[med-svn] [tophat] branch upstream updated (2770873 -> 8d67a5c)
Andreas Tille
tille at debian.org
Wed Mar 19 10:56:45 UTC 2014
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch upstream
in repository tophat.
from 2770873 Imported Upstream version 2.0.11
new 8d67a5c Imported Upstream version 2.0.11+dfsg
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
src/SeqAn-1.3/COPYING | 674 ----
src/SeqAn-1.3/README | 22 -
src/SeqAn-1.3/seqan.h | 61 -
src/SeqAn-1.3/seqan/LICENSE | 26 -
src/SeqAn-1.3/seqan/align.h | 79 -
src/SeqAn-1.3/seqan/align/align_algorithms.h | 261 --
src/SeqAn-1.3/seqan/align/align_base.h | 656 ----
src/SeqAn-1.3/seqan/align/align_cols_base.h | 443 ---
src/SeqAn-1.3/seqan/align/align_dynprog.h | 578 ----
.../seqan/align/align_generated_forwards.h | 1158 -------
src/SeqAn-1.3/seqan/align/align_hirschberg.h | 507 ---
src/SeqAn-1.3/seqan/align/align_iterator_base.h | 556 ----
src/SeqAn-1.3/seqan/align/align_local_dynprog.h | 881 -----
.../seqan/align/align_local_dynprog_banded.h | 585 ----
src/SeqAn-1.3/seqan/align/align_myers.h | 1041 ------
src/SeqAn-1.3/seqan/align/align_trace.h | 424 ---
src/SeqAn-1.3/seqan/align/gaps_array.h | 1184 -------
src/SeqAn-1.3/seqan/align/gaps_base.h | 1335 --------
src/SeqAn-1.3/seqan/align/gaps_iterator_base.h | 323 --
src/SeqAn-1.3/seqan/align/gaps_sumlist.h | 938 ------
src/SeqAn-1.3/seqan/align/hirschberg_set.h | 223 --
src/SeqAn-1.3/seqan/align/matrix_base.h | 1106 -------
src/SeqAn-1.3/seqan/basic.h | 142 -
src/SeqAn-1.3/seqan/basic/basic_aggregates.h | 732 -----
.../seqan/basic/basic_allocator_chunkpool.h | 335 --
.../seqan/basic/basic_allocator_interface.h | 307 --
.../seqan/basic/basic_allocator_multipool.h | 243 --
src/SeqAn-1.3/seqan/basic/basic_allocator_simple.h | 224 --
.../seqan/basic/basic_allocator_singlepool.h | 312 --
src/SeqAn-1.3/seqan/basic/basic_allocator_to_std.h | 190 --
.../seqan/basic/basic_alphabet_interface.h | 1104 -------
.../seqan/basic/basic_alphabet_interface2.h | 246 --
src/SeqAn-1.3/seqan/basic/basic_alphabet_simple.h | 2357 -------------
.../seqan/basic/basic_alphabet_simple_tabs.h | 595 ----
.../seqan/basic/basic_alphabet_trait_basic.h | 772 -----
src/SeqAn-1.3/seqan/basic/basic_compare.h | 74 -
src/SeqAn-1.3/seqan/basic/basic_converter.h | 128 -
src/SeqAn-1.3/seqan/basic/basic_counted_ptr.h | 128 -
src/SeqAn-1.3/seqan/basic/basic_debug.h | 427 ---
src/SeqAn-1.3/seqan/basic/basic_definition.h | 429 ---
src/SeqAn-1.3/seqan/basic/basic_forwards.h | 81 -
.../seqan/basic/basic_generated_forwards.h | 2403 --------------
src/SeqAn-1.3/seqan/basic/basic_holder.h | 1638 ----------
src/SeqAn-1.3/seqan/basic/basic_holder_dynamic.h | 210 --
src/SeqAn-1.3/seqan/basic/basic_host.h | 183 --
src/SeqAn-1.3/seqan/basic/basic_iterator.h | 805 -----
.../seqan/basic/basic_iterator_adapt_std.h | 449 ---
src/SeqAn-1.3/seqan/basic/basic_iterator_adaptor.h | 587 ----
src/SeqAn-1.3/seqan/basic/basic_iterator_base.h | 349 --
.../seqan/basic/basic_iterator_position.h | 479 ---
src/SeqAn-1.3/seqan/basic/basic_iterator_simple.h | 130 -
src/SeqAn-1.3/seqan/basic/basic_logvalue.h | 330 --
src/SeqAn-1.3/seqan/basic/basic_metaprogramming.h | 361 --
src/SeqAn-1.3/seqan/basic/basic_operator.h | 44 -
src/SeqAn-1.3/seqan/basic/basic_parallelism.h | 64 -
src/SeqAn-1.3/seqan/basic/basic_pointer.h | 115 -
src/SeqAn-1.3/seqan/basic/basic_profchar.h | 213 --
src/SeqAn-1.3/seqan/basic/basic_profile.h | 552 ----
src/SeqAn-1.3/seqan/basic/basic_proxy.h | 632 ----
src/SeqAn-1.3/seqan/basic/basic_sse2.h | 506 ---
src/SeqAn-1.3/seqan/basic/basic_tag.h | 251 --
src/SeqAn-1.3/seqan/basic/basic_testing.h | 1687 ----------
src/SeqAn-1.3/seqan/basic/basic_transport.h | 209 --
src/SeqAn-1.3/seqan/basic/basic_type.h | 710 ----
src/SeqAn-1.3/seqan/basic/basic_volatile_ptr.h | 171 -
src/SeqAn-1.3/seqan/blast.h | 72 -
src/SeqAn-1.3/seqan/blast/blast_base.h | 197 --
.../seqan/blast/blast_generated_forwards.h | 807 -----
src/SeqAn-1.3/seqan/blast/blast_hit.h | 306 --
src/SeqAn-1.3/seqan/blast/blast_hit_iterator.h | 441 ---
src/SeqAn-1.3/seqan/blast/blast_hsp.h | 1696 ----------
src/SeqAn-1.3/seqan/blast/blast_hsp_iterator.h | 310 --
src/SeqAn-1.3/seqan/blast/blast_iterator.h | 69 -
src/SeqAn-1.3/seqan/blast/blast_parsing.h | 137 -
src/SeqAn-1.3/seqan/blast/blast_report.h | 1170 -------
src/SeqAn-1.3/seqan/blast/blast_run.h | 418 ---
src/SeqAn-1.3/seqan/blast/blast_stream_hit.h | 135 -
.../seqan/blast/blast_stream_hit_iterator.h | 453 ---
.../seqan/blast/blast_stream_hsp_iterator.h | 435 ---
src/SeqAn-1.3/seqan/blast/blast_stream_report.h | 241 --
src/SeqAn-1.3/seqan/chaining.h | 75 -
src/SeqAn-1.3/seqan/chaining/chain_base.h | 371 ---
src/SeqAn-1.3/seqan/chaining/chain_generic.h | 260 --
src/SeqAn-1.3/seqan/chaining/chain_meta_fragment.h | 204 --
src/SeqAn-1.3/seqan/chaining/chain_point.h | 497 ---
src/SeqAn-1.3/seqan/chaining/chain_wrapper_point.h | 241 --
.../seqan/chaining/chaining_generated_forwards.h | 1515 ---------
src/SeqAn-1.3/seqan/chaining/fragment.h | 402 ---
src/SeqAn-1.3/seqan/chaining/geom_distribution.h | 75 -
src/SeqAn-1.3/seqan/chaining/range_max_tree.h | 52 -
src/SeqAn-1.3/seqan/chaining/range_tree.h | 58 -
src/SeqAn-1.3/seqan/chaining/rmt_base.h | 310 --
src/SeqAn-1.3/seqan/chaining/rmt_common_algos.h | 329 --
src/SeqAn-1.3/seqan/chaining/rmt_compl_algos.h | 282 --
src/SeqAn-1.3/seqan/chaining/rmt_def_algos.h | 119 -
.../seqan/chaining/rmt_skip_base_element.h | 59 -
src/SeqAn-1.3/seqan/chaining/rmt_skip_element.h | 126 -
src/SeqAn-1.3/seqan/chaining/rt_base.h | 345 --
src/SeqAn-1.3/seqan/chaining/rt_common_algos.h | 212 --
src/SeqAn-1.3/seqan/chaining/rt_impl.h | 162 -
.../seqan/chaining/rt_skip_base_element.h | 72 -
src/SeqAn-1.3/seqan/chaining/rt_skip_element.h | 244 --
src/SeqAn-1.3/seqan/chaining/rt_sl_base.h | 368 ---
src/SeqAn-1.3/seqan/chaining/rt_sl_compl_algos.h | 164 -
src/SeqAn-1.3/seqan/chaining/rt_sl_def_algos.h | 144 -
src/SeqAn-1.3/seqan/chaining/rt_sl_impl.h | 243 --
src/SeqAn-1.3/seqan/chaining/score_chain.h | 54 -
src/SeqAn-1.3/seqan/chaining/score_chain_sop.h | 248 --
src/SeqAn-1.3/seqan/chaining/score_manhattan.h | 188 --
src/SeqAn-1.3/seqan/chaining/score_zero.h | 152 -
src/SeqAn-1.3/seqan/chaining/skip_base_element.h | 888 -----
src/SeqAn-1.3/seqan/chaining/skip_element.h | 457 ---
src/SeqAn-1.3/seqan/chaining/skip_list.h | 69 -
src/SeqAn-1.3/seqan/chaining/skip_list_base.h | 1016 ------
src/SeqAn-1.3/seqan/chaining/skip_list_dynamic.h | 468 ---
src/SeqAn-1.3/seqan/chaining/skip_list_impl.h | 701 ----
src/SeqAn-1.3/seqan/chaining/skip_list_iterator.h | 279 --
src/SeqAn-1.3/seqan/chaining/skip_list_type.h | 391 ---
src/SeqAn-1.3/seqan/chaining/skip_pool_alloc.h | 377 ---
src/SeqAn-1.3/seqan/chaining/tree_chain.h | 130 -
src/SeqAn-1.3/seqan/chaining/tree_chain_sop.h | 202 --
src/SeqAn-1.3/seqan/chaining/tree_chain_utils.h | 567 ----
src/SeqAn-1.3/seqan/consensus.h | 57 -
src/SeqAn-1.3/seqan/consensus/consensus_base.h | 1806 ----------
.../seqan/consensus/consensus_generated_forwards.h | 304 --
src/SeqAn-1.3/seqan/consensus/consensus_library.h | 580 ----
src/SeqAn-1.3/seqan/consensus/consensus_realign.h | 763 -----
src/SeqAn-1.3/seqan/consensus/consensus_score.h | 388 ---
src/SeqAn-1.3/seqan/file.h | 113 -
src/SeqAn-1.3/seqan/file/chunk_collector.h | 554 ----
src/SeqAn-1.3/seqan/file/cstream.h | 307 --
src/SeqAn-1.3/seqan/file/file_array.h | 439 ---
src/SeqAn-1.3/seqan/file/file_base.h | 759 -----
src/SeqAn-1.3/seqan/file/file_cstyle.h | 245 --
src/SeqAn-1.3/seqan/file/file_filereader.h | 954 ------
src/SeqAn-1.3/seqan/file/file_filereaderiterator.h | 157 -
src/SeqAn-1.3/seqan/file/file_format.h | 705 ----
src/SeqAn-1.3/seqan/file/file_format_cgviz.h | 240 --
src/SeqAn-1.3/seqan/file/file_format_embl.h | 639 ----
src/SeqAn-1.3/seqan/file/file_format_fasta.h | 587 ----
src/SeqAn-1.3/seqan/file/file_format_fasta_align.h | 339 --
src/SeqAn-1.3/seqan/file/file_format_genbank.h | 381 ---
src/SeqAn-1.3/seqan/file/file_format_guess.h | 116 -
src/SeqAn-1.3/seqan/file/file_format_mmap.h | 1372 --------
src/SeqAn-1.3/seqan/file/file_format_raw.h | 319 --
src/SeqAn-1.3/seqan/file/file_forwards.h | 56 -
src/SeqAn-1.3/seqan/file/file_generated_forwards.h | 1371 --------
src/SeqAn-1.3/seqan/file/file_page.h | 1093 -------
src/SeqAn-1.3/seqan/file/file_page_raid0.h | 209 --
src/SeqAn-1.3/seqan/file/meta.h | 48 -
src/SeqAn-1.3/seqan/file/stream.h | 446 ---
src/SeqAn-1.3/seqan/file/stream_algorithms.h | 221 --
src/SeqAn-1.3/seqan/file/string_external.h | 2081 ------------
src/SeqAn-1.3/seqan/file/string_mmap.h | 832 -----
src/SeqAn-1.3/seqan/find.h | 95 -
src/SeqAn-1.3/seqan/find/find_abndm.h | 639 ----
src/SeqAn-1.3/seqan/find/find_ahocorasick.h | 323 --
src/SeqAn-1.3/seqan/find/find_base.h | 885 -----
src/SeqAn-1.3/seqan/find/find_begin.h | 395 ---
src/SeqAn-1.3/seqan/find/find_bndm.h | 261 --
src/SeqAn-1.3/seqan/find/find_bom.h | 242 --
src/SeqAn-1.3/seqan/find/find_generated_forwards.h | 1062 ------
src/SeqAn-1.3/seqan/find/find_hamming_simple.h | 272 --
src/SeqAn-1.3/seqan/find/find_horspool.h | 476 ---
src/SeqAn-1.3/seqan/find/find_multi.h | 160 -
src/SeqAn-1.3/seqan/find/find_multiple_bfam.h | 401 ---
src/SeqAn-1.3/seqan/find/find_multiple_shiftand.h | 436 ---
src/SeqAn-1.3/seqan/find/find_myers_ukkonen.h | 1677 ----------
src/SeqAn-1.3/seqan/find/find_pattern_base.h | 398 ---
src/SeqAn-1.3/seqan/find/find_pex.h | 726 ----
src/SeqAn-1.3/seqan/find/find_score.h | 500 ---
src/SeqAn-1.3/seqan/find/find_set_horspool.h | 301 --
src/SeqAn-1.3/seqan/find/find_shiftand.h | 297 --
src/SeqAn-1.3/seqan/find/find_shiftor.h | 332 --
src/SeqAn-1.3/seqan/find/find_simple.h | 162 -
src/SeqAn-1.3/seqan/find/find_wild_shiftand.h | 689 ----
src/SeqAn-1.3/seqan/find/find_wumanber.h | 482 ---
src/SeqAn-1.3/seqan/find2.h | 79 -
.../seqan/find2/find2_generated_forwards.h | 477 ---
src/SeqAn-1.3/seqan/find2/find_approx_dpsearch.h | 603 ----
src/SeqAn-1.3/seqan/find2/find_approx_find_begin.h | 223 --
src/SeqAn-1.3/seqan/find2/find_base.h | 83 -
src/SeqAn-1.3/seqan/find2/find_exact_shiftand.h | 495 ---
src/SeqAn-1.3/seqan/find2/find_exact_simple.h | 346 --
src/SeqAn-1.3/seqan/find2/find_finder_default.h | 157 -
src/SeqAn-1.3/seqan/find2/find_hamming_simple.h | 384 ---
.../seqan/find2/find_multiple_exact_simple.h | 473 ---
.../seqan/find2/find_pattern_wild_shiftand.h | 874 -----
src/SeqAn-1.3/seqan/find_motif.h | 75 -
src/SeqAn-1.3/seqan/find_motif/em_algorithm.h | 870 -----
src/SeqAn-1.3/seqan/find_motif/find_motif_base.h | 366 ---
.../find_motif/find_motif_epatternbranching.h | 768 -----
.../find_motif/find_motif_generated_forwards.h | 472 ---
src/SeqAn-1.3/seqan/find_motif/find_motif_pms1.h | 822 -----
src/SeqAn-1.3/seqan/find_motif/find_motif_pmsp.h | 792 -----
.../seqan/find_motif/find_motif_projection.h | 1256 -------
.../seqan/find_motif/frequency_distribution.h | 641 ----
src/SeqAn-1.3/seqan/find_motif/profile.h | 242 --
src/SeqAn-1.3/seqan/find_motif/pseudocount_base.h | 80 -
.../seqan/find_motif/pseudocount_mode_c.h | 165 -
.../seqan/find_motif/pseudocount_mode_p.h | 165 -
.../seqan/find_motif/sequence_model_types.h | 136 -
src/SeqAn-1.3/seqan/graph_algorithms.h | 55 -
.../seqan/graph_algorithms/graph_algorithm.h | 1991 -----------
.../graph_algorithms/graph_algorithm_heap_tree.h | 514 ---
.../seqan/graph_algorithms/graph_algorithm_hmm.h | 1162 -------
.../graph_algorithms/graph_algorithm_lis_his.h | 405 ---
.../graph_algorithms_generated_forwards.h | 424 ---
src/SeqAn-1.3/seqan/graph_align.h | 59 -
.../seqan/graph_align/graph_align_banded_gotoh.h | 348 --
.../graph_align_banded_needleman_wunsch.h | 508 ---
.../graph_align_banded_smith_waterman_clump.h | 356 --
src/SeqAn-1.3/seqan/graph_align/graph_align_base.h | 280 --
.../seqan/graph_align/graph_align_config.h | 571 ----
.../graph_align/graph_align_generated_forwards.h | 327 --
.../seqan/graph_align/graph_align_gotoh.h | 327 --
.../seqan/graph_align/graph_align_hirschberg.h | 529 ---
.../seqan/graph_align/graph_align_interface.h | 454 ---
.../graph_align/graph_align_needleman_wunsch.h | 288 --
.../seqan/graph_align/graph_align_smith_waterman.h | 388 ---
.../graph_align/graph_align_smith_waterman_clump.h | 125 -
src/SeqAn-1.3/seqan/graph_msa.h | 59 -
.../seqan/graph_msa/graph_align_tcoffee_base.h | 1050 ------
.../seqan/graph_msa/graph_align_tcoffee_distance.h | 222 --
.../graph_msa/graph_align_tcoffee_guidetree.h | 882 -----
.../seqan/graph_msa/graph_align_tcoffee_io.h | 1042 ------
.../seqan/graph_msa/graph_align_tcoffee_kmer.h | 153 -
.../seqan/graph_msa/graph_align_tcoffee_library.h | 544 ---
.../seqan/graph_msa/graph_align_tcoffee_msa.h | 483 ---
.../graph_msa/graph_align_tcoffee_progressive.h | 489 ---
.../graph_msa/graph_align_tcoffee_refinement.h | 515 ---
.../seqan/graph_msa/graph_msa_generated_forwards.h | 541 ---
src/SeqAn-1.3/seqan/graph_types.h | 89 -
src/SeqAn-1.3/seqan/graph_types/graph_base.h | 285 --
src/SeqAn-1.3/seqan/graph_types/graph_drawing.h | 937 ------
src/SeqAn-1.3/seqan/graph_types/graph_edgestump.h | 1046 ------
src/SeqAn-1.3/seqan/graph_types/graph_idmanager.h | 480 ---
.../seqan/graph_types/graph_impl_automaton.h | 1008 ------
.../seqan/graph_types/graph_impl_directed.h | 1010 ------
.../seqan/graph_types/graph_impl_fragment.h | 452 ---
src/SeqAn-1.3/seqan/graph_types/graph_impl_hmm.h | 1051 ------
.../seqan/graph_types/graph_impl_oracle.h | 265 --
src/SeqAn-1.3/seqan/graph_types/graph_impl_tree.h | 1101 -------
src/SeqAn-1.3/seqan/graph_types/graph_impl_trie.h | 275 --
.../seqan/graph_types/graph_impl_undirected.h | 819 -----
.../seqan/graph_types/graph_impl_wordgraph.h | 287 --
src/SeqAn-1.3/seqan/graph_types/graph_interface.h | 465 ---
src/SeqAn-1.3/seqan/graph_types/graph_iterator.h | 97 -
.../seqan/graph_types/graph_iterator_adjacency.h | 346 --
.../seqan/graph_types/graph_iterator_bfs.h | 302 --
.../seqan/graph_types/graph_iterator_dfs.h | 305 --
.../seqan/graph_types/graph_iterator_edge.h | 481 ---
.../seqan/graph_types/graph_iterator_outedge.h | 1225 -------
.../seqan/graph_types/graph_iterator_vertex.h | 473 ---
src/SeqAn-1.3/seqan/graph_types/graph_property.h | 759 -----
.../graph_types/graph_types_generated_forwards.h | 1374 --------
.../seqan/graph_types/graph_utility_parsing.h | 90 -
src/SeqAn-1.3/seqan/index.h | 162 -
src/SeqAn-1.3/seqan/index/find_index.h | 312 --
src/SeqAn-1.3/seqan/index/find_index_approx.h | 229 --
src/SeqAn-1.3/seqan/index/find_index_esa.h | 1944 -----------
src/SeqAn-1.3/seqan/index/find_index_qgram.h | 97 -
src/SeqAn-1.3/seqan/index/find_quasar.h | 167 -
src/SeqAn-1.3/seqan/index/find_swift.h | 1956 -----------
src/SeqAn-1.3/seqan/index/index_base.h | 1181 -------
src/SeqAn-1.3/seqan/index/index_bwt.h | 313 --
src/SeqAn-1.3/seqan/index/index_childtab.h | 328 --
src/SeqAn-1.3/seqan/index/index_dfi.h | 599 ----
src/SeqAn-1.3/seqan/index/index_esa_algs.h | 1010 ------
src/SeqAn-1.3/seqan/index/index_esa_algs_multi.h | 720 ----
src/SeqAn-1.3/seqan/index/index_esa_base.h | 434 ---
src/SeqAn-1.3/seqan/index/index_esa_drawing.h | 108 -
src/SeqAn-1.3/seqan/index/index_esa_stree.h | 2288 -------------
.../seqan/index/index_generated_forwards.h | 3450 --------------------
src/SeqAn-1.3/seqan/index/index_lcp.h | 531 ---
src/SeqAn-1.3/seqan/index/index_lcp_tree.h | 178 -
src/SeqAn-1.3/seqan/index/index_manual_forwards.h | 69 -
src/SeqAn-1.3/seqan/index/index_pizzachili.h | 384 ---
src/SeqAn-1.3/seqan/index/index_pizzachili_find.h | 174 -
.../seqan/index/index_pizzachili_string.h | 803 -----
src/SeqAn-1.3/seqan/index/index_qgram.h | 2416 --------------
.../seqan/index/index_qgram_openaddressing.h | 341 --
src/SeqAn-1.3/seqan/index/index_sa_btree.h | 133 -
src/SeqAn-1.3/seqan/index/index_sa_bwtwalk.h | 660 ----
src/SeqAn-1.3/seqan/index/index_sa_lss.h | 451 ---
src/SeqAn-1.3/seqan/index/index_sa_mm.h | 201 --
src/SeqAn-1.3/seqan/index/index_sa_qsort.h | 241 --
src/SeqAn-1.3/seqan/index/index_shawarma.h | 93 -
src/SeqAn-1.3/seqan/index/index_shims.h | 872 -----
src/SeqAn-1.3/seqan/index/index_skew3.h | 544 ---
src/SeqAn-1.3/seqan/index/index_skew7.h | 853 -----
src/SeqAn-1.3/seqan/index/index_skew7_multi.h | 424 ---
src/SeqAn-1.3/seqan/index/index_wotd.h | 1994 -----------
src/SeqAn-1.3/seqan/index/pipe_merger3.h | 167 -
src/SeqAn-1.3/seqan/index/pipe_merger7.h | 520 ---
src/SeqAn-1.3/seqan/index/pizzachili_api.h | 182 --
src/SeqAn-1.3/seqan/index/pump_extender3.h | 136 -
src/SeqAn-1.3/seqan/index/pump_extender7.h | 514 ---
src/SeqAn-1.3/seqan/index/pump_lcp_core.h | 391 ---
src/SeqAn-1.3/seqan/index/pump_separator7.h | 85 -
src/SeqAn-1.3/seqan/index/radix.h | 195 --
src/SeqAn-1.3/seqan/index/repeat_base.h | 325 --
src/SeqAn-1.3/seqan/index/shape_base.h | 750 -----
src/SeqAn-1.3/seqan/index/shape_gapped.h | 661 ----
src/SeqAn-1.3/seqan/index/shape_onegapped.h | 376 ---
src/SeqAn-1.3/seqan/index/shape_predefined.h | 128 -
src/SeqAn-1.3/seqan/index/shape_threshold.h | 1124 -------
src/SeqAn-1.3/seqan/map.h | 68 -
src/SeqAn-1.3/seqan/map/map_adapter_stl.h | 753 -----
src/SeqAn-1.3/seqan/map/map_base.h | 253 --
src/SeqAn-1.3/seqan/map/map_chooser.h | 66 -
src/SeqAn-1.3/seqan/map/map_generated_forwards.h | 581 ----
src/SeqAn-1.3/seqan/map/map_skiplist.h | 1163 -------
src/SeqAn-1.3/seqan/map/map_vector.h | 512 ---
src/SeqAn-1.3/seqan/map/sumlist.h | 214 --
src/SeqAn-1.3/seqan/map/sumlist_mini.h | 976 ------
src/SeqAn-1.3/seqan/map/sumlist_skip.h | 1124 -------
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