[med-svn] [r-bioc-biocgenerics] branch master updated (686db85 -> 6a83181)

[Andreas Tille]

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tille pushed a change to branch master
in repository r-bioc-biocgenerics.

      from  686db85   Upload to unstable
       new  9e63e97   Imported Upstream version 0.10.0
       new  2912cc1   Merge tag 'upstream/0.10.0'
       new  9c0e059   New upstream version
       new  4b0afd5   cme fix dpkg-control
       new  6a83181   Upload to unstable

The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DESCRIPTION                     | 29 ++++++++--------
 NAMESPACE                       | 26 ++++++++++++--
 R/{tapply.R => do.call.R}       |  6 ++--
 R/{image.R => relist.R}         |  6 ++--
 R/show-utils.R                  |  4 ++-
 R/strand.R                      |  6 ++++
 debian/changelog                |  6 ++++
 debian/control                  |  3 +-
 man/BiocGenerics-package.Rd     | 37 ++++++++++++--------
 man/Extremes.Rd                 | 10 +++---
 man/S3-classes-as-S4-classes.Rd |  4 +--
 man/annotation.Rd               |  4 +--
 man/append.Rd                   | 12 +++----
 man/as.data.frame.Rd            | 14 ++++----
 man/as.vector.Rd                | 12 +++----
 man/boxplot.Rd                  |  8 ++---
 man/cbind.Rd                    |  8 ++---
 man/clusterApply.Rd             |  6 ++--
 man/combine.Rd                  | 10 +++---
 man/density.Rd                  | 12 +++----
 man/dge.Rd                      |  2 +-
 man/do.call.Rd                  | 75 +++++++++++++++++++++++++++++++++++++++++
 man/duplicated.Rd               | 12 +++----
 man/eval.Rd                     | 10 +++---
 man/evalq.Rd                    |  4 +--
 man/funprog.Rd                  |  8 ++---
 man/get.Rd                      |  8 ++---
 man/image.Rd                    |  8 ++---
 man/is.unsorted.Rd              | 25 ++++++--------
 man/lapply.Rd                   |  8 ++---
 man/mapply.Rd                   |  8 ++---
 man/match.Rd                    | 12 +++----
 man/normalize.Rd                | 12 +++----
 man/nrow.Rd                     |  9 ++---
 man/order.Rd                    |  8 ++---
 man/paste.Rd                    |  8 ++---
 man/plotMA.Rd                   |  4 +--
 man/rank.Rd                     |  8 ++---
 man/relist.Rd                   | 64 +++++++++++++++++++++++++++++++++++
 man/rep.Rd                      |  8 ++---
 man/residuals.Rd                |  8 ++---
 man/row_colnames.Rd             | 12 +++----
 man/sets.Rd                     | 18 +++++-----
 man/sort.Rd                     |  8 ++---
 man/strand.Rd                   | 28 ++++++++++-----
 man/table.Rd                    |  8 ++---
 man/tapply.Rd                   | 31 ++++++++++++-----
 man/unique.Rd                   |  8 ++---
 man/unlist.Rd                   |  8 ++---
 man/updateObject.Rd             |  6 ++--
 man/weights.Rd                  |  8 ++---
 man/xtabs.Rd                    |  8 ++---
 52 files changed, 438 insertions(+), 237 deletions(-)
 copy R/{tapply.R => do.call.R} (81%)
 copy R/{image.R => relist.R} (66%)
 create mode 100644 man/do.call.Rd
 create mode 100644 man/relist.Rd

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