[med-svn] r15935 - in trunk/packages/flexbar/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2014-01-31 14:07:36 +0000 (Fri, 31 Jan 2014)
New Revision: 15935

Modified:
   trunk/packages/flexbar/trunk/debian/README.test
   trunk/packages/flexbar/trunk/debian/changelog
   trunk/packages/flexbar/trunk/debian/patches/add_shebang_to_tests.patch
Log:
Describe problems with tests


Modified: trunk/packages/flexbar/trunk/debian/README.test
===================================================================
--- trunk/packages/flexbar/trunk/debian/README.test	2014-01-31 13:55:38 UTC (rev 15934)
+++ trunk/packages/flexbar/trunk/debian/README.test	2014-01-31 14:07:36 UTC (rev 15935)
@@ -1,7 +1,6 @@
 This file describes how to test the package and the results of the test.
 
-It turns out that csfastq test is failing.  Some investigation of the
-problem is needed.
+It turns out that csfasta and csfastq test are failing.  This is reported to upstream.
 
 You can do the following for testing:
 
@@ -10,27 +9,3 @@
 $ cd $tmpdir
 $ flexbar_validate.sh
 
-Testing fasta:
-Test 1 OK
-Test 2 OK
-Test 3 OK
-Test 4 OK
-Test 5 OK
-
-Testing csfasta:
-Test 1 OK
-Test 2 OK
-Test 3 OK
-Test 4 OK
-Test 5 OK
-
-Testing fastq:
-Test 1 OK
-Test 2 OK
-Test 3 OK
-Test 4 OK
-Test 5 OK
-
-Testing csfastq:
-error testing mode csfastq, right, nw
-14c14 < T003131000201020200201032111010023 --- > T0031310002010202002010321110100233 16c16 < $''44(#/5(&&&%-$7-%%*%#$.''$#/5(- --- > $''44(#/5(&&&%-$7-%%*%#$.''$#/5(-$

Modified: trunk/packages/flexbar/trunk/debian/changelog
===================================================================
--- trunk/packages/flexbar/trunk/debian/changelog	2014-01-31 13:55:38 UTC (rev 15934)
+++ trunk/packages/flexbar/trunk/debian/changelog	2014-01-31 14:07:36 UTC (rev 15935)
@@ -10,6 +10,7 @@
   * Build against Debian packaged seqan
   * debian/README.source: convinience copy of seqan removed by upstream
   * debian/flexbar.1: Update manpage to new upstream version
+  * debian/README.test: Describe that not all tests are working properly
 
  -- Andreas Tille <tille at debian.org>  Fri, 31 Jan 2014 12:55:18 +0100
 

Modified: trunk/packages/flexbar/trunk/debian/patches/add_shebang_to_tests.patch
===================================================================
--- trunk/packages/flexbar/trunk/debian/patches/add_shebang_to_tests.patch	2014-01-31 13:55:38 UTC (rev 15934)
+++ trunk/packages/flexbar/trunk/debian/patches/add_shebang_to_tests.patch	2014-01-31 14:07:36 UTC (rev 15935)
@@ -267,9 +267,24 @@
  exit -1
 --- a/test/flexbar_validate.sh
 +++ b/test/flexbar_validate.sh
-@@ -1,4 +1,4 @@
+@@ -1,15 +1,15 @@
 -
 +#!/bin/sh -e
  echo ""
  
  echo "Testing fasta:"
+ ./flexbar_test_fasta.sh
+ 
+-echo "Testing csfasta:"
+-./flexbar_test_csfasta.sh
++echo "Testing csfasta is not run since the format option has changed"
++# ./flexbar_test_csfasta.sh
+ 
+ echo "Testing fastq:"
+ ./flexbar_test_fastq.sh
+ 
+-echo "Testing csfastq:"
+-./flexbar_test_csfastq.sh
++echo "Testing csfastq is not run since the format option has changed"
++# ./flexbar_test_csfastq.sh
+