[med-svn] r15903 - in trunk/packages/probalign: tags/1.4-3/patches trunk/debian/patches

[Andreas Tille]

Author: tille
Date: 2014-01-30 19:20:46 +0000 (Thu, 30 Jan 2014)
New Revision: 15903

Added:
   trunk/packages/probalign/tags/1.4-3/patches/hardening.patch
   trunk/packages/probalign/trunk/debian/patches/hardening.patch
Log:
Add missing patch in svn


Added: trunk/packages/probalign/tags/1.4-3/patches/hardening.patch
===================================================================
--- trunk/packages/probalign/tags/1.4-3/patches/hardening.patch	                        (rev 0)
+++ trunk/packages/probalign/tags/1.4-3/patches/hardening.patch	2014-01-30 19:20:46 UTC (rev 15903)
@@ -0,0 +1,20 @@
+Author: Andreas Tille <tille at debian.org>
+LastChanged: Thu, 14 Nov 2013 16:41:20 +0100
+Description: Propagate hardening options
+
+--- a/Makefile
++++ b/Makefile
+@@ -1,11 +1,11 @@
+ CXX = g++
+-CXXFLAGS = -O3 -W -Wall -funroll-loops
++CXXFLAGS += -O3 -W -Wall -funroll-loops
+ TARGET = probalign
+ 
+ all : $(TARGET)
+ 
+ probalign : MultiSequence.h Sequence.h FileBuffer.h SparseMatrix.h EvolutionaryTree.h SafeVector.h Main.cc Sequence.h PostProbs.cc ComputeAlignment.cc ReadMatrix.cc Matrix.h
+-	$(CXX) $(CXXFLAGS) -lm -o $(TARGET) Main.cc PostProbs.cc ComputeAlignment.cc ReadMatrix.cc
++	$(CXX) $(CXXFLAGS) -lm -o $(TARGET) Main.cc PostProbs.cc ComputeAlignment.cc ReadMatrix.cc $(LDFLAGS)
+ 
+ clean: 
+ 	rm -f $(TARGET)

Added: trunk/packages/probalign/trunk/debian/patches/hardening.patch
===================================================================
--- trunk/packages/probalign/trunk/debian/patches/hardening.patch	                        (rev 0)
+++ trunk/packages/probalign/trunk/debian/patches/hardening.patch	2014-01-30 19:20:46 UTC (rev 15903)
@@ -0,0 +1,20 @@
+Author: Andreas Tille <tille at debian.org>
+LastChanged: Thu, 14 Nov 2013 16:41:20 +0100
+Description: Propagate hardening options
+
+--- a/Makefile
++++ b/Makefile
+@@ -1,11 +1,11 @@
+ CXX = g++
+-CXXFLAGS = -O3 -W -Wall -funroll-loops
++CXXFLAGS += -O3 -W -Wall -funroll-loops
+ TARGET = probalign
+ 
+ all : $(TARGET)
+ 
+ probalign : MultiSequence.h Sequence.h FileBuffer.h SparseMatrix.h EvolutionaryTree.h SafeVector.h Main.cc Sequence.h PostProbs.cc ComputeAlignment.cc ReadMatrix.cc Matrix.h
+-	$(CXX) $(CXXFLAGS) -lm -o $(TARGET) Main.cc PostProbs.cc ComputeAlignment.cc ReadMatrix.cc
++	$(CXX) $(CXXFLAGS) -lm -o $(TARGET) Main.cc PostProbs.cc ComputeAlignment.cc ReadMatrix.cc $(LDFLAGS)
+ 
+ clean: 
+ 	rm -f $(TARGET)