[med-svn] r17068 - in trunk/packages/R/r-bioc-affy/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2014-06-08 12:29:22 +0000 (Sun, 08 Jun 2014)
New Revision: 17068

Modified:
   trunk/packages/R/r-bioc-affy/trunk/debian/changelog
   trunk/packages/R/r-bioc-affy/trunk/debian/control
   trunk/packages/R/r-bioc-affy/trunk/debian/patches/use_debian_packaged_zlib.patch
Log:
New upstream version


Modified: trunk/packages/R/r-bioc-affy/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-affy/trunk/debian/changelog	2014-06-08 11:55:06 UTC (rev 17067)
+++ trunk/packages/R/r-bioc-affy/trunk/debian/changelog	2014-06-08 12:29:22 UTC (rev 17068)
@@ -1,3 +1,9 @@
+r-bioc-affy (1.42.2-1) UNRELEASED; urgency=medium
+
+  * New upstream version
+
+ -- Andreas Tille <tille at debian.org>  Sun, 08 Jun 2014 14:24:15 +0200
+
 r-bioc-affy (1.38.1-1) unstable; urgency=low
 
   * Initial release (closes: #721806)

Modified: trunk/packages/R/r-bioc-affy/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-affy/trunk/debian/control	2014-06-08 11:55:06 UTC (rev 17067)
+++ trunk/packages/R/r-bioc-affy/trunk/debian/control	2014-06-08 12:29:22 UTC (rev 17068)
@@ -11,7 +11,7 @@
                r-bioc-affyio,
                r-bioc-biocinstaller,
                r-bioc-preprocesscore
-Standards-Version: 3.9.4
+Standards-Version: 3.9.5
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-affy/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-affy/trunk/
 Homepage: http://bioconductor.org/packages/release/bioc/html/affy.html
@@ -29,4 +29,3 @@
 Description: BioConductor methods for Affymetrix Oligonucleotide Arrays
  This is part of the BioConductor GNU R suite.  The package contains
  functions for exploratory oligonucleotide array analysis. 
-

Modified: trunk/packages/R/r-bioc-affy/trunk/debian/patches/use_debian_packaged_zlib.patch
===================================================================
--- trunk/packages/R/r-bioc-affy/trunk/debian/patches/use_debian_packaged_zlib.patch	2014-06-08 11:55:06 UTC (rev 17067)
+++ trunk/packages/R/r-bioc-affy/trunk/debian/patches/use_debian_packaged_zlib.patch	2014-06-08 12:29:22 UTC (rev 17068)
@@ -1,23 +1,22 @@
 Author: Andreas Tille <tille at debian.org>
-LastChanged: Fri, 23 Aug 2013 12:11:49 +0200
+LastChanged: Sun, 08 Jun 2014 14:24:15 +0200
 Description: If the systems includes zlib natively there is no point in
  requiring the import of zlibbioc
 
---- a/DESCRIPTION
-+++ b/DESCRIPTION
-@@ -13,8 +13,7 @@ Author: Rafael A. Irizarry <rafa at jhu.edu
+--- affy.orig/DESCRIPTION
++++ affy/DESCRIPTION
+@@ -13,7 +13,7 @@
  Maintainer: Rafael A. Irizarry <rafa at jhu.edu>
  Depends: R (>= 2.8.0), BiocGenerics (>= 0.1.12), Biobase (>= 2.5.5)
- Imports: BiocGenerics, Biobase, affyio (>= 1.13.3), BiocInstaller,
--        graphics, grDevices, methods, preprocessCore, stats, utils,
--        zlibbioc
-+        graphics, grDevices, methods, preprocessCore, stats, utils
+ Imports: affyio (>= 1.13.3), BiocInstaller, graphics, grDevices,
+-        methods, preprocessCore, stats, utils, zlibbioc
++        methods, preprocessCore, stats, utils
  Suggests: tkWidgets (>= 1.19.0), affydata, widgetTools
  LinkingTo: preprocessCore
  Description: The package contains functions for exploratory
---- a/NAMESPACE
-+++ b/NAMESPACE
-@@ -4,8 +4,6 @@ importFrom(BiocGenerics, updateObject, c
+--- affy.orig/NAMESPACE
++++ affy/NAMESPACE
+@@ -4,8 +4,6 @@
  
  import(affyio)