[med-svn] r15804 - trunk/packages/logol/trunk/debian/patches

[olivier sallou]

Author: osallou-guest
Date: 2014-01-17 08:19:59 +0000 (Fri, 17 Jan 2014)
New Revision: 15804

Modified:
   trunk/packages/logol/trunk/debian/patches/remove_rubygems_usage
Log:
fix provided patch with line endings

Modified: trunk/packages/logol/trunk/debian/patches/remove_rubygems_usage
===================================================================
--- trunk/packages/logol/trunk/debian/patches/remove_rubygems_usage	2014-01-17 08:14:12 UTC (rev 15803)
+++ trunk/packages/logol/trunk/debian/patches/remove_rubygems_usage	2014-01-17 08:19:59 UTC (rev 15804)
@@ -15,14 +15,14 @@
 --- a/tools/logolSearch.rb
 +++ b/tools/logolSearch.rb
 @@ -22,9 +22,9 @@
- DIR=File.expand_path(File.dirname(__FILE__))
- 
- if muteOnly == 1
--  cmd = "ruby -rubygems "+DIR+"/logolIndex.rb --search "+sequence+".index --min "+minStart+" --max "+maxStart+" --pattern "+motifFileName+" --error "+nbError+" --hamming"
-+  cmd = "ruby "+DIR+"/logolIndex.rb --search "+sequence+".index --min "+minStart+" --max "+maxStart+" --pattern "+motifFileName+" --error "+nbError+" --hamming"
- else
--  cmd = "ruby -rubygems "+DIR+"/logolIndex.rb --search "+sequence+".index --min "+minStart+" --max "+maxStart+" --pattern "+motifFileName+" --error "+nbError
-+  cmd = "ruby "+DIR+"/logolIndex.rb --search "+sequence+".index --min "+minStart+" --max "+maxStart+" --pattern "+motifFileName+" --error "+nbError
- end
- 
- Open3.popen3(cmd) do |stdin,stdout,stderr, wait_thr|
+ DIR=File.expand_path(File.dirname(__FILE__))
+ 
+ if muteOnly == 1
+-  cmd = "ruby -rubygems "+DIR+"/logolIndex.rb --search "+sequence+".index --min "+minStart+" --max "+maxStart+" --pattern "+motifFileName+" --error "+nbError+" --hamming"
++  cmd = "ruby "+DIR+"/logolIndex.rb --search "+sequence+".index --min "+minStart+" --max "+maxStart+" --pattern "+motifFileName+" --error "+nbError+" --hamming"
+ else
+-  cmd = "ruby -rubygems "+DIR+"/logolIndex.rb --search "+sequence+".index --min "+minStart+" --max "+maxStart+" --pattern "+motifFileName+" --error "+nbError
++  cmd = "ruby "+DIR+"/logolIndex.rb --search "+sequence+".index --min "+minStart+" --max "+maxStart+" --pattern "+motifFileName+" --error "+nbError
+ end
+ 
+ Open3.popen3(cmd) do |stdin,stdout,stderr, wait_thr|