[med-svn] [r-bioc-biocgenerics] branch upstream updated (cbaf052 -> 9e63e97)

[Andreas Tille]

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tille pushed a change to branch upstream
in repository r-bioc-biocgenerics.

      from  cbaf052   Imported Upstream version 0.8.0
       new  9e63e97   Imported Upstream version 0.10.0

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DESCRIPTION                     | 29 ++++++++--------
 NAMESPACE                       | 26 ++++++++++++--
 R/{tapply.R => do.call.R}       |  6 ++--
 R/{image.R => relist.R}         |  6 ++--
 R/show-utils.R                  |  4 ++-
 R/strand.R                      |  6 ++++
 man/BiocGenerics-package.Rd     | 37 ++++++++++++--------
 man/Extremes.Rd                 | 10 +++---
 man/S3-classes-as-S4-classes.Rd |  4 +--
 man/annotation.Rd               |  4 +--
 man/append.Rd                   | 12 +++----
 man/as.data.frame.Rd            | 14 ++++----
 man/as.vector.Rd                | 12 +++----
 man/boxplot.Rd                  |  8 ++---
 man/cbind.Rd                    |  8 ++---
 man/clusterApply.Rd             |  6 ++--
 man/combine.Rd                  | 10 +++---
 man/density.Rd                  | 12 +++----
 man/dge.Rd                      |  2 +-
 man/do.call.Rd                  | 75 +++++++++++++++++++++++++++++++++++++++++
 man/duplicated.Rd               | 12 +++----
 man/eval.Rd                     | 10 +++---
 man/evalq.Rd                    |  4 +--
 man/funprog.Rd                  |  8 ++---
 man/get.Rd                      |  8 ++---
 man/image.Rd                    |  8 ++---
 man/is.unsorted.Rd              | 25 ++++++--------
 man/lapply.Rd                   |  8 ++---
 man/mapply.Rd                   |  8 ++---
 man/match.Rd                    | 12 +++----
 man/normalize.Rd                | 12 +++----
 man/nrow.Rd                     |  9 ++---
 man/order.Rd                    |  8 ++---
 man/paste.Rd                    |  8 ++---
 man/plotMA.Rd                   |  4 +--
 man/rank.Rd                     |  8 ++---
 man/relist.Rd                   | 64 +++++++++++++++++++++++++++++++++++
 man/rep.Rd                      |  8 ++---
 man/residuals.Rd                |  8 ++---
 man/row_colnames.Rd             | 12 +++----
 man/sets.Rd                     | 18 +++++-----
 man/sort.Rd                     |  8 ++---
 man/strand.Rd                   | 28 ++++++++++-----
 man/table.Rd                    |  8 ++---
 man/tapply.Rd                   | 31 ++++++++++++-----
 man/unique.Rd                   |  8 ++---
 man/unlist.Rd                   |  8 ++---
 man/updateObject.Rd             |  6 ++--
 man/weights.Rd                  |  8 ++---
 man/xtabs.Rd                    |  8 ++---
 50 files changed, 431 insertions(+), 235 deletions(-)
 copy R/{tapply.R => do.call.R} (81%)
 copy R/{image.R => relist.R} (66%)
 create mode 100644 man/do.call.Rd
 create mode 100644 man/relist.Rd

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