[med-svn] [r-bioc-limma] branch master updated (8ae68ad -> de0515e)

[Charles Plessy]

This is an automated email from the git hooks/post-receive script.

plessy pushed a change to branch master
in repository r-bioc-limma.

      from  8ae68ad   Needs r-cran-locfit (svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-locfit/trunk/)
       new  c3b46aa   Imported Upstream version 3.18.10~dfsg
       new  daf197c   Merge tag 'upstream/3.18.10_dfsg'
       new  8008552   New upstream release with no new copyright nor license notice.
       new  de0515e   Remove XS- in front of Testsuite.

The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DESCRIPTION                   |   6 +-
 R/ebayes.R                    |   7 +-
 R/geneset-roast.R             | 115 ++++++++++------
 R/lmfit.R                     |  30 ++--
 R/read-ilmn.R                 |   7 +-
 R/subsetting.R                | 311 ++++++++++++++++--------------------------
 R/toptable.R                  |  22 ++-
 R/treat.R                     | 106 +-------------
 R/venn.R                      |   8 +-
 debian/changelog              |   7 +-
 debian/control                |   2 +-
 debian/copyright              |   2 +-
 inst/doc/changelog.txt        |  53 +++++++
 inst/doc/intro.pdf            | Bin 46191 -> 46191 bytes
 man/camera.Rd                 |   5 +-
 man/ebayes.Rd                 |   2 +-
 man/normalizebetweenarrays.Rd |   2 +-
 man/roast.Rd                  |   4 +-
 man/subsetting.Rd             |  31 +++--
 man/voom.Rd                   |   8 +-
 tests/limma-Tests.R           |   6 +-
 tests/limma-Tests.Rout.save   |  58 +++++---
 22 files changed, 379 insertions(+), 413 deletions(-)

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