[med-svn] r16510 - trunk/packages/galaxy/trunk/debian

[Timothy Booth]

Author: tbooth-guest
Date: 2014-03-24 12:05:13 +0000 (Mon, 24 Mar 2014)
New Revision: 16510

Modified:
   trunk/packages/galaxy/trunk/debian/changelog
   trunk/packages/galaxy/trunk/debian/control
Log:
Don't build galaxy-server-all from this package any more.


Modified: trunk/packages/galaxy/trunk/debian/changelog
===================================================================
--- trunk/packages/galaxy/trunk/debian/changelog	2014-03-24 11:32:27 UTC (rev 16509)
+++ trunk/packages/galaxy/trunk/debian/changelog	2014-03-24 12:05:13 UTC (rev 16510)
@@ -1,8 +1,11 @@
-galaxy (1.bl.py27.20140210-0biolinux2) precise; urgency=low
+galaxy (1.bl.py27.20140210-0biolinux4) precise; urgency=low
 
   * Fixed misspelling of shed-tools/shed_tools that messed up symlinks 
+  * Don't build galaxy-server-all from this package any more, as the tool
+    defs are not distributed in the Gaalxy core.
+  * Why is this package not building on the PPA?
 
- -- Tim Booth <tbooth at ceh.ac.uk>  Thu, 20 Mar 2014 11:49:33 +0000
+ -- Tim Booth <tbooth at ceh.ac.uk>  Mon, 24 Mar 2014 10:49:50 +0000
 
 galaxy (1.bl.py27.20140210-0biolinux1) precise; urgency=low
 

Modified: trunk/packages/galaxy/trunk/debian/control
===================================================================
--- trunk/packages/galaxy/trunk/debian/control	2014-03-24 11:32:27 UTC (rev 16509)
+++ trunk/packages/galaxy/trunk/debian/control	2014-03-24 12:05:13 UTC (rev 16510)
@@ -27,53 +27,6 @@
  This data comes in the main download and is useful for testing
  but isn't needed to run a regular Galaxy server.
 
-Package: galaxy-server-all
-Architecture: amd64
-Recommends: galaxy-server-test, ucsc-tools-non-free, laj, seqan-dev, mothur
-Depends: ${misc:Depends},
-         galaxy-server, 
-         beam2, 
-         bowtie2 (>=2.1.0), 
-         bwa (>=0.6.1),
-         clustalw (>> 2.0),
-         cufflinks (>=1.2.1), 
-         cython (>=0.15.1), 
-         hyphy (>=2.1), 
-         lastz (>=1.02), 
-         macs14, 
-         meme,
-         natefoo-add-scores (>=0.1), 
-         natefoo-taxonomy (>=0.1), 
-         ncbi-blast+ (>=2.2.25), 
-         pass2 (>=0.1), 
-         perm (>=0.3.9),
-         picard-tools (>=1.46),
-         python-gnuplot,
-         python-numpy,
-         python-rpy, 
-         python-tables,
-         r-cran-prettyr,
-         r-cran-leaps,
-         r-cran-tcltk2,
-         r-cran-qvalue,
-         r-cran-rwave,
-         r-cran-wavethresh,
-         r-cran-waveslim,
-         r-cran-bitops,
-         samtools (>=0.1.18), 
-         seqan-apps, 
-         sift,
-         sputnik-mononucleotide (>=0.1), 
-         tophat (>= 1.3), 
-         velvet (>=1.1), 
-         weblogo (>=3.1)
-Description: Galaxy server with all recommended tools
- This meta-package installs the full Galaxy environment including many
- third party tools (see wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Dependencies).  
- Exceptions are currently:
-   LAJ - no source available
-   UCSC tools - license restricts redistribution outside academia
-
 Package: galaxy-server-pg-database
 Architecture: amd64
 Depends: galaxy-server  (= ${binary:Version}), python-psycopg2