[med-svn] [jellyfish] 02/06: Imported Upstream version 1.1.11
Andreas Tille
tille at debian.org
Fri Mar 21 10:59:02 UTC 2014
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository jellyfish.
commit e7fb2642aa48d4c5c9d549b6c0eaf60a3ce2b559
Author: Andreas Tille <tille at debian.org>
Date: Fri Mar 21 11:32:22 2014 +0100
Imported Upstream version 1.1.11
---
aclocal.m4 | 4 +-
config.h.in | 3 +
config.sub | 11 +-
configure | 599 +++++++++++++++++++++++---------------
configure.ac | 15 +-
jellyfish/cite.cc | 3 +-
jellyfish/concurrent_queues.hpp | 1 -
jellyfish/dbg.cc | 7 +
jellyfish/dumper.hpp | 25 +-
jellyfish/err.hpp | 31 +-
jellyfish/file_parser.cc | 2 +-
jellyfish/square_binary_matrix.cc | 11 +-
ltmain.sh | 32 +-
m4/libtool.m4 | 61 ++--
tests/compat.sh.in | 2 +-
15 files changed, 477 insertions(+), 330 deletions(-)
diff --git a/aclocal.m4 b/aclocal.m4
index 11af315..20ca7c9 100644
--- a/aclocal.m4
+++ b/aclocal.m4
@@ -14,8 +14,8 @@
m4_ifndef([AC_AUTOCONF_VERSION],
[m4_copy([m4_PACKAGE_VERSION], [AC_AUTOCONF_VERSION])])dnl
-m4_if(m4_defn([AC_AUTOCONF_VERSION]), [2.69],,
-[m4_warning([this file was generated for autoconf 2.69.
+m4_if(m4_defn([AC_AUTOCONF_VERSION]), [2.68],,
+[m4_warning([this file was generated for autoconf 2.68.
You have another version of autoconf. It may work, but is not guaranteed to.
If you have problems, you may need to regenerate the build system entirely.
To do so, use the procedure documented by the package, typically `autoreconf'.])])
diff --git a/config.h.in b/config.h.in
index 7c5c375..7801220 100644
--- a/config.h.in
+++ b/config.h.in
@@ -46,6 +46,9 @@
/* Define to 1 if you have the <sys/stat.h> header file. */
#undef HAVE_SYS_STAT_H
+/* Define to 1 if you have the <sys/syscall.h> header file. */
+#undef HAVE_SYS_SYSCALL_H
+
/* Define to 1 if you have the <sys/types.h> header file. */
#undef HAVE_SYS_TYPES_H
diff --git a/config.sub b/config.sub
index 6205f84..c894da4 100755
--- a/config.sub
+++ b/config.sub
@@ -4,7 +4,7 @@
# 2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010,
# 2011, 2012 Free Software Foundation, Inc.
-timestamp='2012-04-18'
+timestamp='2012-02-10'
# This file is (in principle) common to ALL GNU software.
# The presence of a machine in this file suggests that SOME GNU software
@@ -225,12 +225,6 @@ case $os in
-isc*)
basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
;;
- -lynx*178)
- os=-lynxos178
- ;;
- -lynx*5)
- os=-lynxos5
- ;;
-lynx*)
os=-lynxos
;;
@@ -1543,9 +1537,6 @@ case $basic_machine in
c4x-* | tic4x-*)
os=-coff
;;
- hexagon-*)
- os=-elf
- ;;
tic54x-*)
os=-coff
;;
diff --git a/configure b/configure
index c82ee84..dc385a3 100755
--- a/configure
+++ b/configure
@@ -1,11 +1,13 @@
#! /bin/sh
# Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.69 for jellyfish 1.1.10.
+# Generated by GNU Autoconf 2.68 for jellyfish 1.1.11.
#
# Report bugs to <gmarcais at umd.edu>.
#
#
-# Copyright (C) 1992-1996, 1998-2012 Free Software Foundation, Inc.
+# Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001,
+# 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010 Free Software
+# Foundation, Inc.
#
#
# This configure script is free software; the Free Software Foundation
@@ -134,31 +136,6 @@ export LANGUAGE
# CDPATH.
(unset CDPATH) >/dev/null 2>&1 && unset CDPATH
-# Use a proper internal environment variable to ensure we don't fall
- # into an infinite loop, continuously re-executing ourselves.
- if test x"${_as_can_reexec}" != xno && test "x$CONFIG_SHELL" != x; then
- _as_can_reexec=no; export _as_can_reexec;
- # We cannot yet assume a decent shell, so we have to provide a
-# neutralization value for shells without unset; and this also
-# works around shells that cannot unset nonexistent variables.
-# Preserve -v and -x to the replacement shell.
-BASH_ENV=/dev/null
-ENV=/dev/null
-(unset BASH_ENV) >/dev/null 2>&1 && unset BASH_ENV ENV
-case $- in # ((((
- *v*x* | *x*v* ) as_opts=-vx ;;
- *v* ) as_opts=-v ;;
- *x* ) as_opts=-x ;;
- * ) as_opts= ;;
-esac
-exec $CONFIG_SHELL $as_opts "$as_myself" ${1+"$@"}
-# Admittedly, this is quite paranoid, since all the known shells bail
-# out after a failed `exec'.
-$as_echo "$0: could not re-execute with $CONFIG_SHELL" >&2
-as_fn_exit 255
- fi
- # We don't want this to propagate to other subprocesses.
- { _as_can_reexec=; unset _as_can_reexec;}
if test "x$CONFIG_SHELL" = x; then
as_bourne_compatible="if test -n \"\${ZSH_VERSION+set}\" && (emulate sh) >/dev/null 2>&1; then :
emulate sh
@@ -192,8 +169,7 @@ if ( set x; as_fn_ret_success y && test x = \"\$1\" ); then :
else
exitcode=1; echo positional parameters were not saved.
fi
-test x\$exitcode = x0 || exit 1
-test -x / || exit 1"
+test x\$exitcode = x0 || exit 1"
as_suggested=" as_lineno_1=";as_suggested=$as_suggested$LINENO;as_suggested=$as_suggested" as_lineno_1a=\$LINENO
as_lineno_2=";as_suggested=$as_suggested$LINENO;as_suggested=$as_suggested" as_lineno_2a=\$LINENO
eval 'test \"x\$as_lineno_1'\$as_run'\" != \"x\$as_lineno_2'\$as_run'\" &&
@@ -246,25 +222,21 @@ IFS=$as_save_IFS
if test "x$CONFIG_SHELL" != x; then :
- export CONFIG_SHELL
- # We cannot yet assume a decent shell, so we have to provide a
-# neutralization value for shells without unset; and this also
-# works around shells that cannot unset nonexistent variables.
-# Preserve -v and -x to the replacement shell.
-BASH_ENV=/dev/null
-ENV=/dev/null
-(unset BASH_ENV) >/dev/null 2>&1 && unset BASH_ENV ENV
-case $- in # ((((
- *v*x* | *x*v* ) as_opts=-vx ;;
- *v* ) as_opts=-v ;;
- *x* ) as_opts=-x ;;
- * ) as_opts= ;;
-esac
-exec $CONFIG_SHELL $as_opts "$as_myself" ${1+"$@"}
-# Admittedly, this is quite paranoid, since all the known shells bail
-# out after a failed `exec'.
-$as_echo "$0: could not re-execute with $CONFIG_SHELL" >&2
-exit 255
+ # We cannot yet assume a decent shell, so we have to provide a
+ # neutralization value for shells without unset; and this also
+ # works around shells that cannot unset nonexistent variables.
+ # Preserve -v and -x to the replacement shell.
+ BASH_ENV=/dev/null
+ ENV=/dev/null
+ (unset BASH_ENV) >/dev/null 2>&1 && unset BASH_ENV ENV
+ export CONFIG_SHELL
+ case $- in # ((((
+ *v*x* | *x*v* ) as_opts=-vx ;;
+ *v* ) as_opts=-v ;;
+ *x* ) as_opts=-x ;;
+ * ) as_opts= ;;
+ esac
+ exec "$CONFIG_SHELL" $as_opts "$as_myself" ${1+"$@"}
fi
if test x$as_have_required = xno; then :
@@ -367,14 +339,6 @@ $as_echo X"$as_dir" |
} # as_fn_mkdir_p
-
-# as_fn_executable_p FILE
-# -----------------------
-# Test if FILE is an executable regular file.
-as_fn_executable_p ()
-{
- test -f "$1" && test -x "$1"
-} # as_fn_executable_p
# as_fn_append VAR VALUE
# ----------------------
# Append the text in VALUE to the end of the definition contained in VAR. Take
@@ -496,10 +460,6 @@ as_cr_alnum=$as_cr_Letters$as_cr_digits
chmod +x "$as_me.lineno" ||
{ $as_echo "$as_me: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&2; as_fn_exit 1; }
- # If we had to re-execute with $CONFIG_SHELL, we're ensured to have
- # already done that, so ensure we don't try to do so again and fall
- # in an infinite loop. This has already happened in practice.
- _as_can_reexec=no; export _as_can_reexec
# Don't try to exec as it changes $[0], causing all sort of problems
# (the dirname of $[0] is not the place where we might find the
# original and so on. Autoconf is especially sensitive to this).
@@ -534,16 +494,16 @@ if (echo >conf$$.file) 2>/dev/null; then
# ... but there are two gotchas:
# 1) On MSYS, both `ln -s file dir' and `ln file dir' fail.
# 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable.
- # In both cases, we have to default to `cp -pR'.
+ # In both cases, we have to default to `cp -p'.
ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe ||
- as_ln_s='cp -pR'
+ as_ln_s='cp -p'
elif ln conf$$.file conf$$ 2>/dev/null; then
as_ln_s=ln
else
- as_ln_s='cp -pR'
+ as_ln_s='cp -p'
fi
else
- as_ln_s='cp -pR'
+ as_ln_s='cp -p'
fi
rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
rmdir conf$$.dir 2>/dev/null
@@ -555,8 +515,28 @@ else
as_mkdir_p=false
fi
-as_test_x='test -x'
-as_executable_p=as_fn_executable_p
+if test -x / >/dev/null 2>&1; then
+ as_test_x='test -x'
+else
+ if ls -dL / >/dev/null 2>&1; then
+ as_ls_L_option=L
+ else
+ as_ls_L_option=
+ fi
+ as_test_x='
+ eval sh -c '\''
+ if test -d "$1"; then
+ test -d "$1/.";
+ else
+ case $1 in #(
+ -*)set "./$1";;
+ esac;
+ case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in #((
+ ???[sx]*):;;*)false;;esac;fi
+ '\'' sh
+ '
+fi
+as_executable_p=$as_test_x
# Sed expression to map a string onto a valid CPP name.
as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
@@ -590,11 +570,12 @@ MAKEFLAGS=
# Identity of this package.
PACKAGE_NAME='jellyfish'
PACKAGE_TARNAME='jellyfish'
-PACKAGE_VERSION='1.1.10'
-PACKAGE_STRING='jellyfish 1.1.10'
+PACKAGE_VERSION='1.1.11'
+PACKAGE_STRING='jellyfish 1.1.11'
PACKAGE_BUGREPORT='gmarcais at umd.edu'
PACKAGE_URL=''
+ac_unique_file="jellyfish"
# Factoring default headers for most tests.
ac_includes_default="\
#include <stdio.h>
@@ -1241,6 +1222,8 @@ target=$target_alias
if test "x$host_alias" != x; then
if test "x$build_alias" = x; then
cross_compiling=maybe
+ $as_echo "$as_me: WARNING: if you wanted to set the --build type, don't use --host.
+ If a cross compiler is detected then cross compile mode will be used" >&2
elif test "x$build_alias" != "x$host_alias"; then
cross_compiling=yes
fi
@@ -1326,7 +1309,7 @@ if test "$ac_init_help" = "long"; then
# Omit some internal or obsolete options to make the list less imposing.
# This message is too long to be a string in the A/UX 3.1 sh.
cat <<_ACEOF
-\`configure' configures jellyfish 1.1.10 to adapt to many kinds of systems.
+\`configure' configures jellyfish 1.1.11 to adapt to many kinds of systems.
Usage: $0 [OPTION]... [VAR=VALUE]...
@@ -1396,7 +1379,7 @@ fi
if test -n "$ac_init_help"; then
case $ac_init_help in
- short | recursive ) echo "Configuration of jellyfish 1.1.10:";;
+ short | recursive ) echo "Configuration of jellyfish 1.1.11:";;
esac
cat <<\_ACEOF
@@ -1506,10 +1489,10 @@ fi
test -n "$ac_init_help" && exit $ac_status
if $ac_init_version; then
cat <<\_ACEOF
-jellyfish configure 1.1.10
-generated by GNU Autoconf 2.69
+jellyfish configure 1.1.11
+generated by GNU Autoconf 2.68
-Copyright (C) 2012 Free Software Foundation, Inc.
+Copyright (C) 2010 Free Software Foundation, Inc.
This configure script is free software; the Free Software Foundation
gives unlimited permission to copy, distribute and modify it.
_ACEOF
@@ -1585,7 +1568,7 @@ $as_echo "$ac_try_echo"; } >&5
test ! -s conftest.err
} && test -s conftest$ac_exeext && {
test "$cross_compiling" = yes ||
- test -x conftest$ac_exeext
+ $as_test_x conftest$ac_exeext
}; then :
ac_retval=0
else
@@ -1883,7 +1866,7 @@ $as_echo "$ac_try_echo"; } >&5
test ! -s conftest.err
} && test -s conftest$ac_exeext && {
test "$cross_compiling" = yes ||
- test -x conftest$ac_exeext
+ $as_test_x conftest$ac_exeext
}; then :
ac_retval=0
else
@@ -1902,11 +1885,11 @@ fi
} # ac_fn_cxx_try_link
-# ac_fn_c_check_type LINENO TYPE VAR INCLUDES
-# -------------------------------------------
+# ac_fn_cxx_check_type LINENO TYPE VAR INCLUDES
+# ---------------------------------------------
# Tests whether TYPE exists after having included INCLUDES, setting cache
# variable VAR accordingly.
-ac_fn_c_check_type ()
+ac_fn_cxx_check_type ()
{
as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $2" >&5
@@ -1927,7 +1910,7 @@ if (sizeof ($2))
return 0;
}
_ACEOF
-if ac_fn_c_try_compile "$LINENO"; then :
+if ac_fn_cxx_try_compile "$LINENO"; then :
cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
$4
@@ -1940,7 +1923,7 @@ if (sizeof (($2)))
return 0;
}
_ACEOF
-if ac_fn_c_try_compile "$LINENO"; then :
+if ac_fn_cxx_try_compile "$LINENO"; then :
else
eval "$3=yes"
@@ -1954,13 +1937,13 @@ eval ac_res=\$$3
$as_echo "$ac_res" >&6; }
eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno
-} # ac_fn_c_check_type
+} # ac_fn_cxx_check_type
-# ac_fn_c_check_decl LINENO SYMBOL VAR INCLUDES
-# ---------------------------------------------
+# ac_fn_cxx_check_decl LINENO SYMBOL VAR INCLUDES
+# -----------------------------------------------
# Tests whether SYMBOL is declared in INCLUDES, setting cache variable VAR
# accordingly.
-ac_fn_c_check_decl ()
+ac_fn_cxx_check_decl ()
{
as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
as_decl_name=`echo $2|sed 's/ *(.*//'`
@@ -1988,7 +1971,7 @@ main ()
return 0;
}
_ACEOF
-if ac_fn_c_try_compile "$LINENO"; then :
+if ac_fn_cxx_try_compile "$LINENO"; then :
eval "$3=yes"
else
eval "$3=no"
@@ -2000,14 +1983,123 @@ eval ac_res=\$$3
$as_echo "$ac_res" >&6; }
eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno
-} # ac_fn_c_check_decl
+} # ac_fn_cxx_check_decl
-# ac_fn_c_check_header_mongrel LINENO HEADER VAR INCLUDES
-# -------------------------------------------------------
+# ac_fn_cxx_check_func LINENO FUNC VAR
+# ------------------------------------
+# Tests whether FUNC exists, setting the cache variable VAR accordingly
+ac_fn_cxx_check_func ()
+{
+ as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $2" >&5
+$as_echo_n "checking for $2... " >&6; }
+if eval \${$3+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+/* Define $2 to an innocuous variant, in case <limits.h> declares $2.
+ For example, HP-UX 11i <limits.h> declares gettimeofday. */
+#define $2 innocuous_$2
+
+/* System header to define __stub macros and hopefully few prototypes,
+ which can conflict with char $2 (); below.
+ Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
+ <limits.h> exists even on freestanding compilers. */
+
+#ifdef __STDC__
+# include <limits.h>
+#else
+# include <assert.h>
+#endif
+
+#undef $2
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char $2 ();
+/* The GNU C library defines this for functions which it implements
+ to always fail with ENOSYS. Some functions are actually named
+ something starting with __ and the normal name is an alias. */
+#if defined __stub_$2 || defined __stub___$2
+choke me
+#endif
+
+int
+main ()
+{
+return $2 ();
+ ;
+ return 0;
+}
+_ACEOF
+if ac_fn_cxx_try_link "$LINENO"; then :
+ eval "$3=yes"
+else
+ eval "$3=no"
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+fi
+eval ac_res=\$$3
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+ eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno
+
+} # ac_fn_cxx_check_func
+
+# ac_fn_cxx_try_run LINENO
+# ------------------------
+# Try to link conftest.$ac_ext, and return whether this succeeded. Assumes
+# that executables *can* be run.
+ac_fn_cxx_try_run ()
+{
+ as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
+ if { { ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
+$as_echo "$ac_try_echo"; } >&5
+ (eval "$ac_link") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+ test $ac_status = 0; } && { ac_try='./conftest$ac_exeext'
+ { { case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
+$as_echo "$ac_try_echo"; } >&5
+ (eval "$ac_try") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+ test $ac_status = 0; }; }; then :
+ ac_retval=0
+else
+ $as_echo "$as_me: program exited with status $ac_status" >&5
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_retval=$ac_status
+fi
+ rm -rf conftest.dSYM conftest_ipa8_conftest.oo
+ eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno
+ as_fn_set_status $ac_retval
+
+} # ac_fn_cxx_try_run
+
+# ac_fn_cxx_check_header_mongrel LINENO HEADER VAR INCLUDES
+# ---------------------------------------------------------
# Tests whether HEADER exists, giving a warning if it cannot be compiled using
# the include files in INCLUDES and setting the cache variable VAR
# accordingly.
-ac_fn_c_check_header_mongrel ()
+ac_fn_cxx_check_header_mongrel ()
{
as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
if eval \${$3+:} false; then :
@@ -2028,7 +2120,7 @@ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
$4
#include <$2>
_ACEOF
-if ac_fn_c_try_compile "$LINENO"; then :
+if ac_fn_cxx_try_compile "$LINENO"; then :
ac_header_compiler=yes
else
ac_header_compiler=no
@@ -2044,7 +2136,7 @@ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
#include <$2>
_ACEOF
-if ac_fn_c_try_cpp "$LINENO"; then :
+if ac_fn_cxx_try_cpp "$LINENO"; then :
ac_header_preproc=yes
else
ac_header_preproc=no
@@ -2054,7 +2146,7 @@ rm -f conftest.err conftest.i conftest.$ac_ext
$as_echo "$ac_header_preproc" >&6; }
# So? What about this header?
-case $ac_header_compiler:$ac_header_preproc:$ac_c_preproc_warn_flag in #((
+case $ac_header_compiler:$ac_header_preproc:$ac_cxx_preproc_warn_flag in #((
yes:no: )
{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: $2: accepted by the compiler, rejected by the preprocessor!" >&5
$as_echo "$as_me: WARNING: $2: accepted by the compiler, rejected by the preprocessor!" >&2;}
@@ -2091,13 +2183,13 @@ $as_echo "$ac_res" >&6; }
fi
eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno
-} # ac_fn_c_check_header_mongrel
+} # ac_fn_cxx_check_header_mongrel
-# ac_fn_c_check_member LINENO AGGR MEMBER VAR INCLUDES
-# ----------------------------------------------------
+# ac_fn_cxx_check_member LINENO AGGR MEMBER VAR INCLUDES
+# ------------------------------------------------------
# Tries to find if the field MEMBER exists in type AGGR, after including
# INCLUDES, setting cache variable VAR accordingly.
-ac_fn_c_check_member ()
+ac_fn_cxx_check_member ()
{
as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $2.$3" >&5
@@ -2118,7 +2210,7 @@ return 0;
return 0;
}
_ACEOF
-if ac_fn_c_try_compile "$LINENO"; then :
+if ac_fn_cxx_try_compile "$LINENO"; then :
eval "$4=yes"
else
cat confdefs.h - <<_ACEOF >conftest.$ac_ext
@@ -2134,7 +2226,7 @@ return 0;
return 0;
}
_ACEOF
-if ac_fn_c_try_compile "$LINENO"; then :
+if ac_fn_cxx_try_compile "$LINENO"; then :
eval "$4=yes"
else
eval "$4=no"
@@ -2148,13 +2240,13 @@ eval ac_res=\$$4
$as_echo "$ac_res" >&6; }
eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno
-} # ac_fn_c_check_member
+} # ac_fn_cxx_check_member
cat >config.log <<_ACEOF
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
-It was created by jellyfish $as_me 1.1.10, which was
-generated by GNU Autoconf 2.69. Invocation command line was
+It was created by jellyfish $as_me 1.1.11, which was
+generated by GNU Autoconf 2.68. Invocation command line was
$ $0 $@
@@ -2641,7 +2733,7 @@ case $as_dir/ in #((
# by default.
for ac_prog in ginstall scoinst install; do
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_prog$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_prog$ac_exec_ext" && $as_test_x "$as_dir/$ac_prog$ac_exec_ext"; }; then
if test $ac_prog = install &&
grep dspmsg "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then
# AIX install. It has an incompatible calling convention.
@@ -2810,7 +2902,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_STRIP="${ac_tool_prefix}strip"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -2850,7 +2942,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_ac_ct_STRIP="strip"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -2901,7 +2993,7 @@ do
test -z "$as_dir" && as_dir=.
for ac_prog in mkdir gmkdir; do
for ac_exec_ext in '' $ac_executable_extensions; do
- as_fn_executable_p "$as_dir/$ac_prog$ac_exec_ext" || continue
+ { test -f "$as_dir/$ac_prog$ac_exec_ext" && $as_test_x "$as_dir/$ac_prog$ac_exec_ext"; } || continue
case `"$as_dir/$ac_prog$ac_exec_ext" --version 2>&1` in #(
'mkdir (GNU coreutils) '* | \
'mkdir (coreutils) '* | \
@@ -2954,7 +3046,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_AWK="$ac_prog"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -3040,7 +3132,7 @@ fi
# Define the identity of the package.
PACKAGE='jellyfish'
- VERSION='1.1.10'
+ VERSION='1.1.11'
cat >>confdefs.h <<_ACEOF
@@ -3119,6 +3211,10 @@ else
fi
AM_BACKSLASH='\'
+
+ac_config_headers="$ac_config_headers config.h"
+
+
case `pwd` in
*\ * | *\ *)
{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: Libtool does not cope well with whitespace in \`pwd\`" >&5
@@ -3298,7 +3394,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_CC="${ac_tool_prefix}gcc"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -3338,7 +3434,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_ac_ct_CC="gcc"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -3391,7 +3487,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_CC="${ac_tool_prefix}cc"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -3432,7 +3528,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
if test "$as_dir/$ac_word$ac_exec_ext" = "/usr/ucb/cc"; then
ac_prog_rejected=yes
continue
@@ -3490,7 +3586,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_CC="$ac_tool_prefix$ac_prog"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -3534,7 +3630,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_ac_ct_CC="$ac_prog"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -3980,7 +4076,8 @@ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
#include <stdarg.h>
#include <stdio.h>
-struct stat;
+#include <sys/types.h>
+#include <sys/stat.h>
/* Most of the following tests are stolen from RCS 5.7's src/conf.sh. */
struct buf { int x; };
FILE * (*rcsopen) (struct buf *, struct stat *, int);
@@ -4215,7 +4312,7 @@ do
for ac_prog in sed gsed; do
for ac_exec_ext in '' $ac_executable_extensions; do
ac_path_SED="$as_dir/$ac_prog$ac_exec_ext"
- as_fn_executable_p "$ac_path_SED" || continue
+ { test -f "$ac_path_SED" && $as_test_x "$ac_path_SED"; } || continue
# Check for GNU ac_path_SED and select it if it is found.
# Check for GNU $ac_path_SED
case `"$ac_path_SED" --version 2>&1` in
@@ -4291,7 +4388,7 @@ do
for ac_prog in grep ggrep; do
for ac_exec_ext in '' $ac_executable_extensions; do
ac_path_GREP="$as_dir/$ac_prog$ac_exec_ext"
- as_fn_executable_p "$ac_path_GREP" || continue
+ { test -f "$ac_path_GREP" && $as_test_x "$ac_path_GREP"; } || continue
# Check for GNU ac_path_GREP and select it if it is found.
# Check for GNU $ac_path_GREP
case `"$ac_path_GREP" --version 2>&1` in
@@ -4357,7 +4454,7 @@ do
for ac_prog in egrep; do
for ac_exec_ext in '' $ac_executable_extensions; do
ac_path_EGREP="$as_dir/$ac_prog$ac_exec_ext"
- as_fn_executable_p "$ac_path_EGREP" || continue
+ { test -f "$ac_path_EGREP" && $as_test_x "$ac_path_EGREP"; } || continue
# Check for GNU ac_path_EGREP and select it if it is found.
# Check for GNU $ac_path_EGREP
case `"$ac_path_EGREP" --version 2>&1` in
@@ -4424,7 +4521,7 @@ do
for ac_prog in fgrep; do
for ac_exec_ext in '' $ac_executable_extensions; do
ac_path_FGREP="$as_dir/$ac_prog$ac_exec_ext"
- as_fn_executable_p "$ac_path_FGREP" || continue
+ { test -f "$ac_path_FGREP" && $as_test_x "$ac_path_FGREP"; } || continue
# Check for GNU ac_path_FGREP and select it if it is found.
# Check for GNU $ac_path_FGREP
case `"$ac_path_FGREP" --version 2>&1` in
@@ -4680,7 +4777,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_DUMPBIN="$ac_tool_prefix$ac_prog"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -4724,7 +4821,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_ac_ct_DUMPBIN="$ac_prog"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -5148,7 +5245,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_OBJDUMP="${ac_tool_prefix}objdump"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -5188,7 +5285,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_ac_ct_OBJDUMP="objdump"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -5314,6 +5411,10 @@ freebsd* | dragonfly*)
fi
;;
+gnu*)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+
haiku*)
lt_cv_deplibs_check_method=pass_all
;;
@@ -5352,11 +5453,11 @@ irix5* | irix6* | nonstopux*)
;;
# This must be glibc/ELF.
-linux* | k*bsd*-gnu | kopensolaris*-gnu | gnu*)
+linux* | k*bsd*-gnu | kopensolaris*-gnu)
lt_cv_deplibs_check_method=pass_all
;;
-netbsd* | netbsdelf*-gnu)
+netbsd*)
if echo __ELF__ | $CC -E - | $GREP __ELF__ > /dev/null; then
lt_cv_deplibs_check_method='match_pattern /lib[^/]+(\.so\.[0-9]+\.[0-9]+|_pic\.a)$'
else
@@ -5490,7 +5591,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_DLLTOOL="${ac_tool_prefix}dlltool"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -5530,7 +5631,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_ac_ct_DLLTOOL="dlltool"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -5634,7 +5735,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_AR="$ac_tool_prefix$ac_prog"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -5678,7 +5779,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_ac_ct_AR="$ac_prog"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -5803,7 +5904,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_STRIP="${ac_tool_prefix}strip"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -5843,7 +5944,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_ac_ct_STRIP="strip"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -5902,7 +6003,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_RANLIB="${ac_tool_prefix}ranlib"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -5942,7 +6043,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_ac_ct_RANLIB="ranlib"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -6591,7 +6692,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_MANIFEST_TOOL="${ac_tool_prefix}mt"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -6631,7 +6732,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_ac_ct_MANIFEST_TOOL="mt"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -6711,7 +6812,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_DSYMUTIL="${ac_tool_prefix}dsymutil"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -6751,7 +6852,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_ac_ct_DSYMUTIL="dsymutil"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -6803,7 +6904,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_NMEDIT="${ac_tool_prefix}nmedit"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -6843,7 +6944,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_ac_ct_NMEDIT="nmedit"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -6895,7 +6996,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_LIPO="${ac_tool_prefix}lipo"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -6935,7 +7036,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_ac_ct_LIPO="lipo"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -6987,7 +7088,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_OTOOL="${ac_tool_prefix}otool"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -7027,7 +7128,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_ac_ct_OTOOL="otool"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -7079,7 +7180,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_OTOOL64="${ac_tool_prefix}otool64"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -7119,7 +7220,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_ac_ct_OTOOL64="otool64"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -8279,7 +8380,7 @@ lt_prog_compiler_static=
lt_prog_compiler_static='-non_shared'
;;
- linux* | k*bsd*-gnu | kopensolaris*-gnu | gnu*)
+ linux* | k*bsd*-gnu | kopensolaris*-gnu)
case $cc_basename in
# old Intel for x86_64 which still supported -KPIC.
ecc*)
@@ -8757,9 +8858,6 @@ $as_echo_n "checking whether the $compiler linker ($LD) supports shared librarie
openbsd*)
with_gnu_ld=no
;;
- linux* | k*bsd*-gnu | gnu*)
- link_all_deplibs=no
- ;;
esac
ld_shlibs=yes
@@ -8981,7 +9079,7 @@ _LT_EOF
fi
;;
- netbsd* | netbsdelf*-gnu)
+ netbsd*)
if echo __ELF__ | $CC -E - | $GREP __ELF__ >/dev/null; then
archive_cmds='$LD -Bshareable $libobjs $deplibs $linker_flags -o $lib'
wlarc=
@@ -9158,7 +9256,6 @@ _LT_EOF
if test "$aix_use_runtimelinking" = yes; then
shared_flag="$shared_flag "'${wl}-G'
fi
- link_all_deplibs=no
else
# not using gcc
if test "$host_cpu" = ia64; then
@@ -9612,7 +9709,7 @@ $as_echo "$lt_cv_irix_exported_symbol" >&6; }
link_all_deplibs=yes
;;
- netbsd* | netbsdelf*-gnu)
+ netbsd*)
if echo __ELF__ | $CC -E - | $GREP __ELF__ >/dev/null; then
archive_cmds='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags' # a.out
else
@@ -10449,6 +10546,17 @@ freebsd* | dragonfly*)
esac
;;
+gnu*)
+ version_type=linux # correct to gnu/linux during the next big refactor
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}${major} ${libname}${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=no
+ hardcode_into_libs=yes
+ ;;
+
haiku*)
version_type=linux # correct to gnu/linux during the next big refactor
need_lib_prefix=no
@@ -10565,7 +10673,7 @@ linux*oldld* | linux*aout* | linux*coff*)
;;
# This must be glibc/ELF.
-linux* | k*bsd*-gnu | kopensolaris*-gnu | gnu*)
+linux* | k*bsd*-gnu | kopensolaris*-gnu)
version_type=linux # correct to gnu/linux during the next big refactor
need_lib_prefix=no
need_version=no
@@ -10614,10 +10722,14 @@ fi
# before this can be enabled.
hardcode_into_libs=yes
+ # Add ABI-specific directories to the system library path.
+ sys_lib_dlsearch_path_spec="/lib64 /usr/lib64 /lib /usr/lib"
+
# Append ld.so.conf contents to the search path
if test -f /etc/ld.so.conf; then
lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;/^[ ]*hwcap[ ]/d;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;s/"//g;/^$/d' | tr '\n' ' '`
- sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
+ sys_lib_dlsearch_path_spec="$sys_lib_dlsearch_path_spec $lt_ld_extra"
+
fi
# We used to test for /lib/ld.so.1 and disable shared libraries on
@@ -10629,18 +10741,6 @@ fi
dynamic_linker='GNU/Linux ld.so'
;;
-netbsdelf*-gnu)
- version_type=linux
- need_lib_prefix=no
- need_version=no
- library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${shared_ext}'
- soname_spec='${libname}${release}${shared_ext}$major'
- shlibpath_var=LD_LIBRARY_PATH
- shlibpath_overrides_runpath=no
- hardcode_into_libs=yes
- dynamic_linker='NetBSD ld.elf_so'
- ;;
-
netbsd*)
version_type=sunos
need_lib_prefix=no
@@ -11612,6 +11712,15 @@ CC="$lt_save_CC"
+# Change default compilation flags
+#AC_SUBST([ALL_CXXFLAGS], [-std=c++0x])
+#CXXFLAGS="-std=c++0x $CXXFLAGS"
+ac_ext=cpp
+ac_cpp='$CXXCPP $CPPFLAGS'
+ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
+
ac_ext=cpp
ac_cpp='$CXXCPP $CPPFLAGS'
ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
@@ -11640,7 +11749,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_CXX="$ac_tool_prefix$ac_prog"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -11684,7 +11793,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_ac_ct_CXX="$ac_prog"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -11863,11 +11972,11 @@ else
CXXFLAGS=
fi
fi
-ac_ext=c
-ac_cpp='$CPP $CPPFLAGS'
-ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-ac_compiler_gnu=$ac_cv_c_compiler_gnu
+ac_ext=cpp
+ac_cpp='$CXXCPP $CPPFLAGS'
+ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
depcc="$CXX" am_compiler_list=
@@ -12137,11 +12246,11 @@ as_fn_error $? "C++ preprocessor \"$CXXCPP\" fails sanity check
See \`config.log' for more details" "$LINENO" 5; }
fi
-ac_ext=c
-ac_cpp='$CPP $CPPFLAGS'
-ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-ac_compiler_gnu=$ac_cv_c_compiler_gnu
+ac_ext=cpp
+ac_cpp='$CXXCPP $CPPFLAGS'
+ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
else
_lt_caught_CXX_error=yes
@@ -12806,6 +12915,9 @@ fi
ld_shlibs_CXX=yes
;;
+ gnu*)
+ ;;
+
haiku*)
archive_cmds_CXX='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib'
link_all_deplibs_CXX=yes
@@ -12967,7 +13079,7 @@ fi
inherit_rpath_CXX=yes
;;
- linux* | k*bsd*-gnu | kopensolaris*-gnu | gnu*)
+ linux* | k*bsd*-gnu | kopensolaris*-gnu)
case $cc_basename in
KCC*)
# Kuck and Associates, Inc. (KAI) C++ Compiler
@@ -13827,7 +13939,7 @@ lt_prog_compiler_static_CXX=
;;
esac
;;
- linux* | k*bsd*-gnu | kopensolaris*-gnu | gnu*)
+ linux* | k*bsd*-gnu | kopensolaris*-gnu)
case $cc_basename in
KCC*)
# KAI C++ Compiler
@@ -13891,7 +14003,7 @@ lt_prog_compiler_static_CXX=
;;
esac
;;
- netbsd* | netbsdelf*-gnu)
+ netbsd*)
;;
*qnx* | *nto*)
# QNX uses GNU C++, but need to define -shared option too, otherwise
@@ -14262,9 +14374,6 @@ $as_echo_n "checking whether the $compiler linker ($LD) supports shared librarie
;;
esac
;;
- linux* | k*bsd*-gnu | gnu*)
- link_all_deplibs_CXX=no
- ;;
*)
export_symbols_cmds_CXX='$NM $libobjs $convenience | $global_symbol_pipe | $SED '\''s/.* //'\'' | sort | uniq > $export_symbols'
;;
@@ -14699,6 +14808,17 @@ freebsd* | dragonfly*)
esac
;;
+gnu*)
+ version_type=linux # correct to gnu/linux during the next big refactor
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}${major} ${libname}${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=no
+ hardcode_into_libs=yes
+ ;;
+
haiku*)
version_type=linux # correct to gnu/linux during the next big refactor
need_lib_prefix=no
@@ -14815,7 +14935,7 @@ linux*oldld* | linux*aout* | linux*coff*)
;;
# This must be glibc/ELF.
-linux* | k*bsd*-gnu | kopensolaris*-gnu | gnu*)
+linux* | k*bsd*-gnu | kopensolaris*-gnu)
version_type=linux # correct to gnu/linux during the next big refactor
need_lib_prefix=no
need_version=no
@@ -14864,10 +14984,14 @@ fi
# before this can be enabled.
hardcode_into_libs=yes
+ # Add ABI-specific directories to the system library path.
+ sys_lib_dlsearch_path_spec="/lib64 /usr/lib64 /lib /usr/lib"
+
# Append ld.so.conf contents to the search path
if test -f /etc/ld.so.conf; then
lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;/^[ ]*hwcap[ ]/d;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;s/"//g;/^$/d' | tr '\n' ' '`
- sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
+ sys_lib_dlsearch_path_spec="$sys_lib_dlsearch_path_spec $lt_ld_extra"
+
fi
# We used to test for /lib/ld.so.1 and disable shared libraries on
@@ -14879,18 +15003,6 @@ fi
dynamic_linker='GNU/Linux ld.so'
;;
-netbsdelf*-gnu)
- version_type=linux
- need_lib_prefix=no
- need_version=no
- library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${shared_ext}'
- soname_spec='${libname}${release}${shared_ext}$major'
- shlibpath_var=LD_LIBRARY_PATH
- shlibpath_overrides_runpath=no
- hardcode_into_libs=yes
- dynamic_linker='NetBSD ld.elf_so'
- ;;
-
netbsd*)
version_type=sunos
need_lib_prefix=no
@@ -15190,16 +15302,13 @@ fi
lt_cv_prog_gnu_ld=$lt_save_with_gnu_ld
fi # test "$_lt_caught_CXX_error" != yes
-ac_ext=c
-ac_cpp='$CPP $CPPFLAGS'
-ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-ac_compiler_gnu=$ac_cv_c_compiler_gnu
-
-
+ac_ext=cpp
+ac_cpp='$CXXCPP $CPPFLAGS'
+ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
-ac_config_headers="$ac_config_headers config.h"
@@ -15224,7 +15333,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_MD5="md5sum"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -15263,7 +15372,7 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_MD5="md5 -r"
$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
@@ -15317,7 +15426,7 @@ $as_echo "#define HALF_FLOATS 1" >>confdefs.h
fi
-ac_fn_c_check_type "$LINENO" "__int128" "ac_cv_type___int128" "$ac_includes_default"
+ac_fn_cxx_check_type "$LINENO" "__int128" "ac_cv_type___int128" "$ac_includes_default"
if test "x$ac_cv_type___int128" = xyes; then :
$as_echo "#define HAVE_INT128 1" >>confdefs.h
@@ -15327,7 +15436,7 @@ fi
# Check the version of strerror_r
-ac_fn_c_check_decl "$LINENO" "strerror_r" "ac_cv_have_decl_strerror_r" "$ac_includes_default"
+ac_fn_cxx_check_decl "$LINENO" "strerror_r" "ac_cv_have_decl_strerror_r" "$ac_includes_default"
if test "x$ac_cv_have_decl_strerror_r" = xyes; then :
ac_have_decl=1
else
@@ -15340,7 +15449,7 @@ _ACEOF
for ac_func in strerror_r
do :
- ac_fn_c_check_func "$LINENO" "strerror_r" "ac_cv_func_strerror_r"
+ ac_fn_cxx_check_func "$LINENO" "strerror_r" "ac_cv_func_strerror_r"
if test "x$ac_cv_func_strerror_r" = xyes; then :
cat >>confdefs.h <<_ACEOF
#define HAVE_STRERROR_R 1
@@ -15373,7 +15482,7 @@ main ()
return 0;
}
_ACEOF
-if ac_fn_c_try_compile "$LINENO"; then :
+if ac_fn_cxx_try_compile "$LINENO"; then :
ac_cv_func_strerror_r_char_p=yes
fi
rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
@@ -15401,7 +15510,7 @@ char buf[100];
return 0;
}
_ACEOF
-if ac_fn_c_try_run "$LINENO"; then :
+if ac_fn_cxx_try_run "$LINENO"; then :
ac_cv_func_strerror_r_char_p=yes
fi
rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext \
@@ -15420,12 +15529,14 @@ $as_echo "#define STRERROR_R_CHAR_P 1" >>confdefs.h
fi
-for ac_header in execinfo.h
+
+for ac_header in execinfo.h sys/syscall.h
do :
- ac_fn_c_check_header_mongrel "$LINENO" "execinfo.h" "ac_cv_header_execinfo_h" "$ac_includes_default"
-if test "x$ac_cv_header_execinfo_h" = xyes; then :
+ as_ac_Header=`$as_echo "ac_cv_header_$ac_header" | $as_tr_sh`
+ac_fn_cxx_check_header_mongrel "$LINENO" "$ac_header" "$as_ac_Header" "$ac_includes_default"
+if eval test \"x\$"$as_ac_Header"\" = x"yes"; then :
cat >>confdefs.h <<_ACEOF
-#define HAVE_EXECINFO_H 1
+#define `$as_echo "HAVE_$ac_header" | $as_tr_cpp` 1
_ACEOF
fi
@@ -15433,7 +15544,7 @@ fi
done
-ac_fn_c_check_member "$LINENO" "siginfo_t" "si_int" "ac_cv_member_siginfo_t_si_int" "#include <signal.h>
+ac_fn_cxx_check_member "$LINENO" "siginfo_t" "si_int" "ac_cv_member_siginfo_t_si_int" "#include <signal.h>
"
if test "x$ac_cv_member_siginfo_t_si_int" = xyes; then :
@@ -15882,16 +15993,16 @@ if (echo >conf$$.file) 2>/dev/null; then
# ... but there are two gotchas:
# 1) On MSYS, both `ln -s file dir' and `ln file dir' fail.
# 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable.
- # In both cases, we have to default to `cp -pR'.
+ # In both cases, we have to default to `cp -p'.
ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe ||
- as_ln_s='cp -pR'
+ as_ln_s='cp -p'
elif ln conf$$.file conf$$ 2>/dev/null; then
as_ln_s=ln
else
- as_ln_s='cp -pR'
+ as_ln_s='cp -p'
fi
else
- as_ln_s='cp -pR'
+ as_ln_s='cp -p'
fi
rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
rmdir conf$$.dir 2>/dev/null
@@ -15951,16 +16062,28 @@ else
as_mkdir_p=false
fi
-
-# as_fn_executable_p FILE
-# -----------------------
-# Test if FILE is an executable regular file.
-as_fn_executable_p ()
-{
- test -f "$1" && test -x "$1"
-} # as_fn_executable_p
-as_test_x='test -x'
-as_executable_p=as_fn_executable_p
+if test -x / >/dev/null 2>&1; then
+ as_test_x='test -x'
+else
+ if ls -dL / >/dev/null 2>&1; then
+ as_ls_L_option=L
+ else
+ as_ls_L_option=
+ fi
+ as_test_x='
+ eval sh -c '\''
+ if test -d "$1"; then
+ test -d "$1/.";
+ else
+ case $1 in #(
+ -*)set "./$1";;
+ esac;
+ case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in #((
+ ???[sx]*):;;*)false;;esac;fi
+ '\'' sh
+ '
+fi
+as_executable_p=$as_test_x
# Sed expression to map a string onto a valid CPP name.
as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
@@ -15981,8 +16104,8 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
# report actual input values of CONFIG_FILES etc. instead of their
# values after options handling.
ac_log="
-This file was extended by jellyfish $as_me 1.1.10, which was
-generated by GNU Autoconf 2.69. Invocation command line was
+This file was extended by jellyfish $as_me 1.1.11, which was
+generated by GNU Autoconf 2.68. Invocation command line was
CONFIG_FILES = $CONFIG_FILES
CONFIG_HEADERS = $CONFIG_HEADERS
@@ -16047,11 +16170,11 @@ _ACEOF
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
ac_cs_version="\\
-jellyfish config.status 1.1.10
-configured by $0, generated by GNU Autoconf 2.69,
+jellyfish config.status 1.1.11
+configured by $0, generated by GNU Autoconf 2.68,
with options \\"\$ac_cs_config\\"
-Copyright (C) 2012 Free Software Foundation, Inc.
+Copyright (C) 2010 Free Software Foundation, Inc.
This config.status script is free software; the Free Software Foundation
gives unlimited permission to copy, distribute and modify it."
@@ -16142,7 +16265,7 @@ fi
_ACEOF
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
if \$ac_cs_recheck; then
- set X $SHELL '$0' $ac_configure_args \$ac_configure_extra_args --no-create --no-recursion
+ set X '$SHELL' '$0' $ac_configure_args \$ac_configure_extra_args --no-create --no-recursion
shift
\$as_echo "running CONFIG_SHELL=$SHELL \$*" >&6
CONFIG_SHELL='$SHELL'
@@ -16551,9 +16674,9 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
for ac_config_target in $ac_config_targets
do
case $ac_config_target in
+ "config.h") CONFIG_HEADERS="$CONFIG_HEADERS config.h" ;;
"depfiles") CONFIG_COMMANDS="$CONFIG_COMMANDS depfiles" ;;
"libtool") CONFIG_COMMANDS="$CONFIG_COMMANDS libtool" ;;
- "config.h") CONFIG_HEADERS="$CONFIG_HEADERS config.h" ;;
"Makefile") CONFIG_FILES="$CONFIG_FILES Makefile" ;;
"tests/compat.sh") CONFIG_FILES="$CONFIG_FILES tests/compat.sh" ;;
"jellyfish-1.1.pc") CONFIG_FILES="$CONFIG_FILES jellyfish-1.1.pc" ;;
diff --git a/configure.ac b/configure.ac
index 6fd5441..d650d0f 100644
--- a/configure.ac
+++ b/configure.ac
@@ -1,14 +1,19 @@
-AC_INIT([jellyfish], [1.1.10], [gmarcais at umd.edu])
+AC_INIT([jellyfish], [1.1.11], [gmarcais at umd.edu])
AC_CANONICAL_HOST
AC_CONFIG_MACRO_DIR([m4])
AM_INIT_AUTOMAKE([subdir-objects foreign parallel-tests color-tests])
AM_SILENT_RULES([yes])
-LT_INIT
+AC_CONFIG_SRCDIR([jellyfish])
+AC_CONFIG_HEADERS([config.h])
+AC_CONFIG_MACRO_DIR([m4])
+AC_PROG_LIBTOOL
+# Change default compilation flags
+#AC_SUBST([ALL_CXXFLAGS], [-std=c++0x])
+#CXXFLAGS="-std=c++0x $CXXFLAGS"
+AC_LANG(C++)
AC_PROG_CXX
-AC_CONFIG_MACRO_DIR([m4])
-AC_CONFIG_HEADERS([config.h])
dnl define([concat], $1$2$3)dnl
dnl define([PC_FILE], concat([jellyfish-],AC_PACKAGE_VERSION,[.pc]))
@@ -46,7 +51,7 @@ AC_CHECK_TYPE([__int128],
# Check the version of strerror_r
AC_FUNC_STRERROR_R
-AC_CHECK_HEADERS([execinfo.h])
+AC_CHECK_HEADERS([execinfo.h sys/syscall.h])
AC_CHECK_MEMBER([siginfo_t.si_int],
[AC_DEFINE([HAVE_SI_INT], [1], [Define if siginfo_t.si_int exists])],
diff --git a/jellyfish/cite.cc b/jellyfish/cite.cc
index 2c3d0cb..087ab3a 100644
--- a/jellyfish/cite.cc
+++ b/jellyfish/cite.cc
@@ -40,11 +40,12 @@ const char *bibtex =
#include <iostream>
#include <fstream>
#include <stdlib.h>
-#include <jellyfish/cite_cmdline.hpp>
#include <jellyfish/err.hpp>
#include <jellyfish/misc.hpp>
#include <jellyfish/fstream_default.hpp>
+#include <jellyfish/cite_cmdline.hpp>
+
int cite_main(int argc, char *argv[])
{
cite_cmdline args(argc, argv);
diff --git a/jellyfish/concurrent_queues.hpp b/jellyfish/concurrent_queues.hpp
index 1bac387..4068849 100644
--- a/jellyfish/concurrent_queues.hpp
+++ b/jellyfish/concurrent_queues.hpp
@@ -18,7 +18,6 @@
#define __JELLYFISH_CONCURRENT_QUEUES_HPP__
#include <sys/time.h>
-#include <sys/syscall.h>
#include <unistd.h>
#include <string.h>
#include <errno.h>
diff --git a/jellyfish/dbg.cc b/jellyfish/dbg.cc
index b953224..4652939 100644
--- a/jellyfish/dbg.cc
+++ b/jellyfish/dbg.cc
@@ -16,7 +16,14 @@
#include <jellyfish/dbg.hpp>
#include <jellyfish/time.hpp>
+
+#ifdef HAVE_CONFIG_H
+#include <config.h>
+#endif
+
+#ifdef HAVE_SYS_SYSCALL_H
#include <sys/syscall.h>
+#endif
namespace dbg {
pthread_mutex_t print_t::_lock = PTHREAD_MUTEX_INITIALIZER;
diff --git a/jellyfish/dumper.hpp b/jellyfish/dumper.hpp
index 47b8098..7d2138b 100644
--- a/jellyfish/dumper.hpp
+++ b/jellyfish/dumper.hpp
@@ -19,6 +19,7 @@
#include <iostream>
#include <fstream>
+#include <sstream>
#include <jellyfish/err.hpp>
#include <jellyfish/time.hpp>
@@ -34,27 +35,13 @@ namespace jellyfish {
protected:
void open_next_file(const char *prefix, int *index, std::ofstream &out) {
- static const long file_len = pathconf("/", _PC_PATH_MAX);
+ int eindex = atomic::gcc::fetch_add(index, (int)1);
+ std::ostringstream file_path;
+ file_path << prefix << "_" << eindex;
- char file[file_len + 1];
- file[file_len] = '\0';
- int off = snprintf(file, file_len, "%s", prefix);
- if(off < 0)
- eraise(ErrorWriting) << "Error creating output path" << err::no;
- if(off > 0 && off < file_len) {
- int eindex = atomic::gcc::fetch_add(index, (int)1);
- int _off = snprintf(file + off, file_len - off, "_%d", eindex);
- if(_off < 0)
- eraise(ErrorWriting) << "Error creating output path" << err::no;
- off += _off;
- }
- if(off >= file_len)
- eraise(ErrorWriting) << "Output path is longer than maximum path length ("
- << off << " > " << file_len << ")";
-
- out.open(file);
+ out.open(file_path.str().c_str());
if(out.fail())
- eraise(ErrorWriting) << "'" << (char*)file << "': "
+ eraise(ErrorWriting) << "'" << file_path.str() << "': "
<< "Can't open file for writing" << err::no;
}
diff --git a/jellyfish/err.hpp b/jellyfish/err.hpp
index 50e4bf9..e960aa3 100644
--- a/jellyfish/err.hpp
+++ b/jellyfish/err.hpp
@@ -26,6 +26,18 @@
#include <string.h>
#include <errno.h>
+#ifdef HAVE_CONFIG_H
+#include <config.h>
+#endif
+
+#if HAVE_DECL_STRERROR_R == 0
+#ifdef STRERROR_R_CHAR_P
+extern char* strerror_r(int, char*, size_t);
+#else
+extern int strerror_r(int, char*, size_t);
+#endif
+#endif
+
namespace err {
class code {
int _code;
@@ -38,9 +50,22 @@ namespace err {
public:
no_t() {}
static void write(std::ostream &os, int e) {
- char err_str[4096];
- strerror_r(e, err_str, sizeof(err_str));
- os << ": " << err_str;
+ char err_str[1024];
+ char* str;
+
+#ifdef STRERROR_R_CHAR_P
+ str = strerror_r(e, err_str, sizeof(err_str));
+ if(!str) { // Should never happen
+ strcpy(err_str, "error");
+ str = err_str;
+ }
+#else
+ int err = strerror_r(e, err_str, sizeof(err_str));
+ if(err)
+ strcpy(err_str, "error");
+ str = err_str;
+#endif
+ os << ": " << str;
}
};
static const no_t no;
diff --git a/jellyfish/file_parser.cc b/jellyfish/file_parser.cc
index 7a69412..e374220 100644
--- a/jellyfish/file_parser.cc
+++ b/jellyfish/file_parser.cc
@@ -34,7 +34,7 @@ int jellyfish::file_parser::file_peek(const char *path, char *peek) {
<< path << "'" << err::no;
if(read(fd, peek, 1) <= 0)
- eraise(FileParserError) << "Empty input file '" << path << "'";
+ eraise(FileParserError) << "Empty input file '" << path << "'" << err::no;
return fd;
}
diff --git a/jellyfish/square_binary_matrix.cc b/jellyfish/square_binary_matrix.cc
index 925e81b..5ecab6d 100644
--- a/jellyfish/square_binary_matrix.cc
+++ b/jellyfish/square_binary_matrix.cc
@@ -15,9 +15,18 @@
*/
#include <config.h>
-#include <jellyfish/square_binary_matrix.hpp>
#include <iostream>
#include <sstream>
+#include <jellyfish/misc.hpp>
+#include <jellyfish/square_binary_matrix.hpp>
+
+#ifndef random
+// Implement random from the old rand() function. Don't trust low bit
+// to be as random, so call rand twice and reverse one of the result.
+long random() {
+ return rand() ^ reverse_bits((uint32_t)rand());
+}
+#endif
void SquareBinaryMatrix::init_random() {
uint64_t _mask = mask();
diff --git a/ltmain.sh b/ltmain.sh
index 33f642a..63ae69d 100644
--- a/ltmain.sh
+++ b/ltmain.sh
@@ -70,7 +70,7 @@
# compiler: $LTCC
# compiler flags: $LTCFLAGS
# linker: $LD (gnu? $with_gnu_ld)
-# $progname: (GNU libtool) 2.4.2 Debian-2.4.2-1.1
+# $progname: (GNU libtool) 2.4.2
# automake: $automake_version
# autoconf: $autoconf_version
#
@@ -80,7 +80,7 @@
PROGRAM=libtool
PACKAGE=libtool
-VERSION="2.4.2 Debian-2.4.2-1.1"
+VERSION=2.4.2
TIMESTAMP=""
package_revision=1.3337
@@ -6124,10 +6124,7 @@ func_mode_link ()
case $pass in
dlopen) libs="$dlfiles" ;;
dlpreopen) libs="$dlprefiles" ;;
- link)
- libs="$deplibs %DEPLIBS%"
- test "X$link_all_deplibs" != Xno && libs="$libs $dependency_libs"
- ;;
+ link) libs="$deplibs %DEPLIBS% $dependency_libs" ;;
esac
fi
if test "$linkmode,$pass" = "lib,dlpreopen"; then
@@ -6447,19 +6444,19 @@ func_mode_link ()
# It is a libtool convenience library, so add in its objects.
func_append convenience " $ladir/$objdir/$old_library"
func_append old_convenience " $ladir/$objdir/$old_library"
- tmp_libs=
- for deplib in $dependency_libs; do
- deplibs="$deplib $deplibs"
- if $opt_preserve_dup_deps ; then
- case "$tmp_libs " in
- *" $deplib "*) func_append specialdeplibs " $deplib" ;;
- esac
- fi
- func_append tmp_libs " $deplib"
- done
elif test "$linkmode" != prog && test "$linkmode" != lib; then
func_fatal_error "\`$lib' is not a convenience library"
fi
+ tmp_libs=
+ for deplib in $dependency_libs; do
+ deplibs="$deplib $deplibs"
+ if $opt_preserve_dup_deps ; then
+ case "$tmp_libs " in
+ *" $deplib "*) func_append specialdeplibs " $deplib" ;;
+ esac
+ fi
+ func_append tmp_libs " $deplib"
+ done
continue
fi # $pass = conv
@@ -7352,9 +7349,6 @@ func_mode_link ()
revision="$number_minor"
lt_irix_increment=no
;;
- *)
- func_fatal_configuration "$modename: unknown library version type \`$version_type'"
- ;;
esac
;;
no)
diff --git a/m4/libtool.m4 b/m4/libtool.m4
index 534d1cc..56666f0 100644
--- a/m4/libtool.m4
+++ b/m4/libtool.m4
@@ -2512,6 +2512,17 @@ freebsd* | dragonfly*)
esac
;;
+gnu*)
+ version_type=linux # correct to gnu/linux during the next big refactor
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}${major} ${libname}${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=no
+ hardcode_into_libs=yes
+ ;;
+
haiku*)
version_type=linux # correct to gnu/linux during the next big refactor
need_lib_prefix=no
@@ -2628,7 +2639,7 @@ linux*oldld* | linux*aout* | linux*coff*)
;;
# This must be glibc/ELF.
-linux* | k*bsd*-gnu | kopensolaris*-gnu | gnu*)
+linux* | k*bsd*-gnu | kopensolaris*-gnu)
version_type=linux # correct to gnu/linux during the next big refactor
need_lib_prefix=no
need_version=no
@@ -2658,10 +2669,14 @@ linux* | k*bsd*-gnu | kopensolaris*-gnu | gnu*)
# before this can be enabled.
hardcode_into_libs=yes
+ # Add ABI-specific directories to the system library path.
+ sys_lib_dlsearch_path_spec="/lib64 /usr/lib64 /lib /usr/lib"
+
# Append ld.so.conf contents to the search path
if test -f /etc/ld.so.conf; then
lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \[$]2)); skip = 1; } { if (!skip) print \[$]0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;/^[ ]*hwcap[ ]/d;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;s/"//g;/^$/d' | tr '\n' ' '`
- sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
+ sys_lib_dlsearch_path_spec="$sys_lib_dlsearch_path_spec $lt_ld_extra"
+
fi
# We used to test for /lib/ld.so.1 and disable shared libraries on
@@ -2673,18 +2688,6 @@ linux* | k*bsd*-gnu | kopensolaris*-gnu | gnu*)
dynamic_linker='GNU/Linux ld.so'
;;
-netbsdelf*-gnu)
- version_type=linux
- need_lib_prefix=no
- need_version=no
- library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${shared_ext}'
- soname_spec='${libname}${release}${shared_ext}$major'
- shlibpath_var=LD_LIBRARY_PATH
- shlibpath_overrides_runpath=no
- hardcode_into_libs=yes
- dynamic_linker='NetBSD ld.elf_so'
- ;;
-
netbsd*)
version_type=sunos
need_lib_prefix=no
@@ -3244,6 +3247,10 @@ freebsd* | dragonfly*)
fi
;;
+gnu*)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+
haiku*)
lt_cv_deplibs_check_method=pass_all
;;
@@ -3282,11 +3289,11 @@ irix5* | irix6* | nonstopux*)
;;
# This must be glibc/ELF.
-linux* | k*bsd*-gnu | kopensolaris*-gnu | gnu*)
+linux* | k*bsd*-gnu | kopensolaris*-gnu)
lt_cv_deplibs_check_method=pass_all
;;
-netbsd* | netbsdelf*-gnu)
+netbsd*)
if echo __ELF__ | $CC -E - | $GREP __ELF__ > /dev/null; then
lt_cv_deplibs_check_method='match_pattern /lib[[^/]]+(\.so\.[[0-9]]+\.[[0-9]]+|_pic\.a)$'
else
@@ -4034,7 +4041,7 @@ m4_if([$1], [CXX], [
;;
esac
;;
- linux* | k*bsd*-gnu | kopensolaris*-gnu | gnu*)
+ linux* | k*bsd*-gnu | kopensolaris*-gnu)
case $cc_basename in
KCC*)
# KAI C++ Compiler
@@ -4098,7 +4105,7 @@ m4_if([$1], [CXX], [
;;
esac
;;
- netbsd* | netbsdelf*-gnu)
+ netbsd*)
;;
*qnx* | *nto*)
# QNX uses GNU C++, but need to define -shared option too, otherwise
@@ -4333,7 +4340,7 @@ m4_if([$1], [CXX], [
_LT_TAGVAR(lt_prog_compiler_static, $1)='-non_shared'
;;
- linux* | k*bsd*-gnu | kopensolaris*-gnu | gnu*)
+ linux* | k*bsd*-gnu | kopensolaris*-gnu)
case $cc_basename in
# old Intel for x86_64 which still supported -KPIC.
ecc*)
@@ -4575,9 +4582,6 @@ m4_if([$1], [CXX], [
;;
esac
;;
- linux* | k*bsd*-gnu | gnu*)
- _LT_TAGVAR(link_all_deplibs, $1)=no
- ;;
*)
_LT_TAGVAR(export_symbols_cmds, $1)='$NM $libobjs $convenience | $global_symbol_pipe | $SED '\''s/.* //'\'' | sort | uniq > $export_symbols'
;;
@@ -4640,9 +4644,6 @@ dnl Note also adjust exclude_expsyms for C++ above.
openbsd*)
with_gnu_ld=no
;;
- linux* | k*bsd*-gnu | gnu*)
- _LT_TAGVAR(link_all_deplibs, $1)=no
- ;;
esac
_LT_TAGVAR(ld_shlibs, $1)=yes
@@ -4864,7 +4865,7 @@ _LT_EOF
fi
;;
- netbsd* | netbsdelf*-gnu)
+ netbsd*)
if echo __ELF__ | $CC -E - | $GREP __ELF__ >/dev/null; then
_LT_TAGVAR(archive_cmds, $1)='$LD -Bshareable $libobjs $deplibs $linker_flags -o $lib'
wlarc=
@@ -5041,7 +5042,6 @@ _LT_EOF
if test "$aix_use_runtimelinking" = yes; then
shared_flag="$shared_flag "'${wl}-G'
fi
- _LT_TAGVAR(link_all_deplibs, $1)=no
else
# not using gcc
if test "$host_cpu" = ia64; then
@@ -5346,7 +5346,7 @@ _LT_EOF
_LT_TAGVAR(link_all_deplibs, $1)=yes
;;
- netbsd* | netbsdelf*-gnu)
+ netbsd*)
if echo __ELF__ | $CC -E - | $GREP __ELF__ >/dev/null; then
_LT_TAGVAR(archive_cmds, $1)='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags' # a.out
else
@@ -6226,6 +6226,9 @@ if test "$_lt_caught_CXX_error" != yes; then
_LT_TAGVAR(ld_shlibs, $1)=yes
;;
+ gnu*)
+ ;;
+
haiku*)
_LT_TAGVAR(archive_cmds, $1)='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib'
_LT_TAGVAR(link_all_deplibs, $1)=yes
@@ -6387,7 +6390,7 @@ if test "$_lt_caught_CXX_error" != yes; then
_LT_TAGVAR(inherit_rpath, $1)=yes
;;
- linux* | k*bsd*-gnu | kopensolaris*-gnu | gnu*)
+ linux* | k*bsd*-gnu | kopensolaris*-gnu)
case $cc_basename in
KCC*)
# Kuck and Associates, Inc. (KAI) C++ Compiler
diff --git a/tests/compat.sh.in b/tests/compat.sh.in
index 90971bd..ee924d5 100644
--- a/tests/compat.sh.in
+++ b/tests/compat.sh.in
@@ -6,7 +6,7 @@ DIR=../bin
JF=$DIR/jellyfish
check () {
- cut -d\ -f 2 $1 | xargs @MD5@ | sort | diff -w $1 -
+ cut -d\ -f 2 $1 | xargs @MD5@ | sed -e 's/ \*//' | sort | diff -w $1 -
}
if [ -n "$DEBUG" ]; then
--
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