[med-svn] r17418 - trunk/packages/R/r-bioc-bsgenome/trunk/debian

[Andreas Tille]

Author: tille
Date: 2014-07-08 08:20:26 +0000 (Tue, 08 Jul 2014)
New Revision: 17418

Modified:
   trunk/packages/R/r-bioc-bsgenome/trunk/debian/changelog
   trunk/packages/R/r-bioc-bsgenome/trunk/debian/control
   trunk/packages/R/r-bioc-bsgenome/trunk/debian/lintian-overrides
Log:
Versioned Build-Depends from r-bioc-rsamtools, fix lintian override


Modified: trunk/packages/R/r-bioc-bsgenome/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-bsgenome/trunk/debian/changelog	2014-07-08 05:52:29 UTC (rev 17417)
+++ trunk/packages/R/r-bioc-bsgenome/trunk/debian/changelog	2014-07-08 08:20:26 UTC (rev 17418)
@@ -1,11 +1,11 @@
-r-bioc-bsgenome (1.32.0-1) UNRELEASED; urgency=medium
+r-bioc-bsgenome (1.32.0-1) unstable; urgency=medium
 
   * New upstream version
   * cme fix dpkg-control
-  * add new (Build-)Depends: r-bioc-rsamtools
-  * versioned (Build-)Depends: r-bioc-genomicranges (>= 1.15.9)
+  * add new (Build-)Depends: r-bioc-rsamtools (>= 1.15)
+  * package is architecture "all"
 
- -- Andreas Tille <tille at debian.org>  Fri, 13 Jun 2014 13:49:57 +0200
+ -- Andreas Tille <tille at debian.org>  Tue, 08 Jul 2014 10:14:56 +0200
 
 r-bioc-bsgenome (1.30.0-1) unstable; urgency=low
 

Modified: trunk/packages/R/r-bioc-bsgenome/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-bsgenome/trunk/debian/control	2014-07-08 05:52:29 UTC (rev 17417)
+++ trunk/packages/R/r-bioc-bsgenome/trunk/debian/control	2014-07-08 08:20:26 UTC (rev 17418)
@@ -9,21 +9,20 @@
                r-bioc-iranges,
                r-bioc-biostrings,
                r-bioc-genomicranges (>= 1.15.9),
-               r-bioc-rsamtools
+               r-bioc-rsamtools (>= 1.15)
 Standards-Version: 3.9.5
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-bsgenome/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-bsgenome/trunk/
 Homepage: http://bioconductor.org/packages/release/bioc/html/BSgenome.html
 
 Package: r-bioc-bsgenome
-Architecture: any
+Architecture: all
 Depends: ${R:Depends},
-         ${shlibs:Depends},
          ${misc:Depends},
          r-bioc-iranges,
          r-bioc-biostrings,
          r-bioc-genomicranges (>= 1.15.9),
-         r-bioc-rsamtools
+         r-bioc-rsamtools (>= 1.15)
 Description: BioConductor infrastructure for Biostrings-based genome data packages
  This BioConductor module provides some basic infrastructure for
  Biostrings-based genome data packages.

Modified: trunk/packages/R/r-bioc-bsgenome/trunk/debian/lintian-overrides
===================================================================
--- trunk/packages/R/r-bioc-bsgenome/trunk/debian/lintian-overrides	2014-07-08 05:52:29 UTC (rev 17417)
+++ trunk/packages/R/r-bioc-bsgenome/trunk/debian/lintian-overrides	2014-07-08 08:20:26 UTC (rev 17418)
@@ -1,2 +1,3 @@
 # the empty directory is part of the template
-r-bioc-bsgenome: package-contains-empty-directory usr/lib/R/site-library/BSgenome/BSgenomeDataPkg-template/inst/extdata/
+r-bioc-bsgenome: package-contains-empty-directory usr/lib/R/site-library/BSgenome/pkgtemplates/BSgenome_datapkg/inst/extdata/
+r-bioc-bsgenome: package-contains-empty-directory usr/lib/R/site-library/BSgenome/pkgtemplates/MaskedBSgenome_datapkg/inst/extdata/