[med-svn] r17329 - in trunk/packages/R/r-other-bio3d/trunk/debian: . tests

[Andreas Tille]

Author: tille
Date: 2014-06-29 10:43:51 +0000 (Sun, 29 Jun 2014)
New Revision: 17329

Added:
   trunk/packages/R/r-other-bio3d/trunk/debian/docs
   trunk/packages/R/r-other-bio3d/trunk/debian/tests/
   trunk/packages/R/r-other-bio3d/trunk/debian/tests/control
   trunk/packages/R/r-other-bio3d/trunk/debian/tests/run-unit-test
Modified:
   trunk/packages/R/r-other-bio3d/trunk/debian/README.test
   trunk/packages/R/r-other-bio3d/trunk/debian/changelog
   trunk/packages/R/r-other-bio3d/trunk/debian/control
Log:
Add unit testing (need to sort out partly failing test before upload)


Modified: trunk/packages/R/r-other-bio3d/trunk/debian/README.test
===================================================================
--- trunk/packages/R/r-other-bio3d/trunk/debian/README.test	2014-06-29 10:01:29 UTC (rev 17328)
+++ trunk/packages/R/r-other-bio3d/trunk/debian/README.test	2014-06-29 10:43:51 UTC (rev 17329)
@@ -1,7 +1,12 @@
-Notes on how this package is tested.
-────────────────────────────────────
+Notes on how this package can be tested.
+────────────────────────────────────────
 
-After building on the maintainer's computer, this package was locally installed
-and the library loaded into R in order to confirm its integrity.
+To run the unit tests provided by the package you can do
 
- -- Charles Plessy <plessy at debian.org>  Thu, 25 Mar 2010 13:57:34 +0900
+LC_ALL=C R --no-save <<EOT
+library(testthat)
+library(bio3d)
+test_package("bio3d")
+EOT
+
+ -- Andreas Tille <tille at debian.org>  Fri, 27 Jun 2014 19:02:17 +0200

Modified: trunk/packages/R/r-other-bio3d/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-other-bio3d/trunk/debian/changelog	2014-06-29 10:01:29 UTC (rev 17328)
+++ trunk/packages/R/r-other-bio3d/trunk/debian/changelog	2014-06-29 10:43:51 UTC (rev 17329)
@@ -8,6 +8,11 @@
   * Adapted watch file
   * Moved debian/upstream to debian/upstream/metadata
   * cme fix dpkg-control
+  * add autopkgtest
+  TODO: Need to sort out issue 
+    5. Error: get.pdb() with ncore>1 works properly --------------------------------
+    could not find function "readChildren"
+  with upstream
 
  -- Andreas Tille <tille at debian.org>  Sun, 29 Jun 2014 10:04:12 +0200
 

Modified: trunk/packages/R/r-other-bio3d/trunk/debian/control
===================================================================
--- trunk/packages/R/r-other-bio3d/trunk/debian/control	2014-06-29 10:01:29 UTC (rev 17328)
+++ trunk/packages/R/r-other-bio3d/trunk/debian/control	2014-06-29 10:43:51 UTC (rev 17329)
@@ -4,6 +4,7 @@
            Andreas Tille <tille at debian.org>
 Section: gnu-r
 Priority: optional
+Testsuite: autopkgtest
 Build-Depends: debhelper (>= 9),
                cdbs,
                r-base-dev

Added: trunk/packages/R/r-other-bio3d/trunk/debian/docs
===================================================================
--- trunk/packages/R/r-other-bio3d/trunk/debian/docs	                        (rev 0)
+++ trunk/packages/R/r-other-bio3d/trunk/debian/docs	2014-06-29 10:43:51 UTC (rev 17329)
@@ -0,0 +1,2 @@
+debian/README.test
+debian/tests/run-unit-test

Added: trunk/packages/R/r-other-bio3d/trunk/debian/tests/control
===================================================================
--- trunk/packages/R/r-other-bio3d/trunk/debian/tests/control	                        (rev 0)
+++ trunk/packages/R/r-other-bio3d/trunk/debian/tests/control	2014-06-29 10:43:51 UTC (rev 17329)
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @, r-cran-testthat
+Restrictions: allow-stderr

Added: trunk/packages/R/r-other-bio3d/trunk/debian/tests/run-unit-test
===================================================================
--- trunk/packages/R/r-other-bio3d/trunk/debian/tests/run-unit-test	                        (rev 0)
+++ trunk/packages/R/r-other-bio3d/trunk/debian/tests/run-unit-test	2014-06-29 10:43:51 UTC (rev 17329)
@@ -0,0 +1,8 @@
+#!/bin/sh -e
+
+LC_ALL=C R --no-save <<EOT
+library(testthat)
+library(bio3d)
+test_package("bio3d")
+EOT
+