[med-svn] r16002 - trunk/packages/spades/trunk/debian

[Andreas Tille]

Author: tille
Date: 2014-02-05 15:00:01 +0000 (Wed, 05 Feb 2014)
New Revision: 16002

Modified:
   trunk/packages/spades/trunk/debian/control
   trunk/packages/spades/trunk/debian/rules
   trunk/packages/spades/trunk/debian/watch
Log:
Thanks to gregor hermann for the hint to the watch file


Modified: trunk/packages/spades/trunk/debian/control
===================================================================
--- trunk/packages/spades/trunk/debian/control	2014-02-05 14:39:00 UTC (rev 16001)
+++ trunk/packages/spades/trunk/debian/control	2014-02-05 15:00:01 UTC (rev 16002)
@@ -1,9 +1,11 @@
 Source: spades
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
 Section: science
 Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Andreas Tille <tille at debian.org>
-Build-Depends: debhelper (>= 9)
+Build-Depends: debhelper (>= 9),
+               cmake,
+               zlib1g-dev
 Standards-Version: 3.9.5
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/spades/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/spades/trunk/
@@ -11,7 +13,8 @@
 
 Package: spades
 Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}
+Depends: ${shlibs:Depends},
+         ${misc:Depends}
 Description: genome assembler for single-cell and isolates data sets
  The SPAdes – St. Petersburg genome assembler is intended for both
  standard isolates and single-cell MDA bacteria assemblies.  It works

Modified: trunk/packages/spades/trunk/debian/rules
===================================================================
--- trunk/packages/spades/trunk/debian/rules	2014-02-05 14:39:00 UTC (rev 16001)
+++ trunk/packages/spades/trunk/debian/rules	2014-02-05 15:00:01 UTC (rev 16002)
@@ -16,8 +16,18 @@
 # and use what is set there.  Any hint whether dh might set variables in
 # a similar manner are welcome.
 
+PREFIX:=/usr
+BUILD_DIR:=build_spades
+
 %:
-	dh $@
+	dh $@ --sourcedirectory=src --buildsystem=cmake
 
-#get-orig-source:
-#	. debian/get-orig-source
+override_dh_auto_clean:
+	dh_auto_clean
+#	rm -rf $(BUILD_DIR)
+
+xxx_override_dh_auto_build:
+	mkdir -p $(BUILD_DIR)
+	cd $(BUILD_DIR)
+	cmake -G "Unix Makefiles" -DCMAKE_INSTALL_PREFIX=$(PREFIX) $(CURDIR)/src $*
+	make -j 8

Modified: trunk/packages/spades/trunk/debian/watch
===================================================================
--- trunk/packages/spades/trunk/debian/watch	2014-02-05 14:39:00 UTC (rev 16001)
+++ trunk/packages/spades/trunk/debian/watch	2014-02-05 15:00:01 UTC (rev 16002)
@@ -1,6 +1,3 @@
 version=3
-#  does not work yet
-#opts=downloadurlmangle=s/release($([\d.]+)\//&SPAdes-$1.tar.gz/ \
-#   http://spades.bioinf.spbau.ru/release([\d.]+)/
-#
-#  http://spades.bioinf.spbau.ru/release3.0.0/SPAdes-3.0.0.tar.gz
\ No newline at end of file
+opts="downloadurlmangle=s{release([\d.]+)/}{release${1}/SPAdes-${1}.tar.gz},filenamemangle=s{release([\d.]+)/}{SPAdes-${1}.tar.gz}" \
+  http://spades.bioinf.spbau.ru/ release([\d.]+)/