[med-svn] [permute] branch master updated (c332099 -> 4a896c6)
Andreas Tille
tille at debian.org
Tue Jan 21 10:10:01 UTC 2014
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository permute.
from c332099 Removed myself from Uploaders.
new bbc1a7e Imported Upstream version 0.8-0
new d6628f4 Merge tag 'upstream/0.8-0'
new cdb116b New upstream version, added myself to uploaders
new 36a3a05 debian/source/format: 3.0 (quilt)
new 8bc4f01 cme fix dpkg-control
new 4a896c6 UPload to unstable
The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
DESCRIPTION | 35 +-
MD5 | 95 +-
NAMESPACE | 202 +++-
R/Blocks.R | 13 +-
R/Plots.R | 27 +
R/Within.R | 24 +-
R/allFree.R | 17 +-
R/allPerms.R | 268 +++--
R/allStrata.R | 27 +-
R/as.matrix.permutationMatrix.R | 10 +
R/check.R | 94 ++
R/fixupCall.R | 12 +
R/getFoo-methods.R | 426 ++++++-
R/how.R | 55 +
R/numPerms.R | 239 ++--
R/permCheck.R | 62 +-
R/permControl.R | 15 -
R/permuplot.R | 6 +-
R/permute-deprecated.R | 43 +
R/permute.R | 2 +-
R/{print.permCheck.R => print.check.R} | 0
R/print.how.R | 89 ++
R/print.permControl.R | 54 -
R/print.permutationMatrix.R | 84 ++
R/print.summary.allPerms.R | 5 +-
...t.summary.permCheck.R => print.summary.check.R} | 0
R/setFoo-methods.R | 408 +++++++
R/shuffle-utils.R | 12 +
R/shuffle.R | 20 +-
R/shuffle2.R | 122 ++
R/shuffleSet.R | 2 +-
R/shuffleSet2.R | 205 ++++
R/{summary.permCheck.R => summary.check.R} | 0
R/update.Plots.R | 62 +
R/update.how.R | 73 ++
build/vignette.rds | Bin 0 -> 230 bytes
debian/changelog | 12 +-
debian/control | 6 +-
debian/source/format | 1 +
inst/COPYRIGHTS | 16 +
inst/ChangeLog | 274 ++++-
inst/NEWS.Rd | 86 ++
inst/TODO.md | 84 ++
inst/doc/permutations.R | 348 ++++++
inst/doc/permutations.Rnw | 368 +++++-
inst/doc/permutations.pdf | Bin 122867 -> 294805 bytes
inst/tests/.Rhistory | 36 -
inst/tests/test-check.R | 25 +
inst/tests/test-shuffle.R | 15 +-
inst/tests/test-shuffleSet.R | 42 +
man/allPerms.Rd | 40 +-
man/{allUtilis.Rd => allUtils.Rd} | 5 +-
man/check.Rd | 153 +++
man/get-methods.Rd | 188 +++
man/how.Rd | 130 +++
man/numPerms.Rd | 31 +-
man/permCheck-deprecated.Rd | 66 ++
man/permCheck.Rd | 280 -----
man/permControl-deprecated.Rd | 82 ++
man/permute-deprecated.Rd | 25 +
man/set-methods.Rd | 147 +++
man/shuffle-utils.Rd | 6 +-
man/shuffle.Rd | 174 +--
man/shuffleSet.Rd | 97 +-
tests/Examples/permute-Ex.Rout.save | 1219 ++++++++++++++++++++
vignettes/Z.cls | 2 +-
vignettes/permutations.Rnw | 368 +++++-
vignettes/permute.bib | 33 +
68 files changed, 6076 insertions(+), 1091 deletions(-)
create mode 100644 R/Plots.R
create mode 100644 R/as.matrix.permutationMatrix.R
create mode 100644 R/check.R
create mode 100644 R/fixupCall.R
create mode 100644 R/how.R
delete mode 100644 R/permControl.R
create mode 100644 R/permute-deprecated.R
rename R/{print.permCheck.R => print.check.R} (100%)
create mode 100644 R/print.how.R
delete mode 100644 R/print.permControl.R
create mode 100644 R/print.permutationMatrix.R
rename R/{print.summary.permCheck.R => print.summary.check.R} (100%)
create mode 100644 R/setFoo-methods.R
create mode 100644 R/shuffle2.R
create mode 100644 R/shuffleSet2.R
rename R/{summary.permCheck.R => summary.check.R} (100%)
create mode 100644 R/update.Plots.R
create mode 100644 R/update.how.R
create mode 100644 build/vignette.rds
create mode 100644 debian/source/format
create mode 100644 inst/COPYRIGHTS
create mode 100644 inst/NEWS.Rd
create mode 100644 inst/TODO.md
create mode 100644 inst/doc/permutations.R
delete mode 100644 inst/tests/.Rhistory
create mode 100644 inst/tests/test-check.R
create mode 100644 inst/tests/test-shuffleSet.R
rename man/{allUtilis.Rd => allUtils.Rd} (92%)
create mode 100644 man/check.Rd
create mode 100644 man/get-methods.Rd
create mode 100644 man/how.Rd
create mode 100644 man/permCheck-deprecated.Rd
delete mode 100644 man/permCheck.Rd
create mode 100644 man/permControl-deprecated.Rd
create mode 100644 man/permute-deprecated.Rd
create mode 100644 man/set-methods.Rd
create mode 100644 tests/Examples/permute-Ex.Rout.save
--
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