[med-svn] r17159 - in trunk/packages/R: . r-cran-bbmisc r-cran-bbmisc/trunk r-cran-bbmisc/trunk/debian r-cran-bbmisc/trunk/debian/source r-cran-bbmisc/trunk/debian/tests

Fri Jun 13 23:08:20 UTC 2014

Author: tille
Date: 2014-06-13 23:08:20 +0000 (Fri, 13 Jun 2014)
New Revision: 17159

Added:
   trunk/packages/R/r-cran-bbmisc/
   trunk/packages/R/r-cran-bbmisc/trunk/
   trunk/packages/R/r-cran-bbmisc/trunk/debian/
   trunk/packages/R/r-cran-bbmisc/trunk/debian/README.test
   trunk/packages/R/r-cran-bbmisc/trunk/debian/changelog
   trunk/packages/R/r-cran-bbmisc/trunk/debian/compat
   trunk/packages/R/r-cran-bbmisc/trunk/debian/control
   trunk/packages/R/r-cran-bbmisc/trunk/debian/copyright
   trunk/packages/R/r-cran-bbmisc/trunk/debian/docs
   trunk/packages/R/r-cran-bbmisc/trunk/debian/rules
   trunk/packages/R/r-cran-bbmisc/trunk/debian/source/
   trunk/packages/R/r-cran-bbmisc/trunk/debian/source/format
   trunk/packages/R/r-cran-bbmisc/trunk/debian/tests/
   trunk/packages/R/r-cran-bbmisc/trunk/debian/tests/control
   trunk/packages/R/r-cran-bbmisc/trunk/debian/tests/run-unit-test
   trunk/packages/R/r-cran-bbmisc/trunk/debian/watch
Log:
Add new pre-dependency for BioConductor packages


Added: trunk/packages/R/r-cran-bbmisc/trunk/debian/README.test
===================================================================

--- trunk/packages/R/r-cran-bbmisc/trunk/debian/README.test	                        (rev 0)
+++ trunk/packages/R/r-cran-bbmisc/trunk/debian/README.test	2014-06-13 23:08:20 UTC (rev 17159)
@@ -0,0 +1,11 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by running the provided test:
+
+LC_ALL=C R --no-save <<EOT
+library(testthat)
+test_check("BBmisc")
+EOT
+
+in order to confirm its integrity.

Added: trunk/packages/R/r-cran-bbmisc/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-bbmisc/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/R/r-cran-bbmisc/trunk/debian/changelog	2014-06-13 23:08:20 UTC (rev 17159)
@@ -0,0 +1,5 @@
+r-cran-bbmisc (1.6-1) UNRELEASED; urgency=low
+
+  * Initial release (Closes: #)
+
+ -- Andreas Tille <tille at debian.org>  Fri, 13 Jun 2014 22:52:06 +0200

Added: trunk/packages/R/r-cran-bbmisc/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-cran-bbmisc/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/R/r-cran-bbmisc/trunk/debian/compat	2014-06-13 23:08:20 UTC (rev 17159)
@@ -0,0 +1 @@
+9

Added: trunk/packages/R/r-cran-bbmisc/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-bbmisc/trunk/debian/control	                        (rev 0)
+++ trunk/packages/R/r-cran-bbmisc/trunk/debian/control	2014-06-13 23:08:20 UTC (rev 17159)
@@ -0,0 +1,21 @@
+Source: r-cran-bbmisc
+Maintainer: Debian Science Team <debian-science-maintainers at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+Testsuite: autopkgtest
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               cdbs,
+               r-base-dev (>= 3.0.0)
+Standards-Version: 3.9.5
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/packages/trunk/R/r-cran-bbmisc/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-bbmisc/trunk/
+Homepage: http://cran.r-project.org/web/packages/BBmisc/
+
+Package: r-cran-bbmisc
+Architecture: any
+Depends: ${shlibs:Depends},
+         ${R:Depends}
+Description: GNU R Miscellaneous helper functions for B. Bischl
+ Miscellaneous helper functions for and from B. Bischl and some other
+ guys at TU Dortmund, mainly for package development.

Added: trunk/packages/R/r-cran-bbmisc/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-bbmisc/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/R/r-cran-bbmisc/trunk/debian/copyright	2014-06-13 23:08:20 UTC (rev 17159)
@@ -0,0 +1,42 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: BBmisc
+Upstream-Contact: Bernd Bischl <bernd_bischl at gmx.net>
+Source: http://cran.r-project.org/web/packages/BBmisc/
+
+Files: *
+Copyright: 2012-2014 Bernd Bischl, Michel Lang, Olaf Mersmann
+License: BSD3clause
+
+Files: debian/*
+Copyright: 2014 Andreas Tille <tille at debian.org>
+License: BSD3clause
+
+License: BSD3clause
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are
+ met:
+ .
+    Redistributions of source code must retain the above copyright
+    notice, this list of conditions and the following disclaimer.
+ .
+    Redistributions in binary form must reproduce the above copyright
+    notice, this list of conditions and the following disclaimer in
+    the documentation and/or other materials provided with the
+    distribution.
+ .
+    Neither the name of the <ORGANIZATION> nor the names of its
+    contributors may be used to endorse or promote products derived
+    from this software without specific prior written permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+ "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+ LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
+ A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
+ HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+ LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+ DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
+ THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+ OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+

Added: trunk/packages/R/r-cran-bbmisc/trunk/debian/docs
===================================================================
--- trunk/packages/R/r-cran-bbmisc/trunk/debian/docs	                        (rev 0)
+++ trunk/packages/R/r-cran-bbmisc/trunk/debian/docs	2014-06-13 23:08:20 UTC (rev 17159)
@@ -0,0 +1,3 @@
+tests
+debian/README.test
+debian/tests/run-unit-test

Added: trunk/packages/R/r-cran-bbmisc/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-cran-bbmisc/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/R/r-cran-bbmisc/trunk/debian/rules	2014-06-13 23:08:20 UTC (rev 17159)
@@ -0,0 +1,7 @@
+#!/usr/bin/make -f
+# 							-*- makefile -*-
+
+include /usr/share/R/debian/r-cran.mk
+
+install/$(package)::
+	rm -rf debian/$(package)/usr/lib/R/site-library/$(cranName)/LICENSE


Property changes on: trunk/packages/R/r-cran-bbmisc/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/R/r-cran-bbmisc/trunk/debian/source/format
===================================================================
--- trunk/packages/R/r-cran-bbmisc/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/R/r-cran-bbmisc/trunk/debian/source/format	2014-06-13 23:08:20 UTC (rev 17159)
@@ -0,0 +1 @@
+3.0 (quilt)

Added: trunk/packages/R/r-cran-bbmisc/trunk/debian/tests/control
===================================================================
--- trunk/packages/R/r-cran-bbmisc/trunk/debian/tests/control	                        (rev 0)
+++ trunk/packages/R/r-cran-bbmisc/trunk/debian/tests/control	2014-06-13 23:08:20 UTC (rev 17159)
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @, r-cran-testthat
+Restrictions: allow-stderr

Added: trunk/packages/R/r-cran-bbmisc/trunk/debian/tests/run-unit-test
===================================================================
--- trunk/packages/R/r-cran-bbmisc/trunk/debian/tests/run-unit-test	                        (rev 0)
+++ trunk/packages/R/r-cran-bbmisc/trunk/debian/tests/run-unit-test	2014-06-13 23:08:20 UTC (rev 17159)
@@ -0,0 +1,14 @@
+#!/bin/sh -e
+
+pkg=r-bioc-bbmisc
+if [ "$ADTTMP" = "" ] ; then
+  ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+fi
+cd $ADTTMP
+cp -a /usr/share/doc/r-cran-bbmisc/tests/* $ADTTMP
+gunzip -r *
+LC_ALL=C R --no-save <<EOT
+library(testthat)
+test_check("BBmisc")
+EOT
+rm -f $ADTTMP/*

Added: trunk/packages/R/r-cran-bbmisc/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-cran-bbmisc/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/R/r-cran-bbmisc/trunk/debian/watch	2014-06-13 23:08:20 UTC (rev 17159)
@@ -0,0 +1,2 @@
+version=3
+http://cran.r-project.org/src/contrib/BBmisc_([-\d.]*)\.tar\.gz


