[med-svn] r17526 - trunk/packages/R/r-bioc-snpstats/trunk/debian

[Andreas Tille]

Author: tille
Date: 2014-07-25 11:46:15 +0000 (Fri, 25 Jul 2014)
New Revision: 17526

Added:
   trunk/packages/R/r-bioc-snpstats/trunk/debian/README.source
Log:
Add description of binary files


Added: trunk/packages/R/r-bioc-snpstats/trunk/debian/README.source
===================================================================
--- trunk/packages/R/r-bioc-snpstats/trunk/debian/README.source	                        (rev 0)
+++ trunk/packages/R/r-bioc-snpstats/trunk/debian/README.source	2014-07-25 11:46:15 UTC (rev 17526)
@@ -0,0 +1,47 @@
+Explanation for binary files inside source package according to
+  http://lists.debian.org/debian-devel/2013/09/msg00332.html
+
+Files: data/families.RData
+Description: man/snpStats-package.Rd
+  genotypes pedData to test for family association tests
+
+Files: data/for.exercise.RData
+Description: man/for.exercise.Rd
+  Data for exercise in use of the snpStats package
+  .
+  These data have been created artificially from publicly available
+  datasets. The SNPs have been selected from those genotyped by the
+  International HapMap Project (http://www.hapmap.org)
+
+Files: data/ld.example.RData
+Description: man/snpStats-package.Rd
+  Datasets to illustrate calculation of linkage
+  (ceph.1mb support.ld yri.1mb)
+
+Files: data/ld.example.RData
+Description: man/testdata.Rd
+  Test data for the snpStats package
+  .
+  This dataset comprises several data frames from a fictional (and
+  unrealistically small) study. The
+  dataset started off as real data from a screen of non-synonymous SNPs
+  for association with type 1 diabetes, but the original identifiers have
+  been removed and a random case/control status has been generated.
+
+Files: inst/extdata/sample.*
+Description: man/sample.Rd
+  Sample datasets to illustrate data input
+  .
+  The first five files concern data on 20 diallelic loci on 120
+  subjects. These data are 
+  distributed with the Haploview package (Barrett et al., 2003). The
+  sixth files contains a additional dataset of 18 SNPs in
+  100 subjects, coded in "long" format, and the seventh file duplicates
+  this dataset in an alternative long format. These seven files are used
+  in the data input
+  vignette. The final file is a sample imputed genotype
+  dataset distributed with the MACH imputation package, and used in the
+  imputation vignette.
+
+
+ -- Andreas Tille <tille at debian.org>  Thu, 24 Jul 2014 09:03:52 +0200