++++++++++
 debian/rules     | 23 +++++++++++++++++++++++
 debian/upstream  | 12 ++++++++++++
 debian/watch     |  3 +++
 8 files changed, 101 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..a5388a4
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+Fastaq (0.1-1) UNRELEASED; urgency=low
+
+  * Initial release (Closes: #<bug>)
+
+ -- DMPT <debian-med-packaging at lists.alioth.debian.org>  Thu, 24 May 2012 14:30:13 +0200
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..a3ab81c
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,27 @@
+Source: Fastaq
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>, Jorge Soares <j.s.soares at gmail.com>
+Build-Depends: debhelper (>= 9),
+	       python3,
+	       python3-setuptools,
+               samtools
+	       asciidoc
+Standards-Version: 3.9.5
+Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/fastaq.git
+Vcs-Svn: git://anonscm.debian.org/debian-med/fastaq.git
+Homepage: https://github.com/js21/Fastaq
+
+Package: Fastaq
+Architecture: any
+Depends: ${shlibs:Depends},
+         ${misc:Depends},
+Description: Python3 scripts to manipulate FASTA and FASTQ files, plus API for developers
+ All scripts automatically detect whether the input is a FASTA or FASTQ file.
+ .
+ Input and output files can be gzipped. An input file is assumed to be gzipped if its name ends with .gz. To gzip an output file, just name it with .gz at the end.
+ .
+ You can use a minus sign for a filename to use stdin or stdout, so scripts can be piped together.
+ .
+ A developper API is also provided by this package. There are plenty of examples in tasks.py
\ No newline at end of file
diff --git a/debian/control~ b/debian/control~
new file mode 100644
index 0000000..64811a7
--- /dev/null
+++ b/debian/control~
@@ -0,0 +1,19 @@
+Source: Fastaq
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9)
+Standards-Version: 3.9.5
+Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/Fastaq.git
+Vcs-Svn: git://anonscm.debian.org/debian-med/Fastaq.git
+Homepage: https://github.com/sanger-pathogens/Fastaq
+
+Package: Fastaq
+Architecture: any
+Depends: ${shlibs:Depends},
+         ${misc:Depends},
+	 python3,
+	 python3-setuptools,
+         samtools
+Description: Python3 scripts to manipulate FASTA and FASTQ files, plus API for developers
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..4e27a1f
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,11 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: <pkg>
+Source: <path_to_download>
+
+Files: *
+Copyright: © 20xx-20yy <upstream>
+License: <license>
+
+Files: debian/*
+Copyright: © 2012 Andreas Tille <tille at debian.org>
+License: <license>
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..58ec00b
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,23 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+
+# some helpful variables - uncomment them if needed
+# shamelessly stolen from http://jmtd.net/log/awk/
+#DEBVERS        := $(shell dpkg-parsechangelog | awk '/^Version:/ {print $$2}')
+#VERSION        := $(shell echo '$(DEBVERS)' | sed -e 's/^[0-9]*://' -e 's/-.*//')
+#DEBFLAVOR      := $(shell dpkg-parsechangelog | awk '/^Distribution:/ {print $$2}')
+#DEBPKGNAME     := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
+#DEBIAN_BRANCH  := $(shell awk 'BEGIN{FS="[= ]+"} /debian-branch/ {print $$2}' debian/gbp.conf)
+#GIT_TAG        := $(subst ~,_,$(VERSION))
+
+# alternatively to manually set those variables you can
+#  include /usr/share/cdbs/1/rules/buildvars.mk
+# and use what is set there.  Any hint whether dh might set variables in
+# a similar manner are welcome.
+
+%:
+	dh $@
+
+#get-orig-source:
+#	. debian/get-orig-source
diff --git a/debian/upstream b/debian/upstream
new file mode 100644
index 0000000..d8b5812
--- /dev/null
+++ b/debian/upstream
@@ -0,0 +1,12 @@
+Reference:
+  Author: 
+  Title: 
+  Journal: 
+  Year: 
+  Volume: 
+  Number: 
+  Pages: 
+  DOI: 
+  PMID:
+  URL: 
+  eprint: 
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..500f24f
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=3
+https://github.com/js21/Fastaq/tags \
+   /js21/Fastaq/archive/([.\d]+)\.tar\.gz
\ No newline at end of file

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