[med-svn] [r-bioc-limma] 02/04: Merge tag 'upstream/3.18.10_dfsg'

[Charles Plessy]

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plessy pushed a commit to branch master
in repository r-bioc-limma.

commit daf197c930e80cdefd4b034c1e1e7c88812ea2fd
Merge: 8ae68ad c3b46aa
Author: Charles Plessy <plessy at debian.org>
Date:   Thu Feb 6 19:51:35 2014 +0900

    Merge tag 'upstream/3.18.10_dfsg'
    
    Upstream version 3.18.10~dfsg
    
    # gpg: Signature made Thu 06 Feb 2014 19:51:30 JST using RSA key ID B3443334
    # gpg: Good signature from "Charles Plessy <plessy at riken.jp>"

 DESCRIPTION                   |   6 +-
 R/ebayes.R                    |   7 +-
 R/geneset-roast.R             | 115 ++++++++++------
 R/lmfit.R                     |  30 ++--
 R/read-ilmn.R                 |   7 +-
 R/subsetting.R                | 311 ++++++++++++++++--------------------------
 R/toptable.R                  |  22 ++-
 R/treat.R                     | 106 +-------------
 R/venn.R                      |   8 +-
 inst/doc/changelog.txt        |  53 +++++++
 inst/doc/intro.pdf            | Bin 46191 -> 46191 bytes
 man/camera.Rd                 |   5 +-
 man/ebayes.Rd                 |   2 +-
 man/normalizebetweenarrays.Rd |   2 +-
 man/roast.Rd                  |   4 +-
 man/subsetting.Rd             |  31 +++--
 man/voom.Rd                   |   8 +-
 tests/limma-Tests.R           |   6 +-
 tests/limma-Tests.Rout.save   |  58 +++++---
 19 files changed, 372 insertions(+), 409 deletions(-)

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