[med-svn] r15788 - in trunk/packages/R: . r-bioc-reactome.db r-bioc-reactome.db/trunk r-bioc-reactome.db/trunk/debian r-bioc-reactome.db/trunk/debian/source
Andreas Tille
tille at moszumanska.debian.org
Thu Jan 16 14:07:38 UTC 2014
Author: tille
Date: 2014-01-16 14:07:38 +0000 (Thu, 16 Jan 2014)
New Revision: 15788
Added:
trunk/packages/R/r-bioc-reactome.db/
trunk/packages/R/r-bioc-reactome.db/trunk/
trunk/packages/R/r-bioc-reactome.db/trunk/debian/
trunk/packages/R/r-bioc-reactome.db/trunk/debian/README.test
trunk/packages/R/r-bioc-reactome.db/trunk/debian/changelog
trunk/packages/R/r-bioc-reactome.db/trunk/debian/compat
trunk/packages/R/r-bioc-reactome.db/trunk/debian/control
trunk/packages/R/r-bioc-reactome.db/trunk/debian/copyright
trunk/packages/R/r-bioc-reactome.db/trunk/debian/rules
trunk/packages/R/r-bioc-reactome.db/trunk/debian/source/
trunk/packages/R/r-bioc-reactome.db/trunk/debian/source/format
trunk/packages/R/r-bioc-reactome.db/trunk/debian/watch
Log:
Injecting r-bioc-reactome.db to address bug #735547 (not sure whether we really want such a large data package - for a first test here is the packagaging)
Added: trunk/packages/R/r-bioc-reactome.db/trunk/debian/README.test
===================================================================
--- trunk/packages/R/r-bioc-reactome.db/trunk/debian/README.test (rev 0)
+++ trunk/packages/R/r-bioc-reactome.db/trunk/debian/README.test 2014-01-16 14:07:38 UTC (rev 15788)
@@ -0,0 +1,5 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by loading it into R with the command
+‘library(reactome.db)’ in order to confirm its integrity.
Added: trunk/packages/R/r-bioc-reactome.db/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-reactome.db/trunk/debian/changelog (rev 0)
+++ trunk/packages/R/r-bioc-reactome.db/trunk/debian/changelog 2014-01-16 14:07:38 UTC (rev 15788)
@@ -0,0 +1,5 @@
+r-bioc-reactome.db (1.46.1-1) UNRELEASED; urgency=low
+
+ * Initial release (closes: #???)
+
+ -- Andreas Tille <tille at debian.org> Thu, 16 Jan 2014 14:13:14 +0100
Added: trunk/packages/R/r-bioc-reactome.db/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-bioc-reactome.db/trunk/debian/compat (rev 0)
+++ trunk/packages/R/r-bioc-reactome.db/trunk/debian/compat 2014-01-16 14:07:38 UTC (rev 15788)
@@ -0,0 +1 @@
+9
Added: trunk/packages/R/r-bioc-reactome.db/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-reactome.db/trunk/debian/control (rev 0)
+++ trunk/packages/R/r-bioc-reactome.db/trunk/debian/control 2014-01-16 14:07:38 UTC (rev 15788)
@@ -0,0 +1,27 @@
+Source: r-bioc-reactome.db
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+ cdbs,
+ r-base-dev,
+ r-bioc-annotationdbi
+Standards-Version: 3.9.5
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-reactome.db/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-reactome.db/trunk/
+Homepage: http://www.bioconductor.org/packages/release/data/annotation/html/reactome.db.html
+
+Package: r-bioc-reactome.db
+Architecture: all
+Depends: ${R:Depends},
+ ${misc:Depends},
+ AnnotationDbi
+Description: set of annotation maps for reactome
+ This package is part of BioConductor and provides a set of annotation
+ maps for reactome assembled using data from reactome.
+ .
+ Reactome is a free online database of biological pathways. There are
+ several Reactomes that concentrate on specific organisms, the largest of
+ these is focused on human biology, the following description
+ concentrates on the human Reactome.
Added: trunk/packages/R/r-bioc-reactome.db/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-bioc-reactome.db/trunk/debian/copyright (rev 0)
+++ trunk/packages/R/r-bioc-reactome.db/trunk/debian/copyright 2014-01-16 14:07:38 UTC (rev 15788)
@@ -0,0 +1,301 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: reactome.db
+Upstream-Contact: Willem Ligtenberg <willem.ligtenberg at openanalytics.eu>
+Source: http://www.bioconductor.org/packages/release/data/annotation/html/reactome.db.html
+
+Files: *
+Copyright: © 2006-2013 Willem Ligtenberg <willem.ligtenberg at openanalytics.eu>
+License: CC-BY-3.0
+
+Files: debian/*
+Copyright: 2013 Andreas Tille <tille at debian.org>
+License: CC-BY-3.0
+
+License: CC-BY-3.0
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Added: trunk/packages/R/r-bioc-reactome.db/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-bioc-reactome.db/trunk/debian/rules (rev 0)
+++ trunk/packages/R/r-bioc-reactome.db/trunk/debian/rules 2014-01-16 14:07:38 UTC (rev 15788)
@@ -0,0 +1,4 @@
+#!/usr/bin/make -f
+
+debRreposname=bioc
+include /usr/share/R/debian/r-cran.mk
Property changes on: trunk/packages/R/r-bioc-reactome.db/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/R/r-bioc-reactome.db/trunk/debian/source/format
===================================================================
--- trunk/packages/R/r-bioc-reactome.db/trunk/debian/source/format (rev 0)
+++ trunk/packages/R/r-bioc-reactome.db/trunk/debian/source/format 2014-01-16 14:07:38 UTC (rev 15788)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/R/r-bioc-reactome.db/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-bioc-reactome.db/trunk/debian/watch (rev 0)
+++ trunk/packages/R/r-bioc-reactome.db/trunk/debian/watch 2014-01-16 14:07:38 UTC (rev 15788)
@@ -0,0 +1,3 @@
+version=3
+opts=downloadurlmangle=s/\.\./packages\/release\/data\/annotation/ \
+ http://www.bioconductor.org/packages/release/data/annotation/html/reactome.db.html .*/reactome\.db_([\d\.]+)\.tar\.gz
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