[med-svn] r17100 - in trunk/packages/R/r-bioc-biostrings/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2014-06-10 07:31:09 +0000 (Tue, 10 Jun 2014)
New Revision: 17100

Added:
   trunk/packages/R/r-bioc-biostrings/trunk/debian/patches/
   trunk/packages/R/r-bioc-biostrings/trunk/debian/patches/series
   trunk/packages/R/r-bioc-biostrings/trunk/debian/patches/use_debian_packaged_zlib.patch
Modified:
   trunk/packages/R/r-bioc-biostrings/trunk/debian/changelog
   trunk/packages/R/r-bioc-biostrings/trunk/debian/control
Log:
Patch to use Debian packaged zlib; can not be uplaoded yet, needs more recent version of r-bioc-xvector


Modified: trunk/packages/R/r-bioc-biostrings/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-biostrings/trunk/debian/changelog	2014-06-10 07:06:22 UTC (rev 17099)
+++ trunk/packages/R/r-bioc-biostrings/trunk/debian/changelog	2014-06-10 07:31:09 UTC (rev 17100)
@@ -1,3 +1,10 @@
+r-bioc-biostrings (2.32.0-1) UNRELEASED; urgency=medium
+
+  * New upstream version
+  * Patch to use Debian packaged zlib
+
+ -- Andreas Tille <tille at debian.org>  Tue, 10 Jun 2014 09:25:24 +0200
+
 r-bioc-biostrings (2.30.1-1) unstable; urgency=low
 
   * New upstream version

Modified: trunk/packages/R/r-bioc-biostrings/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-biostrings/trunk/debian/control	2014-06-10 07:06:22 UTC (rev 17099)
+++ trunk/packages/R/r-bioc-biostrings/trunk/debian/control	2014-06-10 07:31:09 UTC (rev 17100)
@@ -8,7 +8,7 @@
                r-base-dev,
                r-bioc-iranges,
                r-bioc-xvector
-Standards-Version: 3.9.4
+Standards-Version: 3.9.5
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-biostrings/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-biostrings/trunk/
 Homepage: http://bioconductor.org/packages/release/bioc/html/Biostrings.html
@@ -24,4 +24,3 @@
  Memory efficient string containers, string matching algorithms, and other
  utilities, for fast manipulation of large biological sequences or set of
  sequences.
-

Added: trunk/packages/R/r-bioc-biostrings/trunk/debian/patches/series
===================================================================
--- trunk/packages/R/r-bioc-biostrings/trunk/debian/patches/series	                        (rev 0)
+++ trunk/packages/R/r-bioc-biostrings/trunk/debian/patches/series	2014-06-10 07:31:09 UTC (rev 17100)
@@ -0,0 +1 @@
+use_debian_packaged_zlib.patch

Added: trunk/packages/R/r-bioc-biostrings/trunk/debian/patches/use_debian_packaged_zlib.patch
===================================================================
--- trunk/packages/R/r-bioc-biostrings/trunk/debian/patches/use_debian_packaged_zlib.patch	                        (rev 0)
+++ trunk/packages/R/r-bioc-biostrings/trunk/debian/patches/use_debian_packaged_zlib.patch	2014-06-10 07:31:09 UTC (rev 17100)
@@ -0,0 +1,21 @@
+--- a/DESCRIPTION
++++ b/DESCRIPTION
+@@ -12,7 +12,7 @@ biocViews: SequenceMatching, Genetics, S
+ Depends: R (>= 2.8.0), methods, BiocGenerics (>= 0.5.4), IRanges (>=
+         1.21.35), XVector (>= 0.3.6)
+ Imports: graphics, methods, stats, utils, BiocGenerics, IRanges,
+-        XVector, zlibbioc
++        XVector
+ LinkingTo: IRanges, XVector
+ Enhances: Rmpi
+ Suggests: BSgenome (>= 1.13.14), BSgenome.Celegans.UCSC.ce2 (>=
+--- a/NAMESPACE
++++ b/NAMESPACE
+@@ -19,7 +19,6 @@ importFrom(utils,
+ import(BiocGenerics)
+ import(IRanges)
+ import(XVector)
+-import(zlibbioc)
+ 
+ 
+ ### ==========================================================================