[med-svn] [tophat] branch master updated (7db9cbe -> 6b7bf03)

[Alex Mestiashvili]

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malex-guest pushed a change to branch master
in repository tophat.

      from  7db9cbe    d/watch: new url
       new  45857cd   Imported Upstream version 2.0.12+dfsg
       new  75fa290   Merge tag 'upstream/2.0.12+dfsg'
       new  5d46c62    d/changelog: new upstream release
       new  dfb42f5    d/patches: added patch from Manuel Holtgrewe resolving #733352   removed const_ness_part1.patch as the new patch solves the problem completely
       new  9fbdf45   d/patches: updated debian/patches/fix_includes_path.patch  to exclude SeqAn-1.3 from configure.ac d/control: new Homepage d/copyright: new Source
       new  2820574   d/watch: use dversionmangle to hide +dfsg suffix
       new  6b7bf03   d/changelog: upload to unstable

The 7 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 configure                                 | 24 +++++++++----------
 configure.ac                              |  2 +-
 debian/changelog                          | 14 +++++++++++
 debian/control                            |  2 +-
 debian/copyright                          |  4 ++--
 debian/patches/fix_build_w_seqan1.4.patch | 40 +++++++++++++++++++++++++++++++
 debian/patches/fix_includes_path.patch    | 11 +++++++++
 debian/patches/series                     |  2 +-
 debian/watch                              |  3 ++-
 src/segment_juncs.cpp                     |  2 +-
 src/tophat-fusion-post                    |  2 +-
 src/tophat.py                             |  3 +++
 12 files changed, 89 insertions(+), 20 deletions(-)
 create mode 100644 debian/patches/fix_build_w_seqan1.4.patch

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