[med-svn] [r-cran-ape] 02/02: Merge tag 'upstream/3.1-3'

[Dylan Aïssi]

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bob.dybian-guest pushed a commit to branch master
in repository r-cran-ape.

commit 8317963da5b12216e36b56942cd33177f98a9642
Merge: 4304102 5b373e5
Author: Dylan Aïssi <bob.dybian at gmail.com>
Date:   Sat Jul 12 17:08:58 2014 +0200

    Merge tag 'upstream/3.1-3'
    
    Upstream version 3.1-3

 DESCRIPTION         |  82 +++++++++++++++++++++++++++-------------------------
 MD5                 |  30 ++++++++++---------
 NEWS                |  27 +++++++++++++++++
 R/nodelabels.R      |   8 ++---
 R/phymltest.R       |  13 +++++----
 R/read.GenBank.R    |   4 +--
 R/read.dna.R        |   9 ++++--
 R/root.R            |  12 ++++++--
 R/rotate.R          |  41 ++++++++++----------------
 R/rtt.R             |  59 +++++++++++++++++++++++++++++++++++++
 R/which.edge.R      |  47 ++++++++++--------------------
 inst/doc/MoranI.pdf | Bin 256525 -> 256305 bytes
 man/dist.dna.Rd     |   2 +-
 man/image.DNAbin.Rd |   1 +
 man/nodelabels.Rd   |   7 +++++
 man/rtt.Rd          |  74 +++++++++++++++++++++++++++++++++++++++++++++++
 man/which.edge.Rd   |  10 +++----
 17 files changed, 292 insertions(+), 134 deletions(-)

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