[med-svn] r16013 - in trunk/packages/logol/tags: . 1.6.10-1/debian 1.6.10-1/debian/patches

Olivier Sallou osallou at moszumanska.debian.org
Sat Feb 8 12:25:37 UTC 2014


Author: osallou
Date: 2014-02-08 12:25:37 +0000 (Sat, 08 Feb 2014)
New Revision: 16013

Added:
   trunk/packages/logol/tags/1.6.10-1/
   trunk/packages/logol/tags/1.6.10-1/debian/changelog
   trunk/packages/logol/tags/1.6.10-1/debian/patches/remove_rubygems_usage
   trunk/packages/logol/tags/1.6.10-1/debian/patches/series
Removed:
   trunk/packages/logol/tags/1.6.10-1/debian/changelog
   trunk/packages/logol/tags/1.6.10-1/debian/patches/remove_rubygems_usage
   trunk/packages/logol/tags/1.6.10-1/debian/patches/series
Log:
[svn-buildpackage] Tagging logol 1.6.10-1

Deleted: trunk/packages/logol/tags/1.6.10-1/debian/changelog
===================================================================
--- trunk/packages/logol/trunk/debian/changelog	2014-02-08 08:18:07 UTC (rev 16010)
+++ trunk/packages/logol/tags/1.6.10-1/debian/changelog	2014-02-08 12:25:37 UTC (rev 16013)
@@ -1,120 +0,0 @@
-logol (1.6.9-3) unstable; urgency=low
-
-  * d/control,d/patches: Remove rubygems dependency, thanks to
-    Cédric Boutillier <boutil at debian.org> (Closes: #735579).
-  * Upgrade to Standards 3.9.5.
-
- -- Olivier Sallou <osallou at debian.org>  Fri, 17 Jan 2014 09:07:38 +0100
-
-logol (1.6.9-2) unstable; urgency=low
-
-  * Fix prolog doc generation (Closes: #730916).
-
- -- Olivier Sallou <osallou at debian.org>  Sun, 01 Dec 2013 11:55:42 +0100
-
-logol (1.6.9-1) unstable; urgency=low
-
-  * New upstream release (bug fixes, add Windows support
-    for Sicstus 4.2.x and Swi-prolog).
-
- -- Olivier Sallou <osallou at debian.org>  Mon, 11 Nov 2013 10:11:17 +0100
-
-logol (1.6.6-1) unstable; urgency=low
-
-  * New upstream releas (bug fixes on morphisms and doc).
-
- -- Olivier Sallou <osallou at debian.org>  Wed, 30 Oct 2013 16:21:09 +0100
-
-logol (1.6.5-1) unstable; urgency=low
-
-  * New upstream release (memory footprint optimisation in some cases).
-
- -- Olivier Sallou <osallou at debian.org>  Fri, 25 Oct 2013 13:48:22 +0200
-
-logol (1.6.4-1) unstable; urgency=low
-
-  * New upstream release fixing bugs
-
- -- Olivier Sallou <osallou at debian.org>  Tue, 22 Oct 2013 08:35:45 +0200
-
-logol (1.6.3-1) unstable; urgency=low
-
-  * New upstream release fixing important bugs on distance search
-  * Remove patch for doc generation after swi-prolog fix 
-
- -- Olivier Sallou <osallou at debian.org>  Mon, 02 Sep 2013 08:54:46 +0200
-
-logol (1.6.2-3) unstable; urgency=low
-
-  * Fix swi-prolog compilation (Closes: #719030).
-
- -- Olivier Sallou <osallou at debian.org>  Thu, 08 Aug 2013 10:30:12 +0200
-
-logol (1.6.2-2) unstable; urgency=low
-
-  [ Olivier Sallou ]
-  * Remove deprecated DM-Upload field.
-
-  [ Dmitrijs Ledkovs ]
-  * Bump standards version to 3.9.4.
-  * Remove empty postinst script.
-  * Add dependancy on texlive-latex-extra, needed to fix documentation
-    FTBFS with new TeX Live.
-
- -- Dmitrijs Ledkovs <dmitrij.ledkov at ubuntu.com>  Mon, 03 Jun 2013 23:36:49 +0100
-
-logol (1.6.2-1) unstable; urgency=low
-
-  * New upstream release (bug fixes)
-
- -- Olivier Sallou <osallou at debian.org>  Fri, 24 May 2013 14:37:24 +0200
-
-logol (1.6.1-1) unstable; urgency=low
-
-  * New upstream release (bug fixes) 
-
- -- Olivier Sallou <osallou at debian.org>  Tue, 09 Apr 2013 16:57:33 +0200
-
-logol (1.6.0-1) unstable; urgency=low
-
-  * New upstream release with bug fixes 
-
- -- Olivier Sallou <osallou at debian.org>  Fri, 15 Feb 2013 10:05:50 +0100
-
-logol (1.5.0-6) unstable; urgency=low
-
-  [ Olivier Sallou ]
-  * debian/control: Fix typo in description (Closes: #685079). 
-    Thanks to Erik Esterer <erik.esterer at gmail.com>
-
- -- Olivier Sallou <osallou at debian.org>  Fri, 17 Aug 2012 08:00:58 +0200
-
-logol (1.5.0-5) unstable; urgency=low
-
-  [ Olivier Sallou]
-  * Transition package to use default java implementation:
-    From james.page at ubuntu.com (Closes: #684158)
-    - d/control: BD on default-jdk (>= 1:1.6), switch runtime dependency
-      to default-jre | java6-runtime.
-    - d/rules: Specify source/target = 1.5 to ensure backwards compatible
-      bytecode is built.
-
- -- Olivier Sallou <osallou at debian.org>  Tue, 07 Aug 2012 15:18:43 +0200
-
-logol (1.5.0-4) unstable; urgency=low
-
-  * debian/postinst: remove directory permissions (Closes: #683647). 
-
- -- Olivier Sallou <osallou at debian.org>  Thu, 02 Aug 2012 17:09:31 +0200
-
-logol (1.5.0-2) unstable; urgency=low
-
-  * Support Arch dependent and arch independent separate builds.
-
- -- Olivier Sallou <osallou at debian.org>  Sun, 01 Jul 2012 23:49:16 +0200
-
-logol (1.5.0-1) unstable; urgency=low
-
-  * Initial release (Closes: #678373).
-
- -- Olivier Sallou <osallou at debian.org>  Thu, 21 Jun 2012 12:50:22 +0200

Copied: trunk/packages/logol/tags/1.6.10-1/debian/changelog (from rev 16011, trunk/packages/logol/trunk/debian/changelog)
===================================================================
--- trunk/packages/logol/tags/1.6.10-1/debian/changelog	                        (rev 0)
+++ trunk/packages/logol/tags/1.6.10-1/debian/changelog	2014-02-08 12:25:37 UTC (rev 16013)
@@ -0,0 +1,126 @@
+logol (1.6.10-1) unstable; urgency=low
+
+  * New upstream release, fix bug on Hamming error search 
+
+ -- Olivier Sallou <osallou at debian.org>  Sat, 08 Feb 2014 13:17:17 +0100
+
+logol (1.6.9-3) unstable; urgency=low
+
+  * d/control,d/patches: Remove rubygems dependency, thanks to
+    Cédric Boutillier <boutil at debian.org> (Closes: #735579).
+  * Upgrade to Standards 3.9.5.
+
+ -- Olivier Sallou <osallou at debian.org>  Fri, 17 Jan 2014 09:07:38 +0100
+
+logol (1.6.9-2) unstable; urgency=low
+
+  * Fix prolog doc generation (Closes: #730916).
+
+ -- Olivier Sallou <osallou at debian.org>  Sun, 01 Dec 2013 11:55:42 +0100
+
+logol (1.6.9-1) unstable; urgency=low
+
+  * New upstream release (bug fixes, add Windows support
+    for Sicstus 4.2.x and Swi-prolog).
+
+ -- Olivier Sallou <osallou at debian.org>  Mon, 11 Nov 2013 10:11:17 +0100
+
+logol (1.6.6-1) unstable; urgency=low
+
+  * New upstream releas (bug fixes on morphisms and doc).
+
+ -- Olivier Sallou <osallou at debian.org>  Wed, 30 Oct 2013 16:21:09 +0100
+
+logol (1.6.5-1) unstable; urgency=low
+
+  * New upstream release (memory footprint optimisation in some cases).
+
+ -- Olivier Sallou <osallou at debian.org>  Fri, 25 Oct 2013 13:48:22 +0200
+
+logol (1.6.4-1) unstable; urgency=low
+
+  * New upstream release fixing bugs
+
+ -- Olivier Sallou <osallou at debian.org>  Tue, 22 Oct 2013 08:35:45 +0200
+
+logol (1.6.3-1) unstable; urgency=low
+
+  * New upstream release fixing important bugs on distance search
+  * Remove patch for doc generation after swi-prolog fix 
+
+ -- Olivier Sallou <osallou at debian.org>  Mon, 02 Sep 2013 08:54:46 +0200
+
+logol (1.6.2-3) unstable; urgency=low
+
+  * Fix swi-prolog compilation (Closes: #719030).
+
+ -- Olivier Sallou <osallou at debian.org>  Thu, 08 Aug 2013 10:30:12 +0200
+
+logol (1.6.2-2) unstable; urgency=low
+
+  [ Olivier Sallou ]
+  * Remove deprecated DM-Upload field.
+
+  [ Dmitrijs Ledkovs ]
+  * Bump standards version to 3.9.4.
+  * Remove empty postinst script.
+  * Add dependancy on texlive-latex-extra, needed to fix documentation
+    FTBFS with new TeX Live.
+
+ -- Dmitrijs Ledkovs <dmitrij.ledkov at ubuntu.com>  Mon, 03 Jun 2013 23:36:49 +0100
+
+logol (1.6.2-1) unstable; urgency=low
+
+  * New upstream release (bug fixes)
+
+ -- Olivier Sallou <osallou at debian.org>  Fri, 24 May 2013 14:37:24 +0200
+
+logol (1.6.1-1) unstable; urgency=low
+
+  * New upstream release (bug fixes) 
+
+ -- Olivier Sallou <osallou at debian.org>  Tue, 09 Apr 2013 16:57:33 +0200
+
+logol (1.6.0-1) unstable; urgency=low
+
+  * New upstream release with bug fixes 
+
+ -- Olivier Sallou <osallou at debian.org>  Fri, 15 Feb 2013 10:05:50 +0100
+
+logol (1.5.0-6) unstable; urgency=low
+
+  [ Olivier Sallou ]
+  * debian/control: Fix typo in description (Closes: #685079). 
+    Thanks to Erik Esterer <erik.esterer at gmail.com>
+
+ -- Olivier Sallou <osallou at debian.org>  Fri, 17 Aug 2012 08:00:58 +0200
+
+logol (1.5.0-5) unstable; urgency=low
+
+  [ Olivier Sallou]
+  * Transition package to use default java implementation:
+    From james.page at ubuntu.com (Closes: #684158)
+    - d/control: BD on default-jdk (>= 1:1.6), switch runtime dependency
+      to default-jre | java6-runtime.
+    - d/rules: Specify source/target = 1.5 to ensure backwards compatible
+      bytecode is built.
+
+ -- Olivier Sallou <osallou at debian.org>  Tue, 07 Aug 2012 15:18:43 +0200
+
+logol (1.5.0-4) unstable; urgency=low
+
+  * debian/postinst: remove directory permissions (Closes: #683647). 
+
+ -- Olivier Sallou <osallou at debian.org>  Thu, 02 Aug 2012 17:09:31 +0200
+
+logol (1.5.0-2) unstable; urgency=low
+
+  * Support Arch dependent and arch independent separate builds.
+
+ -- Olivier Sallou <osallou at debian.org>  Sun, 01 Jul 2012 23:49:16 +0200
+
+logol (1.5.0-1) unstable; urgency=low
+
+  * Initial release (Closes: #678373).
+
+ -- Olivier Sallou <osallou at debian.org>  Thu, 21 Jun 2012 12:50:22 +0200

Deleted: trunk/packages/logol/tags/1.6.10-1/debian/patches/remove_rubygems_usage
===================================================================
--- trunk/packages/logol/trunk/debian/patches/remove_rubygems_usage	2014-02-08 08:18:07 UTC (rev 16010)
+++ trunk/packages/logol/tags/1.6.10-1/debian/patches/remove_rubygems_usage	2014-02-08 12:25:37 UTC (rev 16013)
@@ -1,28 +0,0 @@
-Subject: Remove explicit use of rubygems
-Description:  Supported version of Ruby in Jessie+ are higher that 1.9
- and they all automatically load rubygems
-Author: Cédric Boutillier <boutil at debian.org>
-Last-Update: 2014-01-16
-
---- a/tools/logolIndex.rb
-+++ b/tools/logolIndex.rb
-@@ -1,5 +1,4 @@
- #!/usr/bin/env ruby
--require 'rubygems'
- require 'optparse'
- require 'logger'
- require 'cassiopee-mt'
---- a/tools/logolSearch.rb
-+++ b/tools/logolSearch.rb
-@@ -22,9 +22,9 @@
- DIR=File.expand_path(File.dirname(__FILE__))
- 
- if muteOnly == 1
--  cmd = "ruby -rubygems "+DIR+"/logolIndex.rb --search "+sequence+".index --min "+minStart+" --max "+maxStart+" --pattern "+motifFileName+" --error "+nbError+" --hamming"
-+  cmd = "ruby "+DIR+"/logolIndex.rb --search "+sequence+".index --min "+minStart+" --max "+maxStart+" --pattern "+motifFileName+" --error "+nbError+" --hamming"
- else
--  cmd = "ruby -rubygems "+DIR+"/logolIndex.rb --search "+sequence+".index --min "+minStart+" --max "+maxStart+" --pattern "+motifFileName+" --error "+nbError
-+  cmd = "ruby "+DIR+"/logolIndex.rb --search "+sequence+".index --min "+minStart+" --max "+maxStart+" --pattern "+motifFileName+" --error "+nbError
- end
- 
- Open3.popen3(cmd) do |stdin,stdout,stderr, wait_thr|

Copied: trunk/packages/logol/tags/1.6.10-1/debian/patches/remove_rubygems_usage (from rev 16012, trunk/packages/logol/trunk/debian/patches/remove_rubygems_usage)
===================================================================
--- trunk/packages/logol/tags/1.6.10-1/debian/patches/remove_rubygems_usage	                        (rev 0)
+++ trunk/packages/logol/tags/1.6.10-1/debian/patches/remove_rubygems_usage	2014-02-08 12:25:37 UTC (rev 16013)
@@ -0,0 +1,28 @@
+Subject: Remove explicit use of rubygems
+Description:  Supported version of Ruby in Jessie+ are higher that 1.9
+ and they all automatically load rubygems
+Author: Cédric Boutillier <boutil at debian.org>
+Last-Update: 2014-01-16
+
+--- a/tools/logolIndex.rb
++++ b/tools/logolIndex.rb
+@@ -1,5 +1,4 @@
+ #!/usr/bin/env ruby
+-require 'rubygems'
+ require 'optparse'
+ require 'logger'
+ require 'cassiopee-mt'
+--- a/tools/logolSearch.rb
++++ b/tools/logolSearch.rb
+@@ -22,9 +22,9 @@
+ DIR=File.expand_path(File.dirname(__FILE__))
+ 
+ if muteOnly.to_i == 1
+-  cmd = "ruby -rubygems "+DIR+"/logolIndex.rb --search "+sequence+".index --min "+minStart+" --max "+maxStart+" --pattern "+motifFileName+" --error "+nbError+" --hamming"
++  cmd = "ruby "+DIR+"/logolIndex.rb --search "+sequence+".index --min "+minStart+" --max "+maxStart+" --pattern "+motifFileName+" --error "+nbError+" --hamming"
+ else
+-  cmd = "ruby -rubygems "+DIR+"/logolIndex.rb --search "+sequence+".index --min "+minStart+" --max "+maxStart+" --pattern "+motifFileName+" --error "+nbError
++  cmd = "ruby "+DIR+"/logolIndex.rb --search "+sequence+".index --min "+minStart+" --max "+maxStart+" --pattern "+motifFileName+" --error "+nbError
+ end
+ 
+ Open3.popen3(cmd) do |stdin,stdout,stderr, wait_thr|

Deleted: trunk/packages/logol/tags/1.6.10-1/debian/patches/series
===================================================================
--- trunk/packages/logol/trunk/debian/patches/series	2014-02-08 08:18:07 UTC (rev 16010)
+++ trunk/packages/logol/tags/1.6.10-1/debian/patches/series	2014-02-08 12:25:37 UTC (rev 16013)
@@ -1,6 +0,0 @@
-fixLibPath
-fixDrmmato6.2
-setDebianDirs
-fix_doc_generation
-fix_pldoc
-remove_rubygems_usage

Copied: trunk/packages/logol/tags/1.6.10-1/debian/patches/series (from rev 16012, trunk/packages/logol/trunk/debian/patches/series)
===================================================================
--- trunk/packages/logol/tags/1.6.10-1/debian/patches/series	                        (rev 0)
+++ trunk/packages/logol/tags/1.6.10-1/debian/patches/series	2014-02-08 12:25:37 UTC (rev 16013)
@@ -0,0 +1,5 @@
+fixLibPath
+fixDrmmato6.2
+setDebianDirs
+fix_doc_generation
+remove_rubygems_usage




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