[med-svn] [r-bioc-cummerbund] branch upstream updated (1706774 -> 9ec4db0)

[Andreas Tille]

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tille pushed a change to branch upstream
in repository r-bioc-cummerbund.

      from  1706774   Imported Upstream version 2.4.1
       new  9ec4db0   Imported Upstream version 2.6.1

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DESCRIPTION                                        |  17 ++++++++++-------
 R/methods-CuffSet.R                                |   2 +-
 build/vignette.rds                                 | Bin 302 -> 302 bytes
 inst/doc/cummeRbund-example-workflow.pdf           | Bin 198250 -> 198250 bytes
 inst/doc/cummeRbund-manual.pdf                     | Bin 1545258 -> 1546156 bytes
 {inst/doc => vignettes}/ENCODE_SCV.pdf             | Bin
 {inst/doc => vignettes}/cuffData_schema.pdf        | Bin
 .../cummeRbund-example-workflow.Rnw                |   0
 {inst/doc => vignettes}/cummeRbund-manual.Rnw      |   0
 9 files changed, 11 insertions(+), 8 deletions(-)
 rename {inst/doc => vignettes}/ENCODE_SCV.pdf (100%)
 rename {inst/doc => vignettes}/cuffData_schema.pdf (100%)
 copy {inst/doc => vignettes}/cummeRbund-example-workflow.Rnw (100%)
 copy {inst/doc => vignettes}/cummeRbund-manual.Rnw (100%)

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