[med-svn] [r-cran-ape] branch upstream updated (8ab7815 -> 5b373e5)

[Dylan Aïssi]

This is an automated email from the git hooks/post-receive script.

bob.dybian-guest pushed a change to branch upstream
in repository r-cran-ape.

      from  8ab7815   Imported Upstream version 3.1-2
       new  5b373e5   Imported Upstream version 3.1-3

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DESCRIPTION         |  82 +++++++++++++++++++++++++++-------------------------
 MD5                 |  30 ++++++++++---------
 NEWS                |  27 +++++++++++++++++
 R/nodelabels.R      |   8 ++---
 R/phymltest.R       |  13 +++++----
 R/read.GenBank.R    |   4 +--
 R/read.dna.R        |   9 ++++--
 R/root.R            |  12 ++++++--
 R/rotate.R          |  41 ++++++++++----------------
 R/rtt.R             |  59 +++++++++++++++++++++++++++++++++++++
 R/which.edge.R      |  47 ++++++++++--------------------
 inst/doc/MoranI.pdf | Bin 256525 -> 256305 bytes
 man/dist.dna.Rd     |   2 +-
 man/image.DNAbin.Rd |   1 +
 man/nodelabels.Rd   |   7 +++++
 man/rtt.Rd          |  74 +++++++++++++++++++++++++++++++++++++++++++++++
 man/which.edge.Rd   |  10 +++----
 17 files changed, 292 insertions(+), 134 deletions(-)
 create mode 100644 R/rtt.R
 create mode 100644 man/rtt.Rd

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