[med-svn] r17078 - trunk/packages/R/r-bioc-annotationdbi/trunk/debian

[Andreas Tille]

Author: tille
Date: 2014-06-08 15:51:00 +0000 (Sun, 08 Jun 2014)
New Revision: 17078

Removed:
   trunk/packages/R/r-bioc-annotationdbi/trunk/debian/tests/
Modified:
   trunk/packages/R/r-bioc-annotationdbi/trunk/debian/README.test
   trunk/packages/R/r-bioc-annotationdbi/trunk/debian/changelog
   trunk/packages/R/r-bioc-annotationdbi/trunk/debian/control
Log:
New upstream version; Deactivate autopkgtest again since large database packages would be needed and creating these only for the purpose of testing is not very effective


Modified: trunk/packages/R/r-bioc-annotationdbi/trunk/debian/README.test
===================================================================
--- trunk/packages/R/r-bioc-annotationdbi/trunk/debian/README.test	2014-06-08 14:41:38 UTC (rev 17077)
+++ trunk/packages/R/r-bioc-annotationdbi/trunk/debian/README.test	2014-06-08 15:51:00 UTC (rev 17078)
@@ -8,4 +8,21 @@
 AnnotationDbi:::.test()
 EOT
 
-in order to confirm its integrity.
+in order to confirm its integrity.  However, to successfully run this
+testsuite you need to install several BioConductor databases.  There is
+some preparation to package these done at the following locations:
+
+   svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-reactome.db/trunk/
+   svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-hgu95av2.db/trunk/
+   svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-hom.hs.inp.db/trunk/
+   svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-org.tguttatatestingsubset.eg.db/trunk/
+   svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-org.at.tair.db/trunk/
+   svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-org.sc.sgd.db/trunk/
+   svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-go.db/trunk/
+
+You might like to decide whether you want to create these packages yourself
+locally or find any other means to install the relevant databases to run
+the test suite.  It was decided that creating Debian packages of large size
+just to run the test suite is not very sensible.
+
+ -- Andreas Tille <tille at debian.org>  Sun, 08 Jun 2014 17:46:30 +0200

Modified: trunk/packages/R/r-bioc-annotationdbi/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-annotationdbi/trunk/debian/changelog	2014-06-08 14:41:38 UTC (rev 17077)
+++ trunk/packages/R/r-bioc-annotationdbi/trunk/debian/changelog	2014-06-08 15:51:00 UTC (rev 17078)
@@ -1,21 +1,13 @@
-r-bioc-annotationdbi (1.24.0-2) UNRELEASED; urgency=medium
+r-bioc-annotationdbi (1.26.0-1) UNRELEASED; urgency=medium
 
-  [ Martin Pitt ]
-  * debian/tests/control: Add missing r-cran-runit test dependency, and allow
-    stderr output.
+  * New upstream version
+  * Deactivate autopkgtest again since large database packages would
+    be needed and creating these only for the purpose of testing is
+    not very effective
+    Closes: #735547
 
-  [ Andreas Tille ]
-  * TODO: Create packages of some BioC databases:
-       svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-reactome.db/trunk/
-       svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-hgu95av2.db/trunk/
-       svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-hom.hs.inp.db/trunk/
-       svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-org.tguttatatestingsubset.eg.db/trunk/
-       svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-org.at.tair.db/trunk/
-       svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-org.sc.sgd.db/trunk/
-       svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-go.db/trunk/
+ -- Andreas Tille <tille at debian.org>  Sun, 08 Jun 2014 17:46:30 +0200
 
- -- Andreas Tille <tille at debian.org>  Thu, 16 Jan 2014 14:07:52 +0100
-
 r-bioc-annotationdbi (1.24.0-1) unstable; urgency=medium
 
   * New upstream version

Modified: trunk/packages/R/r-bioc-annotationdbi/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-annotationdbi/trunk/debian/control	2014-06-08 14:41:38 UTC (rev 17077)
+++ trunk/packages/R/r-bioc-annotationdbi/trunk/debian/control	2014-06-08 15:51:00 UTC (rev 17078)
@@ -2,7 +2,6 @@
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Andreas Tille <tille at debian.org>
 Section: gnu-r
-XS-Testsuite: autopkgtest
 Priority: optional
 Build-Depends: debhelper (>= 9),
                cdbs,