[med-svn] [python-csb] 01/01: Imported Upstream version 1.2.3+dfsg
Tomás Di Domenico
tdido-guest at moszumanska.debian.org
Mon Feb 17 12:25:44 UTC 2014
This is an automated email from the git hooks/post-receive script.
tdido-guest pushed a commit to branch upstream
in repository python-csb.
commit 0e768c3c55434f5ca2d3320669829330508f3370
Author: Tomás Di Domenico <tdido at tdido.com.ar>
Date: Mon Feb 17 11:28:17 2014 +0100
Imported Upstream version 1.2.3+dfsg
---
PKG-INFO | 2 +-
csb/__init__.py | 2 +-
csb/apps/bfit.py | 8 ++++++--
csb/apps/bfite.py | 7 +++++--
csb/apps/buildhmm.py | 8 +++++---
csb/apps/csfrag.py | 10 +++++-----
csb/apps/embd.py | 8 +++++---
csb/apps/helloworld.py | 9 ++++++---
csb/apps/hhfrag.py | 9 +++++----
csb/apps/hhsearch.py | 8 +++++---
csb/apps/precision.py | 8 +++++---
csb/apps/promix.py | 10 ++++++----
12 files changed, 55 insertions(+), 34 deletions(-)
diff --git a/PKG-INFO b/PKG-INFO
index a69d881..074a763 100644
--- a/PKG-INFO
+++ b/PKG-INFO
@@ -1,6 +1,6 @@
Metadata-Version: 1.1
Name: csb
-Version: 1.2.2
+Version: 1.2.3
Summary: Computational Structural Biology Toolbox
Home-page: http://csb.codeplex.com
Author: Michael Habeck et al.
diff --git a/csb/__init__.py b/csb/__init__.py
index ff38330..e29e1aa 100644
--- a/csb/__init__.py
+++ b/csb/__init__.py
@@ -185,7 +185,7 @@ CSB is open source and distributed under OSI-approved MIT license::
"""
-__version__ = '1.2.2.614'
+__version__ = '1.2.3.617'
class Version(object):
diff --git a/csb/apps/bfit.py b/csb/apps/bfit.py
index 2f00b85..7025e44 100644
--- a/csb/apps/bfit.py
+++ b/csb/apps/bfit.py
@@ -114,6 +114,10 @@ class BFitApp(csb.apps.Application):
m.to_pdb(self.args.outfile)
-
-if __name__ == '__main__':
+def main():
AppRunner().run()
+
+
+if __name__ == '__main__':
+ main()
+
diff --git a/csb/apps/bfite.py b/csb/apps/bfite.py
index 478ce99..e686753 100644
--- a/csb/apps/bfite.py
+++ b/csb/apps/bfite.py
@@ -109,8 +109,11 @@ class BFitApp(csb.apps.Application):
out_ensemble.models.append(model)
out_ensemble.to_pdb(self.args.outfile)
-
-if __name__ == '__main__':
+def main():
AppRunner().run()
+
+
+if __name__ == '__main__':
+ main()
\ No newline at end of file
diff --git a/csb/apps/buildhmm.py b/csb/apps/buildhmm.py
index 352c043..3eda864 100644
--- a/csb/apps/buildhmm.py
+++ b/csb/apps/buildhmm.py
@@ -297,7 +297,9 @@ class PDBProfileBuilder(ProfileBuilder):
return pdb
-
-if __name__ == '__main__':
+def main():
+ AppRunner().run()
- AppRunner().run()
+
+if __name__ == '__main__':
+ main()
\ No newline at end of file
diff --git a/csb/apps/csfrag.py b/csb/apps/csfrag.py
index fd37458..d0a6f86 100644
--- a/csb/apps/csfrag.py
+++ b/csb/apps/csfrag.py
@@ -533,9 +533,9 @@ def _task(helper, subject, qs, qe, qcs, scs):
return []
-
-
-if __name__ == '__main__':
-
+def main():
AppRunner().run()
-
\ No newline at end of file
+
+
+if __name__ == '__main__':
+ main()
\ No newline at end of file
diff --git a/csb/apps/embd.py b/csb/apps/embd.py
index b2c8da3..c70ee42 100644
--- a/csb/apps/embd.py
+++ b/csb/apps/embd.py
@@ -275,9 +275,11 @@ class Deconvolution(object):
"""
for i in range(iterations):
self.run_once()
-
-if __name__ == '__main__':
-
+def main():
AppRunner().run()
+
+
+if __name__ == '__main__':
+ main()
\ No newline at end of file
diff --git a/csb/apps/helloworld.py b/csb/apps/helloworld.py
index 06d2b96..7592500 100644
--- a/csb/apps/helloworld.py
+++ b/csb/apps/helloworld.py
@@ -48,8 +48,11 @@ class HelloWorldApp(csb.apps.Application):
self.log(text)
self.log('HW: done.')
-
-if __name__ == '__main__':
+
+def main():
+ AppRunner(sys.argv).run()
- AppRunner(sys.argv).run()
+
+if __name__ == '__main__':
+ main()
diff --git a/csb/apps/hhfrag.py b/csb/apps/hhfrag.py
index 51e0b86..804afbf 100644
--- a/csb/apps/hhfrag.py
+++ b/csb/apps/hhfrag.py
@@ -581,10 +581,11 @@ class PredictionBuilder(object):
for i in ri:
self.add(i)
-
+
+
+def main():
+ AppRunner().run()
if __name__ == '__main__':
-
- AppRunner().run()
-
\ No newline at end of file
+ main()
\ No newline at end of file
diff --git a/csb/apps/hhsearch.py b/csb/apps/hhsearch.py
index eeab329..54caaf7 100644
--- a/csb/apps/hhsearch.py
+++ b/csb/apps/hhsearch.py
@@ -271,9 +271,11 @@ class HHsearch(object):
pool.terminate()
return results
-
+
+
+def main():
+ AppRunner().run()
if __name__ == '__main__':
-
- AppRunner().run()
+ main()
\ No newline at end of file
diff --git a/csb/apps/precision.py b/csb/apps/precision.py
index cbe8632..d4e6159 100644
--- a/csb/apps/precision.py
+++ b/csb/apps/precision.py
@@ -313,9 +313,11 @@ def rmsd(target, source, fragments, pdb, save=None):
continue
return matches
-
-if __name__ == '__main__':
-
+def main():
AppRunner().run()
+
+
+if __name__ == '__main__':
+ main()
\ No newline at end of file
diff --git a/csb/apps/promix.py b/csb/apps/promix.py
index 628964e..fd149d9 100644
--- a/csb/apps/promix.py
+++ b/csb/apps/promix.py
@@ -7,7 +7,6 @@ files, each superposed on different components.
Reference: Hirsch M, Habeck M. - Bioinformatics. 2008 Oct 1;24(19):2184-92
"""
-import sys
import numpy
import csb.apps
@@ -102,7 +101,10 @@ class ProMixApp(csb.apps.Application):
ek.to_pdb(outfile)
-if __name__ == '__main__':
- AppRunner(sys.argv).run()
-# vi:expandtab:smarttab:sw=4
+def main():
+ AppRunner().run()
+
+
+if __name__ == '__main__':
+ main()
\ No newline at end of file
--
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