[med-svn] [permute] 02/06: Merge tag 'upstream/0.8-0'

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository permute.

commit d6628f49743969b1e8454a02f1f4a587996489a6
Merge: c332099 bbc1a7e
Author: Andreas Tille <tille at debian.org>
Date:   Tue Jan 21 11:06:14 2014 +0100

    Merge tag 'upstream/0.8-0'
    
    Upstream version 0.8-0

 DESCRIPTION                                        |   35 +-
 MD5                                                |   95 +-
 NAMESPACE                                          |  202 +++-
 R/Blocks.R                                         |   13 +-
 R/Plots.R                                          |   27 +
 R/Within.R                                         |   24 +-
 R/allFree.R                                        |   17 +-
 R/allPerms.R                                       |  268 +++--
 R/allStrata.R                                      |   27 +-
 R/as.matrix.permutationMatrix.R                    |   10 +
 R/check.R                                          |   94 ++
 R/fixupCall.R                                      |   12 +
 R/getFoo-methods.R                                 |  426 ++++++-
 R/how.R                                            |   55 +
 R/numPerms.R                                       |  239 ++--
 R/permCheck.R                                      |   62 +-
 R/permControl.R                                    |   15 -
 R/permuplot.R                                      |    6 +-
 R/permute-deprecated.R                             |   43 +
 R/permute.R                                        |    2 +-
 R/{print.permCheck.R => print.check.R}             |    0
 R/print.how.R                                      |   89 ++
 R/print.permControl.R                              |   54 -
 R/print.permutationMatrix.R                        |   84 ++
 R/print.summary.allPerms.R                         |    5 +-
 ...t.summary.permCheck.R => print.summary.check.R} |    0
 R/setFoo-methods.R                                 |  408 +++++++
 R/shuffle-utils.R                                  |   12 +
 R/shuffle.R                                        |   20 +-
 R/shuffle2.R                                       |  122 ++
 R/shuffleSet.R                                     |    2 +-
 R/shuffleSet2.R                                    |  205 ++++
 R/{summary.permCheck.R => summary.check.R}         |    0
 R/update.Plots.R                                   |   62 +
 R/update.how.R                                     |   73 ++
 build/vignette.rds                                 |  Bin 0 -> 230 bytes
 inst/COPYRIGHTS                                    |   16 +
 inst/ChangeLog                                     |  274 ++++-
 inst/NEWS.Rd                                       |   86 ++
 inst/TODO.md                                       |   84 ++
 inst/doc/permutations.R                            |  348 ++++++
 inst/doc/permutations.Rnw                          |  368 +++++-
 inst/doc/permutations.pdf                          |  Bin 122867 -> 294805 bytes
 inst/tests/.Rhistory                               |   36 -
 inst/tests/test-check.R                            |   25 +
 inst/tests/test-shuffle.R                          |   15 +-
 inst/tests/test-shuffleSet.R                       |   42 +
 man/allPerms.Rd                                    |   40 +-
 man/{allUtilis.Rd => allUtils.Rd}                  |    5 +-
 man/check.Rd                                       |  153 +++
 man/get-methods.Rd                                 |  188 +++
 man/how.Rd                                         |  130 +++
 man/numPerms.Rd                                    |   31 +-
 man/permCheck-deprecated.Rd                        |   66 ++
 man/permCheck.Rd                                   |  280 -----
 man/permControl-deprecated.Rd                      |   82 ++
 man/permute-deprecated.Rd                          |   25 +
 man/set-methods.Rd                                 |  147 +++
 man/shuffle-utils.Rd                               |    6 +-
 man/shuffle.Rd                                     |  174 +--
 man/shuffleSet.Rd                                  |   97 +-
 tests/Examples/permute-Ex.Rout.save                | 1219 ++++++++++++++++++++
 vignettes/Z.cls                                    |    2 +-
 vignettes/permutations.Rnw                         |  368 +++++-
 vignettes/permute.bib                              |   33 +
 65 files changed, 6062 insertions(+), 1086 deletions(-)

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