[med-svn] [picard-tools] 03/04: Found files under LGPL-2.1

[Charles Plessy]

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plessy pushed a commit to branch master
in repository picard-tools.

commit a7b682816ff9a6bb9c847a2a7254cac92e43f1d3
Author: Charles Plessy <plessy at debian.org>
Date:   Sat Mar 22 11:30:44 2014 +0900

    Found files under LGPL-2.1
---
 debian/copyright | 67 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 67 insertions(+)

diff --git a/debian/copyright b/debian/copyright
index 72ea71e..7248db8 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -142,6 +142,73 @@ Comment:
  On Debian systems, the complete text of the GNU General Public License
  version 2 is available in the file ‘/usr/share/common-licenses/GPL-2’.
 
+Files: src/java/net/sf/samtools/seekablestream/SeekableFTPStream.java
+ src/java/net/sf/samtools/seekablestream/SeekableFTPStreamHelper.java
+ src/java/net/sf/samtools/seekablestream/SeekableFileStream.java
+ src/java/net/sf/samtools/util/ftp/FTPClient.java
+ src/java/net/sf/samtools/util/ftp/FTPReply.java
+ src/java/net/sf/samtools/util/ftp/FTPStream.java
+ src/java/net/sf/samtools/util/ftp/FTPUtils.java
+ src/java/org/broad/tribble/AbstractFeatureReader.java
+ src/java/org/broad/tribble/AsciiFeatureCodec.java
+ src/java/org/broad/tribble/CloseableTribbleIterator.java
+ src/java/org/broad/tribble/FeatureCodec.java
+ src/java/org/broad/tribble/FeatureReader.java
+ src/java/org/broad/tribble/index/AbstractIndex.java
+ src/java/org/broad/tribble/index/interval/Interval.java
+ src/java/org/broad/tribble/index/interval/IntervalIndexCreator.java
+ src/java/org/broad/tribble/index/interval/IntervalTree.java
+ src/java/org/broad/tribble/index/interval/IntervalTreeIndex.java
+ src/java/org/broad/tribble/index/linear/LinearIndex.java
+ src/java/org/broad/tribble/readers/AsciiLineReader.java
+ src/java/org/broad/tribble/readers/PositionalBufferedStream.java
+ src/java/org/broad/tribble/util/HTTPHelper.java
+ src/java/org/broad/tribble/util/URLHelper.java
+ src/tests/java/org/broad/tribble/index/interval/IntervalTreeTest.java
+ src/tests/java/org/broad/tribble/index/linear/LinearIndexTest.java
+Comment: git grep 'lgpl-2.1' | cut -f 1 -d ':'
+ git grep 'lgpl-2.1' | cut -f 1 -d ':' | xargs grep -h Copyright
+Copyright: * Copyright (c) 2007-2011 by The Broad Institute of MIT and Harvard.  All Rights Reserved.
+ * Copyright (c) 2007-2011 by The Broad Institute of MIT and Harvard.  All Rights Reserved.
+ * Copyright (c) 2007-2009 by The Broad Institute, Inc. and the Massachusetts Institute of Technology.
+ * Copyright (c) 2007-2011 by The Broad Institute of MIT and Harvard.  All Rights Reserved.
+ * Copyright (c) 2007-2011 by The Broad Institute of MIT and Harvard.  All Rights Reserved.
+ * Copyright (c) 2007-2011 by The Broad Institute of MIT and Harvard.  All Rights Reserved.
+ * Copyright (c) 2007-2011 by The Broad Institute of MIT and Harvard.  All Rights Reserved.
+ * Copyright (c) 2007-2010 by The Broad Institute, Inc. and the Massachusetts Institute of Technology.
+ * Copyright (c) 2007-2010 by The Broad Institute, Inc. and the Massachusetts Institute of Technology.
+ * Copyright (c) 2009-2010 by The Broad Institute, Inc.
+ * Copyright (c) 2007-2010 by The Broad Institute, Inc. and the Massachusetts Institute of Technology.
+ * Copyright (c) 2007-2010 by The Broad Institute, Inc. and the Massachusetts Institute of Technology.
+ * Copyright (c) 2007-2010 by The Broad Institute, Inc. and the Massachusetts Institute of Technology.
+ * Copyright (c) 2007-2010 by The Broad Institute, Inc. and the Massachusetts Institute of Technology.
+ * Copyright (c) 2007-2010 by The Broad Institute, Inc. and the Massachusetts Institute of Technology.
+ * Copyright (c) 2007-2010 by The Broad Institute, Inc. and the Massachusetts Institute of Technology.
+ * Copyright (c) 2007-2010 by The Broad Institute, Inc. and the Massachusetts Institute of Technology.
+ * Copyright (c) 2009-2010 by The Broad Institute, Inc.
+ * Copyright (c) 2007-2009 by The Broad Institute, Inc. and the Massachusetts Institute of Technology.
+ * Copyright (c) 2007-2009 by The Broad Institute, Inc. and the Massachusetts Institute of Technology.
+ * Copyright (c) 2007-2011 by The Broad Institute of MIT and Harvard.  All Rights Reserved.
+ * Copyright (c) 2007-2011 by The Broad Institute of MIT and Harvard.  All Rights Reserved.
+ * Copyright (c) 2007-2010 by The Broad Institute, Inc. and the Massachusetts Institute of Technology.
+ * Copyright (c) 2009-2010 by The Broad Institute, Inc.
+License: LGPL-2.1
+ Quoted from ‘/usr/share/common-licenses/LGPL-2.1’:
+ .
+ This library is free software; you can redistribute it and/or
+ modify it under the terms of the GNU Lesser General Public
+ License as published by the Free Software Foundation; either
+ version 2.1 of the License, or (at your option) any later version.
+ .
+ This library is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ Lesser General Public License for more details.
+ .
+ You should have received a copy of the GNU Lesser General Public
+ License along with this library; if not, write to the Free Software
+ Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301  USA
+
 Files: debian/*
 Copyright: 2010 Shaun Jackman <sjackman at debian.org>
            2013 Olivier Sallou <osallou at debian.org>

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