[med-svn] [blat] 01/01: Run the test suite at build time

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository blat.

commit 105bfab31ed82ec12686f71dc41dd397651ca6e9
Author: Andreas Tille <tille at debian.org>
Date:   Wed Feb 26 14:15:02 2014 +0100

    Run the test suite at build time
---
 debian/changelog                                 |  2 +-
 debian/patches/avoid_external_tool_in_test.patch | 24 ++++++++++++++++++++++++
 debian/patches/series                            |  1 +
 debian/rules                                     |  7 ++++++-
 4 files changed, 32 insertions(+), 2 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index df6fe42..273812a 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -7,4 +7,4 @@ blat (35-1) UNRELEASED; urgency=low
       - run tests
       - write autopkgtest script
 
- -- Andreas Tille <tille at debian.org>  Thu, 20 Feb 2014 11:14:17 +0100
+ -- Andreas Tille <tille at debian.org>  Wed, 26 Feb 2014 13:52:17 +0100
diff --git a/debian/patches/avoid_external_tool_in_test.patch b/debian/patches/avoid_external_tool_in_test.patch
new file mode 100644
index 0000000..0aef1ec
--- /dev/null
+++ b/debian/patches/avoid_external_tool_in_test.patch
@@ -0,0 +1,24 @@
+Author: Andreas Tille <tille at debian.org>
+Last_update: Wed, 26 Feb 2014 13:52:17 +0100
+Description: The tool pslCheck is not part of the BLAT source
+ If you really want to run this test fully you either need to obtain
+ the full jksrc source tree
+   http://hgdownload.cse.ucsc.edu/admin/jksrc.zip
+ and build pslCheck from there or you can download the binary (for instance
+ for amd64 architecture it is here:
+   http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslCheck
+ and run the test against this binary since creating it from source might
+ involve a lot of dependencies.
+
+--- a/blat/test/makefile
++++ b/blat/test/makefile
+@@ -2,7 +2,8 @@ all:  tThrowback tIntronMax
+ 
+ tThrowback:
+ 	blat -verbose=0 throwback/target1.fa throwback/query1.fa throwback/test.psl
+-	pslCheck -verbose=0 throwback/test.psl
++	# pslCheck is not part of blat source - so we can not do this test
++	# pslCheck -verbose=0 throwback/test.psl
+ 	blat -verbose=0 v29skips/ex1_database.fa v29skips/ex1_query.fa v29skips/ex1.psl
+ 	diff v29skips/ex1_reference.psl v29skips/ex1.psl
+ 	blat -verbose=0 v29skips/ex2_database.fa v29skips/ex2_query.fa v29skips/ex2.psl
diff --git a/debian/patches/series b/debian/patches/series
new file mode 100644
index 0000000..a6f10a2
--- /dev/null
+++ b/debian/patches/series
@@ -0,0 +1 @@
+avoid_external_tool_in_test.patch
diff --git a/debian/rules b/debian/rules
index 21e83f4..bf88899 100755
--- a/debian/rules
+++ b/debian/rules
@@ -24,5 +24,10 @@ override_dh_auto_build:
 
 override_dh_auto_install:
 	dh_auto_build -- MACHTYPE="$(MACHTYPE)" DESTDIR="$(DESTDIR)" BINDIR=bin/
-	# cd debian/pslCheck; make MACHTYPE="$(MACHTYPE)" DESTDIR="$(DESTDIR)" BINDIR=bin/
+	# Run the test suite after files are installed
+	cd blat/test; \
+	PATH=$(DESTDIR)/bin:$${PATH} make
 
+override_dh_auto_test:
+	echo "Test suite is running after dh_auto_install"
+	echo "Probably it would be better to create a proper install target"

-- 
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