[med-svn] r17510 - in trunk/packages/R: . r-bioc-snpstats r-bioc-snpstats/trunk r-bioc-snpstats/trunk/debian r-bioc-snpstats/trunk/debian/source

[Andreas Tille]

Author: tille
Date: 2014-07-24 08:16:18 +0000 (Thu, 24 Jul 2014)
New Revision: 17510

Added:
   trunk/packages/R/r-bioc-snpstats/
   trunk/packages/R/r-bioc-snpstats/trunk/
   trunk/packages/R/r-bioc-snpstats/trunk/debian/
   trunk/packages/R/r-bioc-snpstats/trunk/debian/changelog
   trunk/packages/R/r-bioc-snpstats/trunk/debian/compat
   trunk/packages/R/r-bioc-snpstats/trunk/debian/control
   trunk/packages/R/r-bioc-snpstats/trunk/debian/copyright
   trunk/packages/R/r-bioc-snpstats/trunk/debian/rules
   trunk/packages/R/r-bioc-snpstats/trunk/debian/source/
   trunk/packages/R/r-bioc-snpstats/trunk/debian/source/format
   trunk/packages/R/r-bioc-snpstats/trunk/debian/watch
Log:
Inject r-bioc-snpstats which is needed to run the full test suite of r-bioc-variantannotation


Added: trunk/packages/R/r-bioc-snpstats/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-snpstats/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/R/r-bioc-snpstats/trunk/debian/changelog	2014-07-24 08:16:18 UTC (rev 17510)
@@ -0,0 +1,5 @@
+r-bioc-snpstats (1.14.0-1) UNRELEASED; urgency=medium
+
+  * Initial release (closes: #???)
+
+ -- Andreas Tille <tille at debian.org>  Thu, 24 Jul 2014 09:03:52 +0200

Added: trunk/packages/R/r-bioc-snpstats/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-bioc-snpstats/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/R/r-bioc-snpstats/trunk/debian/compat	2014-07-24 08:16:18 UTC (rev 17510)
@@ -0,0 +1 @@
+9

Added: trunk/packages/R/r-bioc-snpstats/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-snpstats/trunk/debian/control	                        (rev 0)
+++ trunk/packages/R/r-bioc-snpstats/trunk/debian/control	2014-07-24 08:16:18 UTC (rev 17510)
@@ -0,0 +1,27 @@
+Source: r-bioc-snpstats
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               cdbs,
+               r-base-dev,
+               r-cran-survival,
+               r-cran-matrix,
+               r-bioc-biocgenerics
+Standards-Version: 3.9.5
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-snpstats/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-snpstats/trunk/
+Homepage: http://bioconductor.org/packages/release/bioc/html/snpStats.html
+
+Package: r-bioc-snpstats
+Architecture: any
+Depends: ${R:Depends},
+         ${misc:Depends},
+         ${shlibs:Depends},
+         r-cran-survival,
+         r-cran-matrix,
+         r-bioc-biocgenerics
+Description: BioConductor SnpMatrix and XSnpMatrix classes and methods
+ This BioConductor package provides R functions to work with
+ SnpMatrix and XSnpMatrix classes and methods.

Added: trunk/packages/R/r-bioc-snpstats/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-bioc-snpstats/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/R/r-bioc-snpstats/trunk/debian/copyright	2014-07-24 08:16:18 UTC (rev 17510)
@@ -0,0 +1,28 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: snpStats
+Upstream-Contact: David Clayton <dc208 at cam.ac.uk> 
+Source: http://bioconductor.org/packages/release/bioc/html/snpStats.html
+
+Files: *
+Copyright: 2006-2014 David Clayton <dc208 at cam.ac.uk>
+License: GPL-3
+
+Files: debian/*
+Copyright: 2014 Andreas Tille <tille at debian.org>
+License: GPL-3
+
+License: GPL-3
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, version 3.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program.  If not, see <http://www.gnu.org/licenses/>
+ .
+ On Debian systems, the complete text of the GNU General Public
+ License version 3 can be found in ‘/usr/share/common-licenses/GPL-3’.
\ No newline at end of file

Added: trunk/packages/R/r-bioc-snpstats/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-bioc-snpstats/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/R/r-bioc-snpstats/trunk/debian/rules	2014-07-24 08:16:18 UTC (rev 17510)
@@ -0,0 +1,4 @@
+#!/usr/bin/make -f
+
+debRreposname=bioc
+include /usr/share/R/debian/r-cran.mk


Property changes on: trunk/packages/R/r-bioc-snpstats/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/R/r-bioc-snpstats/trunk/debian/source/format
===================================================================
--- trunk/packages/R/r-bioc-snpstats/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/R/r-bioc-snpstats/trunk/debian/source/format	2014-07-24 08:16:18 UTC (rev 17510)
@@ -0,0 +1 @@
+3.0 (quilt)

Added: trunk/packages/R/r-bioc-snpstats/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-bioc-snpstats/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/R/r-bioc-snpstats/trunk/debian/watch	2014-07-24 08:16:18 UTC (rev 17510)
@@ -0,0 +1,3 @@
+version=3
+opts=downloadurlmangle=s/\.\./packages\/release\/bioc/ \
+ http://www.bioconductor.org/packages/release/bioc/html/snpStats.html .*/snpStats_([\d\.]+)\.tar\.gz