[med-svn] [bwa] 02/05: Merge tag 'upstream/0.7.6a'

[Andreas Tille]

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tille pushed a commit to branch master
in repository bwa.

commit f94a9ad9c28518558865f30672412996026d55c4
Merge: 6fc641d 73da463
Author: Andreas Tille <tille at debian.org>
Date:   Fri Feb 21 12:31:50 2014 +0100

    Merge tag 'upstream/0.7.6a'
    
    Upstream version 0.7.6a

 Makefile      |   2 +-
 NEWS          |  56 ++++++++++++++
 README.md     |   4 +-
 bwa.1         |  14 ++--
 bwa.c         |  34 +++++++--
 bwamem.c      | 241 +++++++++++++++++++++++++++++++++-------------------------
 bwamem.h      |   8 +-
 bwamem_pair.c |  12 ++-
 bwape.c       |   3 +-
 bwase.c       |   5 +-
 fastmap.c     |  25 ++++--
 ksw.c         |  30 +++++---
 kthread.c     |  53 +++++++++++++
 main.c        |  42 ++++------
 14 files changed, 351 insertions(+), 178 deletions(-)

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