[med-svn] r16046 - trunk/packages/unc-fish/trunk/debian

[Andreas Tille]

Author: tille
Date: 2014-02-14 13:44:27 +0000 (Fri, 14 Feb 2014)
New Revision: 16046

Added:
   trunk/packages/unc-fish/trunk/debian/createmanpages
   trunk/packages/unc-fish/trunk/debian/manpages
   trunk/packages/unc-fish/trunk/debian/unc-fish.1
Log:
Add manpage


Added: trunk/packages/unc-fish/trunk/debian/createmanpages
===================================================================
--- trunk/packages/unc-fish/trunk/debian/createmanpages	                        (rev 0)
+++ trunk/packages/unc-fish/trunk/debian/createmanpages	2014-02-14 13:44:27 UTC (rev 16046)
@@ -0,0 +1,7 @@
+#!/bin/sh
+VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//'`
+MANDIR=debian
+mkdir -p $MANDIR
+help2man --no-info --no-discard-stderr \
+         --name='Fast Identification of Segmental Homology' \
+            --version-string="$VERSION" unc-fish > $MANDIR/unc-fish.1


Property changes on: trunk/packages/unc-fish/trunk/debian/createmanpages
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/unc-fish/trunk/debian/manpages
===================================================================
--- trunk/packages/unc-fish/trunk/debian/manpages	                        (rev 0)
+++ trunk/packages/unc-fish/trunk/debian/manpages	2014-02-14 13:44:27 UTC (rev 16046)
@@ -0,0 +1 @@
+debian/*.1

Added: trunk/packages/unc-fish/trunk/debian/unc-fish.1
===================================================================
--- trunk/packages/unc-fish/trunk/debian/unc-fish.1	                        (rev 0)
+++ trunk/packages/unc-fish/trunk/debian/unc-fish.1	2014-02-14 13:44:27 UTC (rev 16046)
@@ -0,0 +1,42 @@
+.TH UNC-FISH "1" "February 2014" "unc-fish 1.0+dfsg" "User Commands"
+.SH NAME
+unc-fish \- Fast Identification of Segmental Homology
+.SH SYNOPSIS
+.B fish
+[\-f Control_File |control.txt]
+.SH DESCRIPTION
+The program unc-fish was originalled named FISH and is a
+software for identifying regions of common ancestry between
+genome maps.  Fast identification and statistical evaluation of
+segmental homologies in comparative maps.
+.SH OPTIONS
+.TP
+\fI\-b\fR Block_File
+.TP
+\fI\-g\fR Grid_File
+.TP
+\fI\-C\fR Contig_File
+.TP
+\fI\-D\fR Max_Distance [default=10]
+.TP
+\fI\-S\fR Min_Score [default=200]
+.TP
+\fI\-T\fR Threshold [default=.05]
+.TP
+\fI\-m\fR Min_Block_Size [default=3]
+.TP
+\fI\-off\fR Turn off Detandemize
+.TP
+\fI\-h\fR help
+.TP
+\fI\-H\fR Top_Hits [default=5]
+.TP
+\fI\-A\fR Average_Score Selection [default=Max_Score]
+.TP
+\fI\-p\fR BLOCK_PROB [default=.001]
+.TP
+\fI\-B\fR Block_File_Simple
+.TP
+\fI\-q\fR QUIET_MODE
+.TP
+\fI\-t\fR Print timing