[med-svn] r17232 - in trunk/packages/R/r-bioc-preprocesscore/trunk/debian: . tests

[Andreas Tille]

Author: tille
Date: 2014-06-19 13:57:57 +0000 (Thu, 19 Jun 2014)
New Revision: 17232

Added:
   trunk/packages/R/r-bioc-preprocesscore/trunk/debian/tests/
   trunk/packages/R/r-bioc-preprocesscore/trunk/debian/tests/control
   trunk/packages/R/r-bioc-preprocesscore/trunk/debian/tests/run-unit-test
Modified:
   trunk/packages/R/r-bioc-preprocesscore/trunk/debian/README.test
   trunk/packages/R/r-bioc-preprocesscore/trunk/debian/changelog
   trunk/packages/R/r-bioc-preprocesscore/trunk/debian/control
   trunk/packages/R/r-bioc-preprocesscore/trunk/debian/docs
Log:
New upstream, added autopkgtest


Modified: trunk/packages/R/r-bioc-preprocesscore/trunk/debian/README.test
===================================================================
--- trunk/packages/R/r-bioc-preprocesscore/trunk/debian/README.test	2014-06-19 13:50:12 UTC (rev 17231)
+++ trunk/packages/R/r-bioc-preprocesscore/trunk/debian/README.test	2014-06-19 13:57:57 UTC (rev 17232)
@@ -1,5 +1,8 @@
 Notes on how this package can be tested.
 ────────────────────────────────────────
 
-This package can be tested by loading it into R with the command
-‘library(preprocessCore)’ in order to confirm its integrity.
+To run the unit tests provided by the package you can do
+
+   sh  run-unit-test
+
+in this directory.

Modified: trunk/packages/R/r-bioc-preprocesscore/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-preprocesscore/trunk/debian/changelog	2014-06-19 13:50:12 UTC (rev 17231)
+++ trunk/packages/R/r-bioc-preprocesscore/trunk/debian/changelog	2014-06-19 13:57:57 UTC (rev 17232)
@@ -1,9 +1,11 @@
-r-bioc-preprocesscore (1.24.0-1) UNRELEASED; urgency=low
+r-bioc-preprocesscore (1.26.1-1) unstable; urgency=low
 
   * New upstream version
   * debian/{control,copyright}: Fixed homepage
+  * cme fix dpkg-control
+  * add autookgtest
 
- -- Andreas Tille <tille at debian.org>  Fri, 18 Oct 2013 11:12:13 +0200
+ -- Andreas Tille <tille at debian.org>  Thu, 19 Jun 2014 15:50:14 +0200
 
 r-bioc-preprocesscore (1.22.0-1) unstable; urgency=low
 

Modified: trunk/packages/R/r-bioc-preprocesscore/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-preprocesscore/trunk/debian/control	2014-06-19 13:50:12 UTC (rev 17231)
+++ trunk/packages/R/r-bioc-preprocesscore/trunk/debian/control	2014-06-19 13:57:57 UTC (rev 17232)
@@ -3,10 +3,11 @@
 Uploaders: Andreas Tille <tille at debian.org>
 Section: gnu-r
 Priority: optional
+Testsuite: autopkgtest
 Build-Depends: debhelper (>= 9),
                cdbs,
                r-base-dev
-Standards-Version: 3.9.4
+Standards-Version: 3.9.5
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-preprocesscore/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-preprocesscore/trunk/
 Homepage: http://bioconductor.org/packages/release/bioc/html/preprocessCore.html
@@ -19,4 +20,3 @@
 Description: BioConductor collection of pre-processing functions
  This BioConductor module contains a library of pre-processing
  functions.  It is imported by several other BioConductor modules.
-

Modified: trunk/packages/R/r-bioc-preprocesscore/trunk/debian/docs
===================================================================
--- trunk/packages/R/r-bioc-preprocesscore/trunk/debian/docs	2014-06-19 13:50:12 UTC (rev 17231)
+++ trunk/packages/R/r-bioc-preprocesscore/trunk/debian/docs	2014-06-19 13:57:57 UTC (rev 17232)
@@ -1 +1,3 @@
 debian/README.test
+debian/tests/run-unit-test
+tests

Added: trunk/packages/R/r-bioc-preprocesscore/trunk/debian/tests/control
===================================================================
--- trunk/packages/R/r-bioc-preprocesscore/trunk/debian/tests/control	                        (rev 0)
+++ trunk/packages/R/r-bioc-preprocesscore/trunk/debian/tests/control	2014-06-19 13:57:57 UTC (rev 17232)
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @, r-cran-runit
+Restrictions: allow-stderr

Added: trunk/packages/R/r-bioc-preprocesscore/trunk/debian/tests/run-unit-test
===================================================================
--- trunk/packages/R/r-bioc-preprocesscore/trunk/debian/tests/run-unit-test	                        (rev 0)
+++ trunk/packages/R/r-bioc-preprocesscore/trunk/debian/tests/run-unit-test	2014-06-19 13:57:57 UTC (rev 17232)
@@ -0,0 +1,12 @@
+#!/bin/sh -e
+
+pkg=r-bioc-preprocesscore
+if [ "$ADTTMP" = "" ] ; then
+  ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+fi
+cd $ADTTMP
+cp /usr/share/doc/${pkg}/tests/* $ADTTMP
+for runtest in `ls *.R` ; do
+    R --no-save < $runtest
+done
+rm -f $ADTTMP/*