[med-svn] r16424 - trunk/packages/python-biopython/trunk/debian

[Andreas Tille]

Author: tille
Date: 2014-03-11 22:01:36 +0000 (Tue, 11 Mar 2014)
New Revision: 16424

Modified:
   trunk/packages/python-biopython/trunk/debian/control
   trunk/packages/python-biopython/trunk/debian/rules
Log:
Run bwa test on amd64 architectures


Modified: trunk/packages/python-biopython/trunk/debian/control
===================================================================
--- trunk/packages/python-biopython/trunk/debian/control	2014-03-11 21:02:23 UTC (rev 16423)
+++ trunk/packages/python-biopython/trunk/debian/control	2014-03-11 22:01:36 UTC (rev 16424)
@@ -14,6 +14,7 @@
                python-numpy,
                python3-reportlab,
                python3-numpy,
+               bwa [any-amd64],
                clustalo,
                clustalw,
                dialign,

Modified: trunk/packages/python-biopython/trunk/debian/rules
===================================================================
--- trunk/packages/python-biopython/trunk/debian/rules	2014-03-11 21:02:23 UTC (rev 16423)
+++ trunk/packages/python-biopython/trunk/debian/rules	2014-03-11 22:01:36 UTC (rev 16424)
@@ -7,6 +7,13 @@
 #export PYBUILD_DESTDIR_python2=debian/python-biopython/
 #export PYBUILD_DESTDIR_python3=debian/python3-biopython/
 
+BUILDARCH := $(shell dpkg-architecture -qDEB_BUILD_ARCH)
+ifeq ($(BITARCH),amd64)
+    EXCLUDEBWA=""
+else
+    EXCLUDEBWA="BWA_tool"
+endif
+
 %:
 	dh $@ --with python2,python3 --buildsystem=pybuild
 
@@ -19,6 +26,7 @@
 	# 1. avoid some tests which need online access
 	# 2. avoid PAML_tools and EmbossPhylipNew since paml resp. embassy-phylip are non-free
 	# 3. avoid testing tools that are not packaged for Debian yet
+	# 4. avoid amd64 only tools on other architectures
         # While 2. and 3. do not create errors there is no point in bloating
 	# the build log and this kind of documentation makes things more transparent
 	mkdir -p Tests_avoid
@@ -26,6 +34,7 @@
 			Entrez_online HotRand NCBI_qblast SCOP_online SeqIO_online TogoWS \
 			PAML_tools EmbossPhylipNew \
 			MSAProbs_tool NACCESS_tool PopGen_DFDist PopGen_FDist PopGen_GenePop PopGen_GenePop_EasyController PopGen_SimCoal XXmotif_tool \
+			$(EXCLUDEBWA) \
 		    ; do \
 	    mv Tests/test_$${avoid}.py Tests_avoid ; \
 	done