[med-svn] [r-cran-ape] 01/01: Delete debian/ directory.

Dylan Aïssi bob.dybian-guest at moszumanska.debian.org
Sat May 3 15:30:50 UTC 2014 

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bob.dybian-guest pushed a commit to branch upstream
in repository r-cran-ape.

commit 2363007062dbb84894b5d7fe0f2d9482f0e2b4da
Author: Dylan Aïssi <bob.dybian at gmail.com>
Date:   Sat May 3 17:29:55 2014 +0200

    Delete debian/ directory.
---
 debian/changelog         |  6 ------
 debian/compat            |  1 -
 debian/control           | 35 -----------------------------------
 debian/copyright         | 34 ----------------------------------
 debian/rules             |  6 ------
 debian/source/format     |  1 -
 debian/upstream/metadata | 15 ---------------
 debian/watch             |  2 --
 8 files changed, 100 deletions(-)

diff --git a/debian/changelog b/debian/changelog
deleted file mode 100644
index b557ad4..0000000
--- a/debian/changelog
+++ /dev/null
@@ -1,6 +0,0 @@
-r-cran-ape (3.1-1-1) unstable; urgency=low
-
-  * Initial Debian Release. (Closes: #746208)
-
- -- Dylan Aïssi <bob.dybian at gmail.com>  Sun, 13 Apr 2014 17:00:00 +0200
- 
diff --git a/debian/compat b/debian/compat
deleted file mode 100644
index ec63514..0000000
--- a/debian/compat
+++ /dev/null
@@ -1 +0,0 @@
-9
diff --git a/debian/control b/debian/control
deleted file mode 100644
index f126581..0000000
--- a/debian/control
+++ /dev/null
@@ -1,35 +0,0 @@
-Source: r-cran-ape
-Section: gnu-r
-Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Dylan Aïssi <bob.dybian at gmail.com>
-Build-Depends: debhelper (>= 9.0.0),
- r-base-dev (>= 3.0.0),
- cdbs
-Standards-Version: 3.9.5
-Homepage: http://cran.r-project.org/web/packages/ape/index.html
-Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/r-cran-ape.git
-Vcs-Git: git://anonscm.debian.org/debian-med/r-cran-ape.git
-
-Package: r-cran-ape
-Architecture: any
-Depends: ${shlibs:Depends},
- ${misc:Depends},
- ${R:Depends},
- r-cran-nlme (>= 3.1.117),
- r-cran-lattice (>= 0.20-29)
-Description: GNU R package for Analyses of Phylogenetics and Evolution
- This package provides functions for reading, writing, plotting, and
- manipulating phylogenetic trees, analyses of comparative data in a
- phylogenetic framework, ancestral character analyses, analyses of
- diversification and macroevolution, computing distances from allelic
- and nucleotide data, reading and writing nucleotide sequences, and
- several tools such as Mantel's test, generalized skyline plots,
- graphical exploration of phylogenetic data (alex, trex, kronoviz),
- estimation of absolute evolutionary rates and clock-like trees using
- mean path lengths and penalized likelihood. Phylogeny estimation can
- be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and
- several methods handling incomplete distance matrices (NJ*, BIONJ*,
- MVR*, and the corresponding triangle method). Some functions call
- external applications (PhyML, Clustal, T-Coffee, Muscle) whose
- results are returned into R.
diff --git a/debian/copyright b/debian/copyright
deleted file mode 100644
index 04b38ff..0000000
--- a/debian/copyright
+++ /dev/null
@@ -1,34 +0,0 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
-Upstream-Name: ape
-Upstream-Contact: Emmanuel Paradis <Emmanuel.Paradis at ird.fr>
-Source: http://cran.r-project.org/src/contrib/
-
-Files: *
-Copyright: 2004-2014 Emmanuel Paradis, Ben Bolker, Julien Claude, Hoa Sien Cuong, Richard Desper, Benoit Durand, Julien Dutheil, Olivier Gascuel, Christoph Heibl, Daniel Lawson, Vincent Lefort, Pierre Legendre, Jim Lemon, Johan Nylander, Rainer Opgen-Rhein, Andrei-Alin Popescu, Klaus Schliep, Korbinian Strimmer, Damien de Vienne.
-License: GPL-2+
- This program is free software; you can redistribute it
- and/or modify it under the terms of the GNU General Public
- License as published by the Free Software Foundation; either
- version 2 of the License, or (at your option) any later
- version.
- .
- This program is distributed in the hope that it will be
- useful, but WITHOUT ANY WARRANTY; without even the implied
- warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- PURPOSE.  See the GNU General Public License for more
- details.
- .
- You should have received a copy of the GNU General Public
- License along with this package; if not, write to the Free
- Software Foundation, Inc., 51 Franklin St, Fifth Floor,
- Boston, MA  02110-1301 USA
- .
- On Debian systems, the full text of the GNU General Public
- License version 2 can be found in the file
- `/usr/share/common-licenses/GPL-2'.
-
-Files: debian/*
-Copyright: 2014 Dylan Aïssi <bob.dybian at gmail.com>
-License: GPL-2+
- Same as r-cran-ape itelf
-
diff --git a/debian/rules b/debian/rules
deleted file mode 100644
index 9c30f79..0000000
--- a/debian/rules
+++ /dev/null
@@ -1,6 +0,0 @@
-#!/usr/bin/make -f
-# -*- makefile -*-
-# debian/rules file for the Debian/GNU Linux r-cran-ape package
-
-include /usr/share/R/debian/r-cran.mk
-
diff --git a/debian/source/format b/debian/source/format
deleted file mode 100644
index 163aaf8..0000000
--- a/debian/source/format
+++ /dev/null
@@ -1 +0,0 @@
-3.0 (quilt)
diff --git a/debian/upstream/metadata b/debian/upstream/metadata
deleted file mode 100644
index 7533b3d..0000000
--- a/debian/upstream/metadata
+++ /dev/null
@@ -1,15 +0,0 @@
-Archive: CRAN
-Contact: Emmanuel Paradis <Emmanuel.Paradis at ird.fr>
-Name: ape
-Reference:
-  Author: Emmanuel Paradis, Julien Claude and Korbinian Strimmer
-  Title: "APE: Analyses of Phylogenetics and Evolution in R language"
-  Journal: Bioinformatics
-  Volume: 20
-  Number: 2
-  Pages: 289-290
-  Year: 2004
-  DOI: 10.1093/bioinformatics/btg412
-  URL: http://bioinformatics.oxfordjournals.org/content/20/2/289
-  eprint: http://bioinformatics.oxfordjournals.org/content/20/2/289.full.pdf+html
-
diff --git a/debian/watch b/debian/watch
deleted file mode 100644
index 1a24beb..0000000
--- a/debian/watch
+++ /dev/null
@@ -1,2 +0,0 @@
-version=3
-http://cran.r-project.org/src/contrib/ape_([-\d.]*)\.tar\.gz

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