Author: tille
Date: 2014-02-25 15:04:55 +0000 (Tue, 25 Feb 2014)
New Revision: 16322
Added:
trunk/packages/python-emperor/trunk/debian/patches/
trunk/packages/python-emperor/trunk/debian/patches/fetch_examples_from_web.patch
trunk/packages/python-emperor/trunk/debian/patches/series
Modified:
trunk/packages/python-emperor/trunk/debian/control
trunk/packages/python-emperor/trunk/debian/copyright
Log:
Drop files.zip archive with potential licensing issues and a lot of byteload from the source archive and let tutorial users download it directly from the internet. Once we are removing files we can also remove a code copy of libjs-twitter-bootstrap
Modified: trunk/packages/python-emperor/trunk/debian/control
===================================================================
--- trunk/packages/python-emperor/trunk/debian/control 2014-02-25 14:48:58 UTC (rev 16321)
+++ trunk/packages/python-emperor/trunk/debian/control 2014-02-25 15:04:55 UTC (rev 16322)
@@ -15,7 +15,8 @@
Package: emperor
Architecture: all
Depends: ${misc:Depends},
- ${python:Depends}
+ ${python:Depends},
+ libjs-twitter-bootstrap
Description: tool for visualizing high-throughput microbial community data
Emperor is an interactive next generation tool for the analysis, visualization
and understanding of high throughput microbial ecology datasets.
Modified: trunk/packages/python-emperor/trunk/debian/copyright
===================================================================
--- trunk/packages/python-emperor/trunk/debian/copyright 2014-02-25 14:48:58 UTC (rev 16321)
+++ trunk/packages/python-emperor/trunk/debian/copyright 2014-02-25 15:04:55 UTC (rev 16322)
@@ -2,6 +2,9 @@
Upstream-Name: EMPeror
Upstream-Contact: Yoshiki Vázquez Baeza <yoshiki89 at gmail.com>
Source: https://pypi.python.org/pypi/emperor
+Files-Excluded:
+ doc/files
+ doc/bootstrap
Files: *
Copyright: © 2013, The Emperor Project
Added: trunk/packages/python-emperor/trunk/debian/patches/fetch_examples_from_web.patch
===================================================================
--- trunk/packages/python-emperor/trunk/debian/patches/fetch_examples_from_web.patch (rev 0)
+++ trunk/packages/python-emperor/trunk/debian/patches/fetch_examples_from_web.patch 2014-02-25 15:04:55 UTC (rev 16322)
@@ -0,0 +1,19 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Tue, 25 Feb 2014 15:17:10 +0100
+Description: The ZIP archive files/files.zip was removed from
+ the source archive since it contained some *.js files without
+ source and before we run into licensing trouble it is way more
+ simple to let people who want to test the examples from the
+ tutorial download this directly from the internet
+
+--- a/doc/tutorial_index.html
++++ b/doc/tutorial_index.html
+@@ -118,7 +118,7 @@
+ <br>
+ The dataset that we will use to exemplify Emperor’s functionality, comes from the <a href="http://www.pnas.org/content/107/14/6477.long">Fierer et. al. 2010</a> article, where three individuals and their keyboards were sampled, Figure 1.
+ <br>
+- To get started, first download and unzip these <a href="files/files.zip">files</a>, here you will find a principal coordinates file, and a mapping file. These input files are in the standard format used in <a href="http://www.qiime.org">QIIME</a>. Before continuing with the tutorial make sure you have the latest version of <a href=" https://www.google.com/intl/en/chrome/browser/">Google Chrome</a> installed in your computer. The sections described in this tutorial are:
++ To get started, first download and unzip these <a href="http://biocore.github.io/emperor/files/files.zip">files</a>, here you will find a principal coordinates file, and a mapping file. These input files are in the standard format used in <a href="http://www.qiime.org">QIIME</a>. Before continuing with the tutorial make sure you have the latest version of <a href=" https://www.google.com/intl/en/chrome/browser/">Google Chrome</a> installed in your computer. The sections described in this tutorial are:
+ <br>
+ <ul >
+ <li><a class="lead" href="#section0">Command Line Interface</a></li>
Added: trunk/packages/python-emperor/trunk/debian/patches/series
===================================================================
--- trunk/packages/python-emperor/trunk/debian/patches/series (rev 0)
+++ trunk/packages/python-emperor/trunk/debian/patches/series 2014-02-25 15:04:55 UTC (rev 16322)
@@ -0,0 +1 @@
+fetch_examples_from_web.patch