[med-svn] [blat] 01/02: faToTwoBit.1

[Andreas Tille]

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tille pushed a commit to branch master
in repository blat.

commit ad08360e63969377d676d5247868351f807a93e6
Author: Andreas Tille <tille at debian.org>
Date:   Mon Feb 24 23:35:39 2014 +0100

    faToTwoBit.1
---
 debian/mans/faToTwoBit.1 | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

diff --git a/debian/mans/faToTwoBit.1 b/debian/mans/faToTwoBit.1
new file mode 100644
index 0000000..a6f7c28
--- /dev/null
+++ b/debian/mans/faToTwoBit.1
@@ -0,0 +1,26 @@
+.TH FATOTWOBIT "1" "February 2014" "faToTwoBit 35" "User Commands"
+.SH NAME
+faToTwoBit \- Convert DNA from fasta to 2bit format
+.SH SYNOPSIS
+.B faToTwoBit
+\fBin.fa\fR [\fIin2.fa in3.fa ...\fR] \fBout.2bit\fR
+.SH DESCRIPTION
+.P
+Blat is an alignment tool like BLAST, but it is structured differently.
+The target database of BLAT is not  a  set  of  GenBank  sequences,  but
+instead an index derived from the assembly of the entire genome.
+.P
+The command line tool \fBfaToTwoBit\fR converts DNA from fasta to 2bit format
+.SH OPTIONS
+.HP
+\fB\-noMask\fR
+.IP
+Ignore lower\-case masking in fa file.
+.HP
+\fB\-stripVersion\fR
+.IP
+Strip off version number after . for genbank accessions.
+.HP
+\fB\-ignoreDups\fR
+.IP
+only convert first sequence if there are duplicates

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