[med-svn] r16394 - trunk/packages/python-biopython/trunk/debian

[Andreas Tille]

Author: tille
Date: 2014-03-06 10:45:32 +0000 (Thu, 06 Mar 2014)
New Revision: 16394

Modified:
   trunk/packages/python-biopython/trunk/debian/README.source
   trunk/packages/python-biopython/trunk/debian/rules
Log:
Exclude another test relying on non-free software


Modified: trunk/packages/python-biopython/trunk/debian/README.source
===================================================================
--- trunk/packages/python-biopython/trunk/debian/README.source	2014-03-06 10:44:56 UTC (rev 16393)
+++ trunk/packages/python-biopython/trunk/debian/README.source	2014-03-06 10:45:32 UTC (rev 16394)
@@ -11,6 +11,16 @@
 debian/rules file.  Please look there if you want to know what tests
 are affected.
 
+
+The non-free tools (item 2.) which are packaged are:
+
+  paml            for test_PAML_tools.py
+  embassy-phylip  for test_EmbossPhylipNew.py
+
+you might like to install these manually if you are interested in these
+tests.
+
+
 The tools which are not packaged yet (item 3.) are:
 
   MSAProbs:  http://msaprobs.sourceforge.net/

Modified: trunk/packages/python-biopython/trunk/debian/rules
===================================================================
--- trunk/packages/python-biopython/trunk/debian/rules	2014-03-06 10:44:56 UTC (rev 16393)
+++ trunk/packages/python-biopython/trunk/debian/rules	2014-03-06 10:45:32 UTC (rev 16394)
@@ -17,14 +17,14 @@
 
 override_dh_auto_test:
 	# 1. avoid some tests which need online access
-	# 2. avoid PAML_tools since paml is non-free
+	# 2. avoid PAML_tools and EmbossPhylipNew since paml resp. embassy-phylip are non-free
 	# 3. avoid testing tools that are not packaged for Debian yet
         # While 2. and 3. do not create errors there is no point in bloating
 	# the build log and this kind of documentation makes things more transparent
 	mkdir -p Tests_avoid
 	for avoid in \
 			Entrez_online HotRand NCBI_qblast SCOP_online SeqIO_online TogoWS \
-			PAML_tools \
+			PAML_tools EmbossPhylipNew \
 			MSAProbs_tool NACCESS_tool PopGen_DFDist PopGen_FDist PopGen_GenePop PopGen_GenePop_EasyController PopGen_SimCoal XXmotif_tool \
 		    ; do \
 	    mv Tests/test_$${avoid}.py Tests_avoid ; \