[med-svn] [blat] 01/01: Several small enhancements and polishing; main change: When using -O2 optimisation the BLAT test (cd blat/test; make) will fail - so we are using -O1 instead
Andreas Tille
tille at debian.org
Wed Feb 26 12:18:06 UTC 2014
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tille pushed a commit to branch master
in repository blat.
commit 7aa0a6367d07fd45f244d785554bd36b519c23c6
Author: Andreas Tille <tille at debian.org>
Date: Wed Feb 26 13:22:40 2014 +0100
Several small enhancements and polishing; main change: When using -O2 optimisation the BLAT test (cd blat/test; make) will fail - so we are using -O1 instead
---
debian/clean | 7 +++++++
debian/control | 2 +-
debian/rules | 12 +++---------
3 files changed, 11 insertions(+), 10 deletions(-)
diff --git a/debian/clean b/debian/clean
index ad18507..49ca4c2 100644
--- a/debian/clean
+++ b/debian/clean
@@ -1,4 +1,11 @@
+blat/test/badSplice/small2.log
+blat/test/badSplice/small2.psl
+blat/test/badSplice/smallBest2.psl
blat/test/intron50k/out/*
blat/test/throwback/test.psl
blat/test/v29skips/ex1.psl
+blat/test/v29skips/ex2.psl
+gfServer/tests/testPcr.out
+gfServer/tests/testProtNib.out
webBlat/webBlat
+blat/test/pslCheck
diff --git a/debian/control b/debian/control
index 8dbc63a..a976254 100644
--- a/debian/control
+++ b/debian/control
@@ -13,7 +13,7 @@ Homepage: http://genome.ucsc.edu/cgi-bin/hgBlat
Package: blat
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}
-Description: The BLAST-Like Alignment Tool
+Description: BLAST-Like Alignment Tool
BLAT on DNA is designed to quickly find sequences of 95% and greater
similarity of length 25 bases or more. It may miss more divergent or shorter
sequence alignments. It will find perfect sequence matches of 25 bases, and
diff --git a/debian/rules b/debian/rules
index 9a7e095..21e83f4 100755
--- a/debian/rules
+++ b/debian/rules
@@ -2,14 +2,7 @@
DH_VERBOSE := 1
-# some helpful variables - uncomment them if needed
-# shamelessly stolen from http://jmtd.net/log/awk/
-#DEBVERS := $(shell dpkg-parsechangelog | awk '/^Version:/ {print $$2}')
-#VERSION := $(shell echo '$(DEBVERS)' | sed -e 's/^[0-9]*://' -e 's/-.*//')
-#DEBFLAVOR := $(shell dpkg-parsechangelog | awk '/^Distribution:/ {print $$2}')
DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
-#DEBIAN_BRANCH := $(shell awk 'BEGIN{FS="[= ]+"} /debian-branch/ {print $$2}' debian/gbp.conf)
-#GIT_TAG := $(subst ~,_,$(VERSION))
# alternatively to manually set those variables you can
# include /usr/share/cdbs/1/rules/buildvars.mk
@@ -19,6 +12,9 @@ DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
MACHTYPE := $(shell dpkg-architecture -qDEB_HOST_GNU_CPU)
DESTDIR := $(CURDIR)/debian/$(DEBPKGNAME)/usr/
+# When using -O2 optimisation the BLAT test (cd blat/test; make) will fail
+CFLAGS:=$(shell dpkg-buildflags --get CFLAGS | sed 's/-O2/-O1/')
+
%:
dh $@
@@ -30,5 +26,3 @@ override_dh_auto_install:
dh_auto_build -- MACHTYPE="$(MACHTYPE)" DESTDIR="$(DESTDIR)" BINDIR=bin/
# cd debian/pslCheck; make MACHTYPE="$(MACHTYPE)" DESTDIR="$(DESTDIR)" BINDIR=bin/
-#get-orig-source:
-# . debian/get-orig-source
--
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