[med-svn] [blat] 01/01: Next manpage

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository blat.

commit 9a7a1a5dc565624f0842b047f6b781b453d562d6
Author: Andreas Tille <tille at debian.org>
Date:   Mon Feb 24 21:57:19 2014 +0100

    Next manpage
---
 debian/control        |  2 +-
 debian/mans/blat.1    |  2 +-
 debian/mans/faToNib.1 | 22 ++++++++++++++++++++++
 3 files changed, 24 insertions(+), 2 deletions(-)

diff --git a/debian/control b/debian/control
index 5c4f894..192f754 100644
--- a/debian/control
+++ b/debian/control
@@ -15,7 +15,7 @@ Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
 Description: BLAST-like Alignment Tool
  Blat is an alignment tool like BLAST, but it is structured differently.
- he target database of BLAT is not a set of GenBank sequences, but
+ The target database of BLAT is not a set of GenBank sequences, but
  instead an index derived from the assembly of the entire genome.
  .
  BLAT on DNA is designed to quickly find sequences of 95% and greater
diff --git a/debian/mans/blat.1 b/debian/mans/blat.1
index 3c3550c..560e96c 100644
--- a/debian/mans/blat.1
+++ b/debian/mans/blat.1
@@ -6,7 +6,7 @@ blat \- Standalone BLAT fast sequence search command line tool
 \fBdatabase\fR \fBquery\fR [\fI\-ooc=11.ooc\fR] \fBoutput.psl\fR
 .SH DESCRIPTION
 Blat is an alignment tool like BLAST, but it is structured differently.
-he target database of BLAT is not a set of GenBank sequences, but
+The target database of BLAT is not a set of GenBank sequences, but
 instead an index derived from the assembly of the entire genome.
 .SH OPTIONS
 .PP
diff --git a/debian/mans/faToNib.1 b/debian/mans/faToNib.1
new file mode 100644
index 0000000..ea9f4c3
--- /dev/null
+++ b/debian/mans/faToNib.1
@@ -0,0 +1,22 @@
+.TH FATONIB "1" "February 2014" "faToNib 35" "User Commands"
+.SH NAME
+faToNib \- Convert from .fa to .nib format
+.SH SYNOPSIS
+.B faToNib
+[\fIoptions\fR] \fBin.fa out.nib\fR
+.SH DESCRIPTION
+.P
+Blat is an alignment tool like BLAST, but it is structured differently.
+The target database of BLAT is not  a  set  of  GenBank  sequences,  but
+instead an index derived from the assembly of the entire genome.
+.P
+The command line tool \fBfaToNib\fR convert from .fa to .nib format.
+.SH OPTIONS
+.HP
+\fB\-softMask\fR
+.IP
+create nib that soft\-masks lower case sequence
+.HP
+\fB\-hardMask\fR
+.IP
+create nib that hard\-masks lower case sequence

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/blat.git