[med-svn] [bowtie2] 01/03: - d/control: bump Standards-Version Architecture: amd64 kfreebsd-amd64, starting from this version bowtie2 works on amd64 only. added python to Depends: - d/rules: remove i386 related fixes, rules for new binaries - d/bowtie2.install: added new binaries introduced by the new version - d/patches: remove fix_makefile_machine_detection.patch

[Alex Mestiashvili]

This is an automated email from the git hooks/post-receive script.

malex-guest pushed a commit to branch master
in repository bowtie2.

commit 0109e64f2f949f0b754651f31c0f9e5abd29d0da
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Mon Feb 24 14:54:46 2014 +0100

     - d/control: bump Standards-Version
       Architecture: amd64 kfreebsd-amd64, starting from this version
       bowtie2 works on amd64 only.
       added python to Depends:
     - d/rules: remove i386 related fixes,rules for new binaries
     - d/bowtie2.install: added new binaries introduced by the new version
     - d/patches: remove fix_makefile_machine_detection.patch
---
 debian/bowtie2.install | 14 +++++++++-----
 debian/control         |  6 +++---
 debian/patches/series  |  1 -
 debian/rules           | 20 +++++++-------------
 4 files changed, 19 insertions(+), 22 deletions(-)

diff --git a/debian/bowtie2.install b/debian/bowtie2.install
index dad02ea..8e332c2 100644
--- a/debian/bowtie2.install
+++ b/debian/bowtie2.install
@@ -1,5 +1,9 @@
-bowtie2		usr/bin
-bowtie2-align-l usr/bin
-bowtie2-align-s usr/bin
-bowtie2-build   usr/bin
-bowtie2-inspect usr/bin
+bowtie2			usr/bin
+bowtie2-align-l 	usr/bin
+bowtie2-align-s 	usr/bin
+bowtie2-build   	usr/bin
+bowtie2-build-l   	usr/bin
+bowtie2-build-s   	usr/bin
+bowtie2-inspect 	usr/bin
+bowtie2-inspect-l 	usr/bin
+bowtie2-inspect-s 	usr/bin
diff --git a/debian/control b/debian/control
index 08af03f..e37d527 100644
--- a/debian/control
+++ b/debian/control
@@ -6,15 +6,15 @@ Uploaders: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>,
  Andreas Tille <tille at debian.org>,
  Carlos Borroto <carlos.borroto at gmail.com>
 Build-Depends: debhelper (>= 9.0), help2man
-Standards-Version: 3.9.4
+Standards-Version: 3.9.5
 XS-Testsuite: autopkgtest
 Homepage: http://bowtie-bio.sourceforge.net/bowtie2
 Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/bowtie2.git
 Vcs-Git: git://anonscm.debian.org/debian-med/bowtie2.git
 
 Package: bowtie2
-Architecture: amd64 i386 hurd-i386 kfreebsd-amd64 kfreebsd-i386
-Depends: ${shlibs:Depends}, ${misc:Depends}
+Architecture: amd64 kfreebsd-amd64
+Depends: ${shlibs:Depends}, ${misc:Depends}, python
 Suggests: bowtie2-examples
 Description: ultrafast memory-efficient short read aligner
  is an ultrafast and memory-efficient tool for aligning sequencing reads 
diff --git a/debian/patches/series b/debian/patches/series
index 825a072..814900f 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,2 +1 @@
-fix_makefile_machine_detection.patch
 hardening.patch
diff --git a/debian/rules b/debian/rules
index f65ad42..88e27b8 100755
--- a/debian/rules
+++ b/debian/rules
@@ -1,32 +1,26 @@
 #!/usr/bin/make -f
 
 pkg := $(shell dpkg-parsechangelog | sed -n 's/^Source: //p')
-arch := $(shell dpkg-architecture -qDEB_HOST_ARCH 2>/dev/null | awk -F- '{print $$NF}')
 
 CPPFLAGS := $(shell dpkg-buildflags --get CPPFLAGS)
 LDFLAGS := $(shell dpkg-buildflags --get LDFLAGS)
 EXTRA_FLAGS := $(LDFLAGS)
 
-
-# ENABLE_SSE=0
-ifeq ($(arch),i386)
-    ENABLE_SSE=1
-endif
-ifeq ($(arch),amd64)
-    ENABLE_SSE=1
-endif
-
 %:
 	dh $@
 
 override_dh_auto_build:
-	dh_auto_build -- ENABLE_SSE=$(ENABLE_SSE) EXTRA_FLAGS=$(EXTRA_FLAGS) CPPFLAGS=$(CPPFLAGS)
+	dh_auto_build -- EXTRA_FLAGS=$(EXTRA_FLAGS) CPPFLAGS=$(CPPFLAGS)
 
 override_dh_installman:
 	mkdir -p $(CURDIR)/debian/$(pkg)/usr/share/man/man1/
 	debian/help2man-wrapper $(pkg) "wrapper for $(pkg)-align-*"
-	debian/help2man-wrapper $(pkg)-build "building a colorspace index for $(pkg)"
-	debian/help2man-wrapper $(pkg)-inspect "extracts information from a $(pkg) index"
+	debian/help2man-wrapper $(pkg)-build "wrapper for $(pkg)-build-*"
+	debian/help2man-wrapper $(pkg)-build-l "building a colorspace index for $(pkg)"
+	debian/help2man-wrapper $(pkg)-build-s "building a colorspace index for $(pkg)"
+	debian/help2man-wrapper $(pkg)-inspect "wrapper for $(pkg)-inspect-* index"
+	debian/help2man-wrapper $(pkg)-inspect-l "extracts information from a $(pkg) index"
+	debian/help2man-wrapper $(pkg)-inspect-s "extracts information from a $(pkg) index"
 	debian/help2man-wrapper $(pkg)-align-l "ultrafast and memory-efficient backend tool for aligning sequencing reads to long reference sequences"
 	debian/help2man-wrapper $(pkg)-align-s "ultrafast and memory-efficient backend tool for aligning sequencing reads to long reference sequences"
 

-- 
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