[med-svn] r16019 - in trunk/packages/R: . r-cran-segmented r-cran-segmented/trunk r-cran-segmented/trunk/debian r-cran-segmented/trunk/debian/source

Wed Feb 12 15:58:38 UTC 2014

Author: tille
Date: 2014-02-12 15:58:38 +0000 (Wed, 12 Feb 2014)
New Revision: 16019

Added:
   trunk/packages/R/r-cran-segmented/
   trunk/packages/R/r-cran-segmented/trunk/
   trunk/packages/R/r-cran-segmented/trunk/debian/
   trunk/packages/R/r-cran-segmented/trunk/debian/README.test
   trunk/packages/R/r-cran-segmented/trunk/debian/changelog
   trunk/packages/R/r-cran-segmented/trunk/debian/compat
   trunk/packages/R/r-cran-segmented/trunk/debian/control
   trunk/packages/R/r-cran-segmented/trunk/debian/copyright
   trunk/packages/R/r-cran-segmented/trunk/debian/rules
   trunk/packages/R/r-cran-segmented/trunk/debian/source/
   trunk/packages/R/r-cran-segmented/trunk/debian/source/format
   trunk/packages/R/r-cran-segmented/trunk/debian/upstream
   trunk/packages/R/r-cran-segmented/trunk/debian/watch
Log:
Inject r-cran-segmented as precondition for some other R package in DebiChem


Added: trunk/packages/R/r-cran-segmented/trunk/debian/README.test
===================================================================

--- trunk/packages/R/r-cran-segmented/trunk/debian/README.test	                        (rev 0)
+++ trunk/packages/R/r-cran-segmented/trunk/debian/README.test	2014-02-12 15:58:38 UTC (rev 16019)
@@ -0,0 +1,7 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by loading it into R with the command
+‘library(segmented)’ in order to confirm its integrity.
+
+ -- Andreas Tille <tille at debian.org>  Wed, 12 Feb 2014 16:47:31 +0100

Added: trunk/packages/R/r-cran-segmented/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-segmented/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/R/r-cran-segmented/trunk/debian/changelog	2014-02-12 15:58:38 UTC (rev 16019)
@@ -0,0 +1,5 @@
+r-cran-segmented (0.3-0.0-3) UNRELEASED; urgency=low
+
+  * Initial release (Closes: #??).
+
+ -- Andreas Tille <tille at debian.org>  Wed, 12 Feb 2014 16:47:31 +0100

Added: trunk/packages/R/r-cran-segmented/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-cran-segmented/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/R/r-cran-segmented/trunk/debian/compat	2014-02-12 15:58:38 UTC (rev 16019)
@@ -0,0 +1 @@
+9

Added: trunk/packages/R/r-cran-segmented/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-segmented/trunk/debian/control	                        (rev 0)
+++ trunk/packages/R/r-cran-segmented/trunk/debian/control	2014-02-12 15:58:38 UTC (rev 16019)
@@ -0,0 +1,24 @@
+Source: r-cran-segmented
+Section: gnu-r
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9.0),
+               cdbs,
+               r-base-dev
+Standards-Version: 3.9.5
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-segmented/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-segmented/trunk/
+Homepage: http://cran.r-project.org/web/packages/segmented/
+
+Package: r-cran-segmented
+Architecture: all
+Depends: ${misc:Depends},
+         ${R:Depends}
+Description: GNU R segmented relationships in regression models
+ This GNU R package provides segmented relationships in regression
+ models with breakpoints/changepoints estimation.
+ .
+ Given a (generalized) linear model, segmented ‘updates’ the model by
+ adding one or more segmented relationships. Several variables with
+ multiple breakpoints are allowed.

Added: trunk/packages/R/r-cran-segmented/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-segmented/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/R/r-cran-segmented/trunk/debian/copyright	2014-02-12 15:58:38 UTC (rev 16019)
@@ -0,0 +1,30 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: segmented
+Upstream-Contact: Vito M. R. Muggeo <vito.muggeo at unipa.it>
+Source: http://cran.r-project.org/web/packages/segmented/
+
+Files: *
+Copyright: 2012-2013 Vito M. R. Muggeo <vito.muggeo at unipa.it>
+License: GPLv2+
+
+Files: debian/*
+Copyright: 2014 Andreas Tille <tille at debian.org>
+License: GPLv2+
+
+License: GPLv2+
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License along
+ with this program; if not, write to the Free Software Foundation, Inc.,
+ 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+ .
+ On Debian systems, the complete text of the GNU General Public
+ License can be found in `/usr/share/common-licenses/GPL-2'.

Added: trunk/packages/R/r-cran-segmented/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-cran-segmented/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/R/r-cran-segmented/trunk/debian/rules	2014-02-12 15:58:38 UTC (rev 16019)
@@ -0,0 +1,3 @@
+#!/usr/bin/make -f
+
+include /usr/share/R/debian/r-cran.mk


Property changes on: trunk/packages/R/r-cran-segmented/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/R/r-cran-segmented/trunk/debian/source/format
===================================================================
--- trunk/packages/R/r-cran-segmented/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/R/r-cran-segmented/trunk/debian/source/format	2014-02-12 15:58:38 UTC (rev 16019)
@@ -0,0 +1 @@
+3.0 (quilt)

Added: trunk/packages/R/r-cran-segmented/trunk/debian/upstream
===================================================================
--- trunk/packages/R/r-cran-segmented/trunk/debian/upstream	                        (rev 0)
+++ trunk/packages/R/r-cran-segmented/trunk/debian/upstream	2014-02-12 15:58:38 UTC (rev 16019)
@@ -0,0 +1,12 @@
+Reference:
+  Author: Vito M.R. Muggeo
+  Title: Estimating regression models with unknown break-points
+  Journal: Statistics in Medicine
+  Year: 2003
+  Volume: 22
+  Number: 19
+  Pages: 3055--3071
+  DOI: 10.1002/sim.1545
+  PMID: 12973787
+  URL: http://onlinelibrary.wiley.com/doi/10.1002/sim.1545/abstract
+  eprint: http://onlinelibrary.wiley.com/doi/10.1002/sim.1545/pdf

Added: trunk/packages/R/r-cran-segmented/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-cran-segmented/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/R/r-cran-segmented/trunk/debian/watch	2014-02-12 15:58:38 UTC (rev 16019)
@@ -0,0 +1,2 @@
+version=3
+http://cran.r-project.org/src/contrib/segmented_([-\d.]*)\.tar\.gz


