[med-svn] r17399 - in trunk/packages/ncbi-blast+/tags: . 2.2.29-3/debian

Aaron M. Ucko ucko at moszumanska.debian.org
Tue Jul 1 22:35:20 UTC 2014


Author: ucko
Date: 2014-07-01 22:35:20 +0000 (Tue, 01 Jul 2014)
New Revision: 17399

Added:
   trunk/packages/ncbi-blast+/tags/2.2.29-3/
   trunk/packages/ncbi-blast+/tags/2.2.29-3/debian/changelog
   trunk/packages/ncbi-blast+/tags/2.2.29-3/debian/control
Removed:
   trunk/packages/ncbi-blast+/tags/2.2.29-3/debian/changelog
   trunk/packages/ncbi-blast+/tags/2.2.29-3/debian/control
Log:
[svn-buildpackage] Tagging ncbi-blast+ 2.2.29-3

Deleted: trunk/packages/ncbi-blast+/tags/2.2.29-3/debian/changelog
===================================================================
--- trunk/packages/ncbi-blast+/trunk/debian/changelog	2014-06-30 15:02:48 UTC (rev 17377)
+++ trunk/packages/ncbi-blast+/tags/2.2.29-3/debian/changelog	2014-07-01 22:35:20 UTC (rev 17399)
@@ -1,191 +0,0 @@
-ncbi-blast+ (2.2.29-3) UNRELEASED; urgency=medium
-
-  * NOT YET RELEASED.
-  * debian/patches/include_typeinfo: Patch include/corelib/ncbistl.hpp to
-    ensure sufficient coverage; fix typos in patch headers.  (Closes: #753190.)
-
- -- Aaron M. Ucko <ucko at debian.org>  Mon, 30 Jun 2014 11:02:45 -0400
-
-ncbi-blast+ (2.2.29-2) unstable; urgency=medium
-
-  * d/patches/include_typeinfo (Closes: #753190).
-
- -- Olivier Sallou <osallou at debian.org>  Sat, 07 Jun 2014 11:28:22 +0200
-
-ncbi-blast+ (2.2.29-1) unstable; urgency=medium
-
-  * New upstream release 
-
- -- Olivier Sallou <osallou at debian.org>  Fri, 06 Jun 2014 22:38:40 +0200
-
-ncbi-blast+ (2.2.28-2) unstable; urgency=low
-
-  * debian/patches/use_pie_for_apps: Explicitly build all executables with
-    -fPIE -pie, to avoid giving project_tree_builder a partial PIE
-    treatment that now fails on mips and mipsel.  (Closes: #710807.)
-  * debian/rules: Retire redundant APP_LDFLAGS override.
-  * Standards-Version: 3.9.4.  (Already compliant.)
-  
- -- Aaron M. Ucko <ucko at debian.org>  Sun, 02 Jun 2013 23:00:44 -0400
-
-ncbi-blast+ (2.2.28-1) unstable; urgency=low
-
-  * New upstream release
-    - Thanks to Tim Booth for package update help.
-
- -- Olivier Sallou <osallou at debian.org>  Sat, 01 Jun 2013 08:40:51 +0200
-
-ncbi-blast+ (2.2.27-3) unstable; urgency=low
-
-  * debian/series: active patch fix_arm_mips_build (Closes: #688661).
-
- -- Olivier Sallou <osallou at debian.org>  Fri, 05 Oct 2012 11:03:03 +0200
-
-ncbi-blast+ (2.2.27-2) unstable; urgency=low
-
-  * debian/patches/fix_arm_mips_build: Fix FTBS on ARM and MIPS
-    (Closes: #688661).
-  * debian/rules: rename seedtop to seedtop+ to avoid blast2 conflict
-    (Closes: #688684).
-
- -- Olivier Sallou <osallou at debian.org>  Mon, 24 Sep 2012 09:28:29 +0200
-
-ncbi-blast+ (2.2.27-1) unstable; urgency=low
-
-  * New upstream release 
-
- -- Olivier Sallou <osallou at debian.org>  Fri, 21 Sep 2012 17:25:41 +0200
-
-ncbi-blast+ (2.2.26-3) unstable; urgency=low
-
-  [ Aaron M. Ucko ]
-  * debian/patches/fix_gcc47_errors: fix various GCC 4.7 compilation
-    errors and warnings.  (Closes: #669679.)
-    - Explicitly qualify more dependent names originating in base templates.
-    - Directly #include headers as needed.
-    - Use modern syntax for making protected base members public.
-    - Add forward declarations as needed.
-  * Wrap and sort build dependencies to ease maintenance thereof.
-  * Enable full hardening flags, introducing a small patch
-    (use_pie_for_apps) to reflect the need to build executables and
-    libraries differently.
-  * Use upstream's new --with-symbols flag in nostrip builds.
-
-  [ Andreas Tille ]
-  * debian/control: Modernize Vcs-* fields.
-
- -- Aaron M. Ucko <ucko at debian.org>  Thu, 10 May 2012 23:42:49 -0400
-
-ncbi-blast+ (2.2.26-2) unstable; urgency=low
-
-  * debian/patches/wrong_path_to_touch.patch :Fix upstream FTBFS on the Hurd
-    hardcodes wrong path to touch (Closes: #663244)
-
- -- Olivier Sallou <osallou at debian.org>  Wed, 07 Mar 2012 17:29:23 +0100
-
-ncbi-blast+ (2.2.26-1) unstable; urgency=low
-
-  [ Olivier Sallou ]
-  * New upstream release 
-  * Remove some patches, applied upstream
-
-  [ Andreas Tille]
-  * debian/copyright: Added Upstream-Contact
-
- -- Olivier Sallou <osallou at debian.org>  Wed, 07 Mar 2012 09:37:10 +0100
-
-ncbi-blast+ (2.2.25-7) unstable; urgency=low
-
-  * Do not output everything to STDERR in
-    c++/src/app/blast/update_blastdb.pl
-    Closes: #644237
-  * debian/control: Depends s/${python:Depends}/python/ because
-    the python dependency of /usr/bin/windowmasker_2.2.22_adapter
-    is not detected obviosely
-  * debian/copyright: Indentation fixes to get DEP5 compatibility
-
- -- Andreas Tille <tille at debian.org>  Wed, 21 Dec 2011 15:47:04 +0100
-
-ncbi-blast+ (2.2.25-6) unstable; urgency=low
-
-   * debian/control:
-     Luca Capello <luca at pca.it>, fix reference for legacy_blast (Closes: #642986).
-     + add a new line to separate the actual description from usage
-      instruction in the long Description:.
-   * debian/rules: add gene_info_reader binary in package
-
- -- Olivier Sallou <olivier.sallou at irisa.fr>  Fri, 30 Sep 2011 12:31:05 -0400
-
-ncbi-blast+ (2.2.25-5) unstable; urgency=low
-
-  * Team upload.
-  * debian/patches/hurd_fixes: further patch configure(.ac) to reflect
-    -Wl,rpath,... support.  (Closes: #629656.)
-  * debian/patches/fix_lib_deps: link makembindex and srsearch against
-    libxconnect rather than libconnect for consistency with libblast,
-    which uses the former for consistency with other projects.
-
- -- Aaron M. Ucko <ucko at debian.org>  Mon, 29 Aug 2011 12:31:05 -0400
-
-ncbi-blast+ (2.2.25-4) unstable; urgency=low
-
-  [ Aaron M. Ucko ]
-  * Team upload.
-  * debian/patches/support_other_cpus: belatedly add a descriptive header.
-  * debian/patches/hurd_fixes: new; fix hurd-specific issues.
-    (In conjunction with the following change, finally closes: #629656.)
-  * debian/control:
-    - Build-Depends += libc0.3-dev (>= 2.13-9~) [hurd-i386] to avoid #630180.
-    - Declare both binary packages as Multi-Arch: foreign.
-  * debian/patches/fix_lib_deps: new; ensure that all libraries link against
-    all direct dependencies.  (Break the dependency loop between libxblast
-    and libxalgoblastdbindex by having the former provide only the C++ BLAST
-    API, leaving the C core only in libblast.)  (Closes: #633567.)
-  * debian/rules: tweak LDFLAGS, supplying -Wl,--as-needed across the
-    board (as it is now safe to do so) and adding -Wl,--enable-new-dtags
-    to allow LD_LIBRARY_PATH to override the private rpath.
-  * debian/patches/no_multiarch_rpath: new; avoid redundant rpath entries
-    on multiarch systems (courtesy of overzealous logic to ensure
-    executables will be able to find libstdc++.)
-
-  [ Andreas Tille ]
-  * Enhances: t-coffee (as stated in tasks file)
-
- -- Aaron M. Ucko <ucko at debian.org>  Sun, 28 Aug 2011 18:45:19 -0400
-
-ncbi-blast+ (2.2.25-3) unstable; urgency=low
-
-  * Team upload.
-  * debian/rules:
-    - Export MAKE to override an internal upstream build script that
-      otherwise incorrectly defaults to gmake on non-Linux
-      architectures. (Really closes: #629656, with any luck.)
-    - Force CONFIG_SHELL=/bin/bash to avoid lossage that can occur with zsh4
-      masquerading as ksh, which configure otherwise favors (due to complaints
-      from users with broken BASH_ENV scripts that change directories).
-
- -- Aaron M. Ucko <ucko at debian.org>  Thu, 09 Jun 2011 19:25:45 -0400
-
-ncbi-blast+ (2.2.25-2) unstable; urgency=low
-
-  * Team upload.
-  * Fix several sources of build failures (closes: #629656):
-    - debian/rules (override_dh_install): Correctly support building only
-      architecture-dependent packages.
-      (DEB_CONFIGURE_EXTRA_FLAGS): Add --without-caution to override the
-      upstream build system's reluctance to build shared libraries on the
-      Hurd or kFreeBSD, which it doesn't specifically recognize.  Limit C++
-      optimization level to -O (rather than the default -O2) on mips(el),
-      on which g++ otherwise crashes. :-/
-    - debian/patches/support_other_cpus (new; committed upstream too):
-      build correctly on architectures that wound up defining
-      NCBI_SLOW_ATOMIC_SWAP (spuriously in the case of powerpc,
-      whose detection the patch fixes as well).
-
- -- Aaron M. Ucko <ucko at debian.org>  Wed, 08 Jun 2011 21:42:52 -0400
-
-ncbi-blast+ (2.2.25-1) unstable; urgency=low
-
-  * Initial release (Closes: #624394) 
-
- -- Olivier Sallou <olivier.sallou at irisa.fr>  Wed, 08 Jun 2011 00:15:15 +0200

Copied: trunk/packages/ncbi-blast+/tags/2.2.29-3/debian/changelog (from rev 17398, trunk/packages/ncbi-blast+/trunk/debian/changelog)
===================================================================
--- trunk/packages/ncbi-blast+/tags/2.2.29-3/debian/changelog	                        (rev 0)
+++ trunk/packages/ncbi-blast+/tags/2.2.29-3/debian/changelog	2014-07-01 22:35:20 UTC (rev 17399)
@@ -0,0 +1,191 @@
+ncbi-blast+ (2.2.29-3) unstable; urgency=medium
+
+  * debian/patches/include_typeinfo: Patch include/corelib/ncbistl.hpp to
+    ensure sufficient coverage; fix typos in patch headers.  (Closes: #753190.)
+  * Standards-Version: 3.9.4.  (Already compliant.)
+
+ -- Aaron M. Ucko <ucko at debian.org>  Tue, 01 Jul 2014 18:27:46 -0400
+
+ncbi-blast+ (2.2.29-2) unstable; urgency=medium
+
+  * d/patches/include_typeinfo (Closes: #753190).
+
+ -- Olivier Sallou <osallou at debian.org>  Sat, 07 Jun 2014 11:28:22 +0200
+
+ncbi-blast+ (2.2.29-1) unstable; urgency=medium
+
+  * New upstream release 
+
+ -- Olivier Sallou <osallou at debian.org>  Fri, 06 Jun 2014 22:38:40 +0200
+
+ncbi-blast+ (2.2.28-2) unstable; urgency=low
+
+  * debian/patches/use_pie_for_apps: Explicitly build all executables with
+    -fPIE -pie, to avoid giving project_tree_builder a partial PIE
+    treatment that now fails on mips and mipsel.  (Closes: #710807.)
+  * debian/rules: Retire redundant APP_LDFLAGS override.
+  * Standards-Version: 3.9.4.  (Already compliant.)
+  
+ -- Aaron M. Ucko <ucko at debian.org>  Sun, 02 Jun 2013 23:00:44 -0400
+
+ncbi-blast+ (2.2.28-1) unstable; urgency=low
+
+  * New upstream release
+    - Thanks to Tim Booth for package update help.
+
+ -- Olivier Sallou <osallou at debian.org>  Sat, 01 Jun 2013 08:40:51 +0200
+
+ncbi-blast+ (2.2.27-3) unstable; urgency=low
+
+  * debian/series: active patch fix_arm_mips_build (Closes: #688661).
+
+ -- Olivier Sallou <osallou at debian.org>  Fri, 05 Oct 2012 11:03:03 +0200
+
+ncbi-blast+ (2.2.27-2) unstable; urgency=low
+
+  * debian/patches/fix_arm_mips_build: Fix FTBS on ARM and MIPS
+    (Closes: #688661).
+  * debian/rules: rename seedtop to seedtop+ to avoid blast2 conflict
+    (Closes: #688684).
+
+ -- Olivier Sallou <osallou at debian.org>  Mon, 24 Sep 2012 09:28:29 +0200
+
+ncbi-blast+ (2.2.27-1) unstable; urgency=low
+
+  * New upstream release 
+
+ -- Olivier Sallou <osallou at debian.org>  Fri, 21 Sep 2012 17:25:41 +0200
+
+ncbi-blast+ (2.2.26-3) unstable; urgency=low
+
+  [ Aaron M. Ucko ]
+  * debian/patches/fix_gcc47_errors: fix various GCC 4.7 compilation
+    errors and warnings.  (Closes: #669679.)
+    - Explicitly qualify more dependent names originating in base templates.
+    - Directly #include headers as needed.
+    - Use modern syntax for making protected base members public.
+    - Add forward declarations as needed.
+  * Wrap and sort build dependencies to ease maintenance thereof.
+  * Enable full hardening flags, introducing a small patch
+    (use_pie_for_apps) to reflect the need to build executables and
+    libraries differently.
+  * Use upstream's new --with-symbols flag in nostrip builds.
+
+  [ Andreas Tille ]
+  * debian/control: Modernize Vcs-* fields.
+
+ -- Aaron M. Ucko <ucko at debian.org>  Thu, 10 May 2012 23:42:49 -0400
+
+ncbi-blast+ (2.2.26-2) unstable; urgency=low
+
+  * debian/patches/wrong_path_to_touch.patch :Fix upstream FTBFS on the Hurd
+    hardcodes wrong path to touch (Closes: #663244)
+
+ -- Olivier Sallou <osallou at debian.org>  Wed, 07 Mar 2012 17:29:23 +0100
+
+ncbi-blast+ (2.2.26-1) unstable; urgency=low
+
+  [ Olivier Sallou ]
+  * New upstream release 
+  * Remove some patches, applied upstream
+
+  [ Andreas Tille]
+  * debian/copyright: Added Upstream-Contact
+
+ -- Olivier Sallou <osallou at debian.org>  Wed, 07 Mar 2012 09:37:10 +0100
+
+ncbi-blast+ (2.2.25-7) unstable; urgency=low
+
+  * Do not output everything to STDERR in
+    c++/src/app/blast/update_blastdb.pl
+    Closes: #644237
+  * debian/control: Depends s/${python:Depends}/python/ because
+    the python dependency of /usr/bin/windowmasker_2.2.22_adapter
+    is not detected obviosely
+  * debian/copyright: Indentation fixes to get DEP5 compatibility
+
+ -- Andreas Tille <tille at debian.org>  Wed, 21 Dec 2011 15:47:04 +0100
+
+ncbi-blast+ (2.2.25-6) unstable; urgency=low
+
+   * debian/control:
+     Luca Capello <luca at pca.it>, fix reference for legacy_blast (Closes: #642986).
+     + add a new line to separate the actual description from usage
+      instruction in the long Description:.
+   * debian/rules: add gene_info_reader binary in package
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr>  Fri, 30 Sep 2011 12:31:05 -0400
+
+ncbi-blast+ (2.2.25-5) unstable; urgency=low
+
+  * Team upload.
+  * debian/patches/hurd_fixes: further patch configure(.ac) to reflect
+    -Wl,rpath,... support.  (Closes: #629656.)
+  * debian/patches/fix_lib_deps: link makembindex and srsearch against
+    libxconnect rather than libconnect for consistency with libblast,
+    which uses the former for consistency with other projects.
+
+ -- Aaron M. Ucko <ucko at debian.org>  Mon, 29 Aug 2011 12:31:05 -0400
+
+ncbi-blast+ (2.2.25-4) unstable; urgency=low
+
+  [ Aaron M. Ucko ]
+  * Team upload.
+  * debian/patches/support_other_cpus: belatedly add a descriptive header.
+  * debian/patches/hurd_fixes: new; fix hurd-specific issues.
+    (In conjunction with the following change, finally closes: #629656.)
+  * debian/control:
+    - Build-Depends += libc0.3-dev (>= 2.13-9~) [hurd-i386] to avoid #630180.
+    - Declare both binary packages as Multi-Arch: foreign.
+  * debian/patches/fix_lib_deps: new; ensure that all libraries link against
+    all direct dependencies.  (Break the dependency loop between libxblast
+    and libxalgoblastdbindex by having the former provide only the C++ BLAST
+    API, leaving the C core only in libblast.)  (Closes: #633567.)
+  * debian/rules: tweak LDFLAGS, supplying -Wl,--as-needed across the
+    board (as it is now safe to do so) and adding -Wl,--enable-new-dtags
+    to allow LD_LIBRARY_PATH to override the private rpath.
+  * debian/patches/no_multiarch_rpath: new; avoid redundant rpath entries
+    on multiarch systems (courtesy of overzealous logic to ensure
+    executables will be able to find libstdc++.)
+
+  [ Andreas Tille ]
+  * Enhances: t-coffee (as stated in tasks file)
+
+ -- Aaron M. Ucko <ucko at debian.org>  Sun, 28 Aug 2011 18:45:19 -0400
+
+ncbi-blast+ (2.2.25-3) unstable; urgency=low
+
+  * Team upload.
+  * debian/rules:
+    - Export MAKE to override an internal upstream build script that
+      otherwise incorrectly defaults to gmake on non-Linux
+      architectures. (Really closes: #629656, with any luck.)
+    - Force CONFIG_SHELL=/bin/bash to avoid lossage that can occur with zsh4
+      masquerading as ksh, which configure otherwise favors (due to complaints
+      from users with broken BASH_ENV scripts that change directories).
+
+ -- Aaron M. Ucko <ucko at debian.org>  Thu, 09 Jun 2011 19:25:45 -0400
+
+ncbi-blast+ (2.2.25-2) unstable; urgency=low
+
+  * Team upload.
+  * Fix several sources of build failures (closes: #629656):
+    - debian/rules (override_dh_install): Correctly support building only
+      architecture-dependent packages.
+      (DEB_CONFIGURE_EXTRA_FLAGS): Add --without-caution to override the
+      upstream build system's reluctance to build shared libraries on the
+      Hurd or kFreeBSD, which it doesn't specifically recognize.  Limit C++
+      optimization level to -O (rather than the default -O2) on mips(el),
+      on which g++ otherwise crashes. :-/
+    - debian/patches/support_other_cpus (new; committed upstream too):
+      build correctly on architectures that wound up defining
+      NCBI_SLOW_ATOMIC_SWAP (spuriously in the case of powerpc,
+      whose detection the patch fixes as well).
+
+ -- Aaron M. Ucko <ucko at debian.org>  Wed, 08 Jun 2011 21:42:52 -0400
+
+ncbi-blast+ (2.2.25-1) unstable; urgency=low
+
+  * Initial release (Closes: #624394) 
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr>  Wed, 08 Jun 2011 00:15:15 +0200

Deleted: trunk/packages/ncbi-blast+/tags/2.2.29-3/debian/control
===================================================================
--- trunk/packages/ncbi-blast+/trunk/debian/control	2014-06-30 15:02:48 UTC (rev 17377)
+++ trunk/packages/ncbi-blast+/tags/2.2.29-3/debian/control	2014-07-01 22:35:20 UTC (rev 17399)
@@ -1,50 +0,0 @@
-Source: ncbi-blast+
-Section: science
-Priority: optional
-Build-Depends: autotools-dev (>= 20100122),
-               debhelper (>= 9),
-               dpkg-dev (>= 1.16.1),
-               libboost-test-dev,
-               libbz2-dev,
-               libc0.3-dev (>= 2.13-9~) [hurd-i386],
-               libpcre3-dev,
-               quilt,
-               time,
-               zlib1g-dev
-Standards-Version: 3.9.4
-Uploaders: Olivier Sallou <osallou at debian.org>, Andreas Tille <tille at debian.org>
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/ncbi-blast+/trunk/
-Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/ncbi-blast+/trunk/
-
-Package: ncbi-blast+
-Architecture: any
-Enhances: t-coffee
-Depends: ncbi-data, python, ${misc:Depends}, ${perl:Depends}, ${shlibs:Depends}
-Multi-Arch: foreign
-Description: next generation suite of BLAST sequence search tools
- The Basic Local Alignment Search Tool (BLAST) is the most widely
- used sequence similarity tool. There are versions of BLAST that
- compare protein queries to protein databases, nucleotide queries
- to nucleotide databases, as well as versions that translate nucleotide
- queries or databases in all six frames and compare to protein databases
- or queries.
- PSI-BLAST produces a position-specific-scoring-matrix (PSSM) starting
- with a protein query, and then uses that PSSM to perform further searches.
- It is also possible to compare a protein or nucleotide query to a
- database of PSSM’s.
- The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as
- a network service.
-
-Package: ncbi-blast+-legacy
-Architecture: all
-Depends: ncbi-blast+, ${misc:Depends}
-Multi-Arch: foreign
-Description: NCBI Blast legacy call script
- This package adds some fake scripts to call NCBI+ programs
- with the NCBI blast command line. It makes use of the
- legacy_blast script in ncbi-blast+ package.
- .
- To use those scripts, /usr/share/ncbi-blast+/bin must be added
- to the PATH.

Copied: trunk/packages/ncbi-blast+/tags/2.2.29-3/debian/control (from rev 17378, trunk/packages/ncbi-blast+/trunk/debian/control)
===================================================================
--- trunk/packages/ncbi-blast+/tags/2.2.29-3/debian/control	                        (rev 0)
+++ trunk/packages/ncbi-blast+/tags/2.2.29-3/debian/control	2014-07-01 22:35:20 UTC (rev 17399)
@@ -0,0 +1,50 @@
+Source: ncbi-blast+
+Section: science
+Priority: optional
+Build-Depends: autotools-dev (>= 20100122),
+               debhelper (>= 9),
+               dpkg-dev (>= 1.16.1),
+               libboost-test-dev,
+               libbz2-dev,
+               libc0.3-dev (>= 2.13-9~) [hurd-i386],
+               libpcre3-dev,
+               quilt,
+               time,
+               zlib1g-dev
+Standards-Version: 3.9.5
+Uploaders: Olivier Sallou <osallou at debian.org>, Andreas Tille <tille at debian.org>
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/ncbi-blast+/trunk/
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/ncbi-blast+/trunk/
+
+Package: ncbi-blast+
+Architecture: any
+Enhances: t-coffee
+Depends: ncbi-data, python, ${misc:Depends}, ${perl:Depends}, ${shlibs:Depends}
+Multi-Arch: foreign
+Description: next generation suite of BLAST sequence search tools
+ The Basic Local Alignment Search Tool (BLAST) is the most widely
+ used sequence similarity tool. There are versions of BLAST that
+ compare protein queries to protein databases, nucleotide queries
+ to nucleotide databases, as well as versions that translate nucleotide
+ queries or databases in all six frames and compare to protein databases
+ or queries.
+ PSI-BLAST produces a position-specific-scoring-matrix (PSSM) starting
+ with a protein query, and then uses that PSSM to perform further searches.
+ It is also possible to compare a protein or nucleotide query to a
+ database of PSSM’s.
+ The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as
+ a network service.
+
+Package: ncbi-blast+-legacy
+Architecture: all
+Depends: ncbi-blast+, ${misc:Depends}
+Multi-Arch: foreign
+Description: NCBI Blast legacy call script
+ This package adds some fake scripts to call NCBI+ programs
+ with the NCBI blast command line. It makes use of the
+ legacy_blast script in ncbi-blast+ package.
+ .
+ To use those scripts, /usr/share/ncbi-blast+/bin must be added
+ to the PATH.




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