[med-svn] r16025 - trunk/packages/zhanglab/tm-align/trunk/debian
Andreas Tille
tille at moszumanska.debian.org
Thu Feb 13 15:49:25 UTC 2014
Author: tille
Date: 2014-02-13 15:49:25 +0000 (Thu, 13 Feb 2014)
New Revision: 16025
Modified:
trunk/packages/zhanglab/tm-align/trunk/debian/TMalign.1
trunk/packages/zhanglab/tm-align/trunk/debian/changelog
trunk/packages/zhanglab/tm-align/trunk/debian/control
trunk/packages/zhanglab/tm-align/trunk/debian/get-orig-source
trunk/packages/zhanglab/tm-align/trunk/debian/rules
trunk/packages/zhanglab/tm-align/trunk/debian/watch
Log:
Commit status of latest upload
Modified: trunk/packages/zhanglab/tm-align/trunk/debian/TMalign.1
===================================================================
--- trunk/packages/zhanglab/tm-align/trunk/debian/TMalign.1 2014-02-13 15:47:08 UTC (rev 16024)
+++ trunk/packages/zhanglab/tm-align/trunk/debian/TMalign.1 2014-02-13 15:49:25 UTC (rev 16025)
@@ -56,8 +56,8 @@
The output files serve as scripts to the program
.IR rasmol.
To view the superimposed structures of the aligned regions call
- 'rasmol -script TM.sup' To view the superimposed structures of all regions
- 'rasmol -script TM.sup_all'.
+ 'rasmol \-script TM.sup' To view the superimposed structures of all regions
+ 'rasmol \-script TM.sup_all'.
.SH SEE ALSO
.BR http://zhang.bioinformatics.ku.edu/TM-align/,
Modified: trunk/packages/zhanglab/tm-align/trunk/debian/changelog
===================================================================
--- trunk/packages/zhanglab/tm-align/trunk/debian/changelog 2014-02-13 15:47:08 UTC (rev 16024)
+++ trunk/packages/zhanglab/tm-align/trunk/debian/changelog 2014-02-13 15:49:25 UTC (rev 16025)
@@ -1,19 +1,16 @@
-tm-align (20120707-1) experimental; urgency=low
+tm-align (20130511+dfsg-1) unstable; urgency=low
* New upstream version
- * Adjusted
- - path to svn (got its own zhanglab subfolder)
- - policy became 3.9.4
-
- -- Steffen Moeller <moeller at debian.org> Thu, 18 Oct 2012 17:12:22 +0200
-
-tm-align (20120507-2) UNRELEASED; urgency=low
-
* debian/copyright:
- Add Files-Excluded to document what was removed from original source
* debian/watch: enable handling of +dfsg suffix
+ * debian/get-orig-source: use new uscan of available
+ * debian/upstream: more detailed information
+ * debian/control:
+ - cme fix dpkg-control
+ - use anonscm in Vcs fields
- -- Andreas Tille <tille at debian.org> Fri, 24 Aug 2012 16:22:01 +0200
+ -- Andreas Tille <tille at debian.org> Fri, 02 Aug 2013 14:55:58 +0200
tm-align (20120507-1) unstable; urgency=low
Modified: trunk/packages/zhanglab/tm-align/trunk/debian/control
===================================================================
--- trunk/packages/zhanglab/tm-align/trunk/debian/control 2014-02-13 15:47:08 UTC (rev 16024)
+++ trunk/packages/zhanglab/tm-align/trunk/debian/control 2014-02-13 15:49:25 UTC (rev 16025)
@@ -1,21 +1,23 @@
Source: tm-align
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Steffen Moeller <moeller at debian.org>,
+ Tim Booth <tbooth at ceh.ac.uk>,
+ Andreas Tille <tille at debian.org>
Section: science
Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-DM-Upload-Allowed: yes
-Uploaders: Steffen Moeller <moeller at debian.org>,
- Tim Booth <tbooth at ceh.ac.uk>,
- Andreas Tille <tille at debian.org>
-Build-Depends: debhelper (>= 9), gfortran
+Build-Depends: debhelper (>= 9),
+ gfortran
Standards-Version: 3.9.4
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/zhanglab/tm-align/trunk/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/zhanglab/tm-align/trunk/
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/tm-align/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/tm-align/trunk/
Homepage: http://zhang.bioinformatics.ku.edu/TM-align/
Package: tm-align
Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}
-Suggests: pymol, rasmol
+Depends: ${shlibs:Depends},
+ ${misc:Depends}
+Suggests: pymol,
+ rasmol
Enhances: t-coffee
Description: structual alignment of proteins
TM-align is a computer algorithm for protein structure alignment using
@@ -23,3 +25,4 @@
matrix. This is similar to the RMSD in that unaligned portions of the
structure influence the scoring less than the more structurally conserved
regions.
+
Modified: trunk/packages/zhanglab/tm-align/trunk/debian/get-orig-source
===================================================================
--- trunk/packages/zhanglab/tm-align/trunk/debian/get-orig-source 2014-02-13 15:47:08 UTC (rev 16024)
+++ trunk/packages/zhanglab/tm-align/trunk/debian/get-orig-source 2014-02-13 15:49:25 UTC (rev 16025)
@@ -3,6 +3,16 @@
# bail out with the first problem
set -e
+# Remark: A new uscan that enables easier handling of removing files can be
+# obtained via
+# git clone git://tille@git.debian.org/git/users/tille/devscripts.git
+# and then copy scripts/uscan.pl as uscan at the beginning of your PATH
+if uscan --help | grep -q -- --repack-compression ; then
+ echo "Use new enhanced uscan"
+ uscan --verbose --force-download --repack-compression xz
+ exit
+fi
+
# script to download and repack source package of TMalign which strips the binaries from upstream tarball
PKG=`dpkg-parsechangelog | awk '/^Source/ { print $2 }'`
@@ -26,6 +36,6 @@
rm -rf TMscore TMalign
cd ..
-GZIP="--best --no-name" tar czf "$PKG"_"$VERSION".orig.tar.gz "${UPSTREAMDIR}"
+GZIP="--best --no-name" tar -czf "$PKG"_"$VERSION".orig.tar.gz "${UPSTREAMDIR}"
rm -rf "${UPSTREAMDIR}"
Modified: trunk/packages/zhanglab/tm-align/trunk/debian/rules
===================================================================
--- trunk/packages/zhanglab/tm-align/trunk/debian/rules 2014-02-13 15:47:08 UTC (rev 16024)
+++ trunk/packages/zhanglab/tm-align/trunk/debian/rules 2014-02-13 15:49:25 UTC (rev 16025)
@@ -24,5 +24,5 @@
dh_clean
get-orig-source:
- debian/get-orig-source && echo worked || echo failed
+ . debian/get-orig-source
Modified: trunk/packages/zhanglab/tm-align/trunk/debian/watch
===================================================================
--- trunk/packages/zhanglab/tm-align/trunk/debian/watch 2014-02-13 15:47:08 UTC (rev 16024)
+++ trunk/packages/zhanglab/tm-align/trunk/debian/watch 2014-02-13 15:49:25 UTC (rev 16025)
@@ -1,3 +1,3 @@
version=3
opts=dversionmangle=s/[~\+]dfsg// \
- http://zhanglab.ccmb.med.umich.edu/TM-align/TMtools([\d]*)\.tar\.gz
+http://zhanglab.ccmb.med.umich.edu/TM-align/TMtools([\d]*)\.tar\.gz
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