[med-svn] [permute] branch upstream updated (069836c -> bbc1a7e)
Andreas Tille
tille at debian.org
Tue Jan 21 10:10:02 UTC 2014
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch upstream
in repository permute.
from 069836c Imported Upstream version 0.7-0
new bbc1a7e Imported Upstream version 0.8-0
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
DESCRIPTION | 35 +-
MD5 | 95 +-
NAMESPACE | 202 +++-
R/Blocks.R | 13 +-
R/Plots.R | 27 +
R/Within.R | 24 +-
R/allFree.R | 17 +-
R/allPerms.R | 268 +++--
R/allStrata.R | 27 +-
R/as.matrix.permutationMatrix.R | 10 +
R/check.R | 94 ++
R/fixupCall.R | 12 +
R/getFoo-methods.R | 426 ++++++-
R/how.R | 55 +
R/numPerms.R | 239 ++--
R/permCheck.R | 62 +-
R/permControl.R | 15 -
R/permuplot.R | 6 +-
R/permute-deprecated.R | 43 +
R/permute.R | 2 +-
R/{print.permCheck.R => print.check.R} | 0
R/print.how.R | 89 ++
R/print.permControl.R | 54 -
R/print.permutationMatrix.R | 84 ++
R/print.summary.allPerms.R | 5 +-
...t.summary.permCheck.R => print.summary.check.R} | 0
R/setFoo-methods.R | 408 +++++++
R/shuffle-utils.R | 12 +
R/shuffle.R | 20 +-
R/shuffle2.R | 122 ++
R/shuffleSet.R | 2 +-
R/shuffleSet2.R | 205 ++++
R/{summary.permCheck.R => summary.check.R} | 0
R/update.Plots.R | 62 +
R/update.how.R | 73 ++
build/vignette.rds | Bin 0 -> 230 bytes
inst/COPYRIGHTS | 16 +
inst/ChangeLog | 274 ++++-
inst/NEWS.Rd | 86 ++
inst/TODO.md | 84 ++
inst/doc/permutations.R | 348 ++++++
inst/doc/permutations.Rnw | 368 +++++-
inst/doc/permutations.pdf | Bin 122867 -> 294805 bytes
inst/tests/.Rhistory | 36 -
inst/tests/test-check.R | 25 +
inst/tests/test-shuffle.R | 15 +-
inst/tests/test-shuffleSet.R | 42 +
man/allPerms.Rd | 40 +-
man/{allUtilis.Rd => allUtils.Rd} | 5 +-
man/check.Rd | 153 +++
man/get-methods.Rd | 188 +++
man/how.Rd | 130 +++
man/numPerms.Rd | 31 +-
man/permCheck-deprecated.Rd | 66 ++
man/permCheck.Rd | 280 -----
man/permControl-deprecated.Rd | 82 ++
man/permute-deprecated.Rd | 25 +
man/set-methods.Rd | 147 +++
man/shuffle-utils.Rd | 6 +-
man/shuffle.Rd | 174 +--
man/shuffleSet.Rd | 97 +-
tests/Examples/permute-Ex.Rout.save | 1219 ++++++++++++++++++++
vignettes/Z.cls | 2 +-
vignettes/permutations.Rnw | 368 +++++-
vignettes/permute.bib | 33 +
65 files changed, 6062 insertions(+), 1086 deletions(-)
create mode 100644 R/Plots.R
create mode 100644 R/as.matrix.permutationMatrix.R
create mode 100644 R/check.R
create mode 100644 R/fixupCall.R
create mode 100644 R/how.R
delete mode 100644 R/permControl.R
create mode 100644 R/permute-deprecated.R
rename R/{print.permCheck.R => print.check.R} (100%)
create mode 100644 R/print.how.R
delete mode 100644 R/print.permControl.R
create mode 100644 R/print.permutationMatrix.R
rename R/{print.summary.permCheck.R => print.summary.check.R} (100%)
create mode 100644 R/setFoo-methods.R
create mode 100644 R/shuffle2.R
create mode 100644 R/shuffleSet2.R
rename R/{summary.permCheck.R => summary.check.R} (100%)
create mode 100644 R/update.Plots.R
create mode 100644 R/update.how.R
create mode 100644 build/vignette.rds
create mode 100644 inst/COPYRIGHTS
create mode 100644 inst/NEWS.Rd
create mode 100644 inst/TODO.md
create mode 100644 inst/doc/permutations.R
delete mode 100644 inst/tests/.Rhistory
create mode 100644 inst/tests/test-check.R
create mode 100644 inst/tests/test-shuffleSet.R
rename man/{allUtilis.Rd => allUtils.Rd} (92%)
create mode 100644 man/check.Rd
create mode 100644 man/get-methods.Rd
create mode 100644 man/how.Rd
create mode 100644 man/permCheck-deprecated.Rd
delete mode 100644 man/permCheck.Rd
create mode 100644 man/permControl-deprecated.Rd
create mode 100644 man/permute-deprecated.Rd
create mode 100644 man/set-methods.Rd
create mode 100644 tests/Examples/permute-Ex.Rout.save
--
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