[med-svn] r16913 - in trunk/packages/biojava3/tags: . 3.0.7+dfsg-2/debian

Olivier Sallou osallou at moszumanska.debian.org
Mon May 12 07:39:09 UTC 2014


Author: osallou
Date: 2014-05-12 07:39:09 +0000 (Mon, 12 May 2014)
New Revision: 16913

Added:
   trunk/packages/biojava3/tags/3.0.7+dfsg-2/
   trunk/packages/biojava3/tags/3.0.7+dfsg-2/debian/build.xml
   trunk/packages/biojava3/tags/3.0.7+dfsg-2/debian/changelog
   trunk/packages/biojava3/tags/3.0.7+dfsg-2/debian/control
Removed:
   trunk/packages/biojava3/tags/3.0.7+dfsg-2/debian/build.xml
   trunk/packages/biojava3/tags/3.0.7+dfsg-2/debian/changelog
   trunk/packages/biojava3/tags/3.0.7+dfsg-2/debian/control
Log:
[svn-buildpackage] Tagging biojava3-live 3.0.7+dfsg-2

Deleted: trunk/packages/biojava3/tags/3.0.7+dfsg-2/debian/build.xml
===================================================================
--- trunk/packages/biojava3/trunk/debian/build.xml	2014-05-11 12:17:19 UTC (rev 16911)
+++ trunk/packages/biojava3/tags/3.0.7+dfsg-2/debian/build.xml	2014-05-12 07:39:09 UTC (rev 16913)
@@ -1,118 +0,0 @@
-<?xml  version="1.0" ?>
-<project name="BJLIB" default="jar" basedir=".">
-	<!-- Directory structure -->
-	<property name="build.dir" location="../build/BJLIB"/>
-        <property name="test.dir" location="../buildtest/BJLIB"/>
-	<property name="dist.dir" location="../dist"/>
-	<property name="src.dir" location="src/main/java"/>
-        <property name="resources.dir" location="src/main/resources"/>
-        <property name="test.src.dir" location="src/test/java"/>
-        <property name="test.resources.dir" location="src/test/resources"/>
-	<property name="lib.dir" location="/usr/share/java"/>
-        <property name="docs.dir" location="../javadoc"/>
-	<property name="docs.lib.dir" location="../doc/BJLIB"/>
-	<property name="class.dir" location="${build.dir}/classes"/>
-        <property name="test.class.dir" location="${test.dir}/classes"/>
-	
-	<property name="project.name" value="biojava"/>
-	<property name="debug" value="true"/>
-	<property name="optimized" value="true"/>
-	<property name="project.version" value="1.8.2"/>
-	<property environment="env"/>
-	<property name="project.jarfile.name" value="BJLIB.jar"/>	
-	
-	<property name="class.path" value="${lib.dir}/commons-logging.jar ${lib.dir}/commons-cli.jar ${lib.dir}/commons-collections.jar ${lib.dir}/commons-dbcp.jar ${lib.dir}/junit4.jar ${lib.dir}/commons-pool.jar ${lib.dir}/guava.jar ${lib.dir}/jgrapht0.8.jar ${lib.dir}/Jmol.jar /usr/share/icedtea-web/netx.jar ${lib.dir}/hamcrest.jar ${lib.dir}/json_simple.jar ${lib.dir}/commons-codec.jar ${lib.dir}/itext5.jar ${lib.dir}/Jmol.jar ${lib.dir}/log4j-1.2.jar"/>
-								
-	<path id="compile.classpath">
-                        <fileset dir="${lib.dir}">
-				<include name="commons-cli.jar"/>
-				<include name="commons-collections.jar"/>
-				<include name="commons-dbcp.jar"/>
-				<include name="commons-logging.jar"/>
-				<include name="commons-pool.jar"/>
-				<include name="commons-codec.jar"/>
-				<include name="itext5.jar"/>
-				<include name="Jmol.jar"/>
-				<include name="junit4.jar"/>
-				<include name="guava.jar"/>
-				<include name="jgrapht0.8.jar"/>
-				<include name="JmolApplet.jar"/>
-				<include name="hamcrest.jar"/>
-				<include name="json_simple.jar"/>
-				<include name="log4j-1.2.jar"/>
-			</fileset>
-			<fileset dir="${dist.dir}">
-				<include name="*.jar"/>
-			</fileset>
-                        <fileset dir="/usr/share/icedtea-web">
-                                <include name="netx.jar"/>
-                        </fileset>
-	</path>
-	
-	
-	<target name="clean">
-		<echo level="info">Cleaning build directories</echo>
-		<delete verbose="true" includeEmptyDirs="true">
-			<fileset dir="${build.dir}" includes="**"/>
-			<fileset dir="${dist.dir}" includes="${project.name}*.jar"/>
-		</delete>
-	</target>
-	
-	<target name="javadocs">
-                <mkdir dir="${docs.dir}"/>
-		<mkdir dir="${docs.lib.dir}"/>
-		<javadoc destdir="${docs.lib.dir}" sourcepath="${src.dir}" packagenames="org.*">
-			<link href="http://java.sun.com/j2se/1.6.0/docs/api/"/>
-		</javadoc>
-	</target>
-	
-	<target name="compile">
-		<mkdir dir="${class.dir}"/>
-		<mkdir dir="${dist.dir}"/>
-		<javac srcdir="${src.dir}" destdir="${class.dir}" classpathref="compile.classpath" debug="${debug}" optimize="${optimized}" nowarn="true" source="1.6" target="1.6">
-		</javac>
-                <copy todir="${class.dir}" failonerror="false">
-                  <fileset dir="${resources.dir}"/>
-                </copy>
-	</target>
-
-        <target name="compile-test">
-                <mkdir dir="${test.class.dir}"/>
-                <javac srcdir="${test.src.dir}" destdir="${test.class.dir}" classpathref="compile.classpath" debug="${debug}" optimize="${optimized}" nowarn="true">
-                </javac>
-                <copy todir="${test.class.dir}" failonerror="false">
-                  <fileset dir="${test.resources.dir}"/>
-                </copy>
-                <copy todir="${test.class.dir}" failonerror="false">
-                  <fileset dir="${src.dir}"/>
-                </copy>
-        </target>
-
-  <path id="test.classpath">
-     <path refid="compile.classpath"/>
-     <pathelement location="${test.class.dir}" />
-  </path>
-
-  <target name="test" depends="compile-test">
-    <junit haltonfailure="yes" printsummary="yes" fork="true">
-      <classpath refid="test.classpath"/>
-      <formatter type="plain" usefile="false" />
-      <batchtest>
-        <fileset dir="${test.class.dir}" includes="**/*Test.class" excludes="**/Abstract*.class" />
-      </batchtest>
-    </junit>
-  </target>
-	
-	<target name="jar" depends="compile">
-		<jar destfile="${dist.dir}/${project.jarfile.name}"  basedir="${class.dir}" >
-		 <manifest>
-		    <attribute name="Built-By" value="Debian-Med team"/>
-	            <attribute name="Class-Path" value="${class.path}"/>
-		      <attribute name="Specification-Title" value="BioJava"/>
-		      <attribute name="Specification-Version" value="${project.version}"/>
-		  </manifest>
-		</jar>
-	</target>
-	
-</project>
-

Copied: trunk/packages/biojava3/tags/3.0.7+dfsg-2/debian/build.xml (from rev 16912, trunk/packages/biojava3/trunk/debian/build.xml)
===================================================================
--- trunk/packages/biojava3/tags/3.0.7+dfsg-2/debian/build.xml	                        (rev 0)
+++ trunk/packages/biojava3/tags/3.0.7+dfsg-2/debian/build.xml	2014-05-12 07:39:09 UTC (rev 16913)
@@ -0,0 +1,118 @@
+<?xml  version="1.0" ?>
+<project name="BJLIB" default="jar" basedir=".">
+	<!-- Directory structure -->
+	<property name="build.dir" location="../build/BJLIB"/>
+        <property name="test.dir" location="../buildtest/BJLIB"/>
+	<property name="dist.dir" location="../dist"/>
+	<property name="src.dir" location="src/main/java"/>
+        <property name="resources.dir" location="src/main/resources"/>
+        <property name="test.src.dir" location="src/test/java"/>
+        <property name="test.resources.dir" location="src/test/resources"/>
+	<property name="lib.dir" location="/usr/share/java"/>
+        <property name="docs.dir" location="../javadoc"/>
+	<property name="docs.lib.dir" location="../doc/BJLIB"/>
+	<property name="class.dir" location="${build.dir}/classes"/>
+        <property name="test.class.dir" location="${test.dir}/classes"/>
+	
+	<property name="project.name" value="biojava"/>
+	<property name="debug" value="true"/>
+	<property name="optimized" value="true"/>
+	<property name="project.version" value="1.8.2"/>
+	<property environment="env"/>
+	<property name="project.jarfile.name" value="BJLIB.jar"/>	
+	
+	<property name="class.path" value="${lib.dir}/commons-logging.jar ${lib.dir}/commons-cli.jar ${lib.dir}/commons-collections.jar ${lib.dir}/commons-dbcp.jar ${lib.dir}/junit4.jar ${lib.dir}/commons-pool.jar ${lib.dir}/guava.jar ${lib.dir}/jgrapht0.8.jar ${lib.dir}/Jmol.jar /usr/share/icedtea-web/netx.jar ${lib.dir}/hamcrest.jar ${lib.dir}/json_simple.jar ${lib.dir}/commons-codec.jar ${lib.dir}/itext5.jar ${lib.dir}/Jmol.jar ${lib.dir}/log4j-1.2.jar ${lib.dir}/json-simple.jar"/>
+								
+	<path id="compile.classpath">
+                        <fileset dir="${lib.dir}">
+				<include name="commons-cli.jar"/>
+				<include name="commons-collections.jar"/>
+				<include name="commons-dbcp.jar"/>
+				<include name="commons-logging.jar"/>
+				<include name="commons-pool.jar"/>
+				<include name="commons-codec.jar"/>
+				<include name="itext5.jar"/>
+				<include name="Jmol.jar"/>
+				<include name="junit4.jar"/>
+				<include name="guava.jar"/>
+				<include name="jgrapht0.8.jar"/>
+				<include name="JmolApplet.jar"/>
+				<include name="hamcrest.jar"/>
+				<include name="json-simple.jar"/>
+				<include name="log4j-1.2.jar"/>
+			</fileset>
+			<fileset dir="${dist.dir}">
+				<include name="*.jar"/>
+			</fileset>
+                        <fileset dir="/usr/share/icedtea-web">
+                                <include name="netx.jar"/>
+                        </fileset>
+	</path>
+	
+	
+	<target name="clean">
+		<echo level="info">Cleaning build directories</echo>
+		<delete verbose="true" includeEmptyDirs="true">
+			<fileset dir="${build.dir}" includes="**"/>
+			<fileset dir="${dist.dir}" includes="${project.name}*.jar"/>
+		</delete>
+	</target>
+	
+	<target name="javadocs">
+                <mkdir dir="${docs.dir}"/>
+		<mkdir dir="${docs.lib.dir}"/>
+		<javadoc destdir="${docs.lib.dir}" sourcepath="${src.dir}" packagenames="org.*">
+			<link href="http://java.sun.com/j2se/1.6.0/docs/api/"/>
+		</javadoc>
+	</target>
+	
+	<target name="compile">
+		<mkdir dir="${class.dir}"/>
+		<mkdir dir="${dist.dir}"/>
+		<javac srcdir="${src.dir}" destdir="${class.dir}" classpathref="compile.classpath" debug="${debug}" optimize="${optimized}" nowarn="true" source="1.6" target="1.6">
+		</javac>
+                <copy todir="${class.dir}" failonerror="false">
+                  <fileset dir="${resources.dir}"/>
+                </copy>
+	</target>
+
+        <target name="compile-test">
+                <mkdir dir="${test.class.dir}"/>
+                <javac srcdir="${test.src.dir}" destdir="${test.class.dir}" classpathref="compile.classpath" debug="${debug}" optimize="${optimized}" nowarn="true">
+                </javac>
+                <copy todir="${test.class.dir}" failonerror="false">
+                  <fileset dir="${test.resources.dir}"/>
+                </copy>
+                <copy todir="${test.class.dir}" failonerror="false">
+                  <fileset dir="${src.dir}"/>
+                </copy>
+        </target>
+
+  <path id="test.classpath">
+     <path refid="compile.classpath"/>
+     <pathelement location="${test.class.dir}" />
+  </path>
+
+  <target name="test" depends="compile-test">
+    <junit haltonfailure="yes" printsummary="yes" fork="true">
+      <classpath refid="test.classpath"/>
+      <formatter type="plain" usefile="false" />
+      <batchtest>
+        <fileset dir="${test.class.dir}" includes="**/*Test.class" excludes="**/Abstract*.class" />
+      </batchtest>
+    </junit>
+  </target>
+	
+	<target name="jar" depends="compile">
+		<jar destfile="${dist.dir}/${project.jarfile.name}"  basedir="${class.dir}" >
+		 <manifest>
+		    <attribute name="Built-By" value="Debian-Med team"/>
+	            <attribute name="Class-Path" value="${class.path}"/>
+		      <attribute name="Specification-Title" value="BioJava"/>
+		      <attribute name="Specification-Version" value="${project.version}"/>
+		  </manifest>
+		</jar>
+	</target>
+	
+</project>
+

Deleted: trunk/packages/biojava3/tags/3.0.7+dfsg-2/debian/changelog
===================================================================
--- trunk/packages/biojava3/trunk/debian/changelog	2014-05-11 12:17:19 UTC (rev 16911)
+++ trunk/packages/biojava3/tags/3.0.7+dfsg-2/debian/changelog	2014-05-12 07:39:09 UTC (rev 16913)
@@ -1,44 +0,0 @@
-biojava3-live (3.0.7+dfsg-1) unstable; urgency=low
-
-  * New upstream release
-  * Use Standards 3.9.5
-   
-   [debian/watch]: use new upstream GitHub repository
-
- -- Olivier Sallou <osallou at debian.org>  Tue, 18 Jun 2013 14:40:39 +0200
-
-biojava3-live (3.0.5-3) unstable; urgency=low
-
-  * Fix issue wit itext5 >= 5.4.1 related to API change (Closes: #712359)
-  * debian/build.xml: fork junit tests
-
- -- Olivier Sallou <osallou at debian.org>  Tue, 18 Jun 2013 12:53:24 +0200
-
-biojava3-live (3.0.5-2) unstable; urgency=low
-
-  * Remove tests needing network access (Closes: #696947)
-
- -- Olivier Sallou <osallou at debian.org>  Thu, 03 Jan 2013 11:08:51 +0100
-
-biojava3-live (3.0.5-1) unstable; urgency=low
-
-  * New upstream release
-  * Use forester 1.005
-
- -- Olivier Sallou <osallou at debian.org>  Sun, 02 Dec 2012 22:35:09 +0100
-
-biojava3-live (3.0.4-2) unstable; urgency=low
-
-  [ Olivier Sallou ]
-  Patch from James Page <james.page at ubuntu.com> (Closes: #683513).
-  * Transition to use default java implementation:
-    - d/control: Use default-jdk (>= 1:1.6) instead of openjdk-6-jdk
-      for package build. 
-
- -- Olivier Sallou <osallou at debian.org>  Wed, 01 Aug 2012 15:45:32 +0200
-
-biojava3-live (3.0.4-1) unstable; urgency=low
-
-  * Initial release (Closes: #674265)
-
- -- Olivier Sallou <osallou at debian.org>  Wed, 23 May 2012 18:13:46 +0200

Copied: trunk/packages/biojava3/tags/3.0.7+dfsg-2/debian/changelog (from rev 16912, trunk/packages/biojava3/trunk/debian/changelog)
===================================================================
--- trunk/packages/biojava3/tags/3.0.7+dfsg-2/debian/changelog	                        (rev 0)
+++ trunk/packages/biojava3/tags/3.0.7+dfsg-2/debian/changelog	2014-05-12 07:39:09 UTC (rev 16913)
@@ -0,0 +1,50 @@
+biojava3-live (3.0.7+dfsg-2) unstable; urgency=medium
+
+  * d/build.xml, d/control: change deps jar file name(Closes: #747781).
+
+ -- Olivier Sallou <osallou at debian.org>  Mon, 12 May 2014 09:31:04 +0200
+
+biojava3-live (3.0.7+dfsg-1) unstable; urgency=low
+
+  * New upstream release
+  * Use Standards 3.9.5
+   
+   [debian/watch]: use new upstream GitHub repository
+
+ -- Olivier Sallou <osallou at debian.org>  Tue, 18 Jun 2013 14:40:39 +0200
+
+biojava3-live (3.0.5-3) unstable; urgency=low
+
+  * Fix issue wit itext5 >= 5.4.1 related to API change (Closes: #712359)
+  * debian/build.xml: fork junit tests
+
+ -- Olivier Sallou <osallou at debian.org>  Tue, 18 Jun 2013 12:53:24 +0200
+
+biojava3-live (3.0.5-2) unstable; urgency=low
+
+  * Remove tests needing network access (Closes: #696947)
+
+ -- Olivier Sallou <osallou at debian.org>  Thu, 03 Jan 2013 11:08:51 +0100
+
+biojava3-live (3.0.5-1) unstable; urgency=low
+
+  * New upstream release
+  * Use forester 1.005
+
+ -- Olivier Sallou <osallou at debian.org>  Sun, 02 Dec 2012 22:35:09 +0100
+
+biojava3-live (3.0.4-2) unstable; urgency=low
+
+  [ Olivier Sallou ]
+  Patch from James Page <james.page at ubuntu.com> (Closes: #683513).
+  * Transition to use default java implementation:
+    - d/control: Use default-jdk (>= 1:1.6) instead of openjdk-6-jdk
+      for package build. 
+
+ -- Olivier Sallou <osallou at debian.org>  Wed, 01 Aug 2012 15:45:32 +0200
+
+biojava3-live (3.0.4-1) unstable; urgency=low
+
+  * Initial release (Closes: #674265)
+
+ -- Olivier Sallou <osallou at debian.org>  Wed, 23 May 2012 18:13:46 +0200

Deleted: trunk/packages/biojava3/tags/3.0.7+dfsg-2/debian/control
===================================================================
--- trunk/packages/biojava3/trunk/debian/control	2014-05-11 12:17:19 UTC (rev 16911)
+++ trunk/packages/biojava3/tags/3.0.7+dfsg-2/debian/control	2014-05-12 07:39:09 UTC (rev 16913)
@@ -1,79 +0,0 @@
-Source: biojava3-live
-Section: java
-Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Olivier Sallou <osallou at debian.org>
-Build-Depends-Indep: libcommons-dbcp-java (>= 1.1), libhsqldb-java,
- libcommons-collections-java (>= 2.1), libcommons-pool-java (>= 1.1),
- libcommons-logging-java,
- libcommons-cli-java, libguava-java (>= 11.0.1),
- libcommons-codec-java, libitext5-java (>= 5.4.1), libjmol-java,
- default-jdk (>= 1:1.6), junit4,javahelper (>=0.25),
- ant-optional, icedtea-netx, libhamcrest-java, libjson-simple-java,
- liblog4j1.2-java
-Build-Depends: debhelper (>= 9), ant
-Standards-Version: 3.9.5
-Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/biojava3/trunk/
-Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/biojava3/trunk/
-Homepage: http://www.biojava.org
-
-Package: libbiojava3.0-java
-Architecture: all
-Depends: ${shlibs:Depends}, ${misc:Depends},
- libcommons-pool-java (>= 1.1),
- libcommons-collections-java (>= 2.1),
- libcommons-dbcp-java (>= 1.1),
- libcommons-logging-java,
- libhsqldb-java,
- libbytecode-java,
- icedtea-netx,
- libjson-simple-java,
- libcommons-codec-java,
- libitext5-java (>= 5.4.1),
- libjmol-java,
- liblog4j1.2-java
-Suggests: java-virtual-machine, libjgrapht-java, libbiojava3-java, libbiojava3-java-doc
-Description: Java API to biological data and applications (version 3)
- This package presents the Open Source Java API to biological databases
- and a series of mostly sequence-based algorithms.
- .
- BioJava is an open-source project dedicated to providing a Java framework
- for processing biological data. It includes objects for manipulating
- sequences, file parsers, server support, access to BioSQL
- and Ensembl databases, and powerful analysis and statistical routines
- including a dynamic programming toolkit.
-
-Package: libbiojava3-java
-Architecture: all
-Depends: libbiojava3.0-java, ${misc:Depends}
-Provides: libbiojava3-java
-Description: Java API to biological data and applications (default version)
- BioJava is an open-source project dedicated to providing a Java framework
- for processing biological data. It includes objects for manipulating
- sequences, file parsers, server support, access to BioSQL
- and Ensembl databases, and powerful analysis and statistical routines
- including a dynamic programming toolkit.
- .
- BioJava is provided by a vibrant community which meets annually at
- the Bioinformatics Open Source Conference (BOSC) that traditionally
- accompanies the Intelligent Systems in Molecular Biology (ISMB)
- meeting. Much like BioPerl, the employment of this library is valuable
- for everybody active in the field because of the many tricks of the
- trade one learns just by communicating on the mailing list.
- .
- This is a wrapper package which should enable smooth upgrades to new
- versions.
-
-Package: libbiojava3-java-doc
-Section: doc
-Architecture: all
-Depends: ${misc:Depends}
-Recommends: konqueror|html-browser
-Suggests: libbiojava3-java-demos, libbiojava3-java
-Description: [Biology] Documentation for BioJava
- BioJava is an open-source project dedicated to providing a Java framework
- for processing biological data.
- .
- This package contains the HTML documentation describing the API of BioJava
- which was generated automatically by JavaDoc.
-

Copied: trunk/packages/biojava3/tags/3.0.7+dfsg-2/debian/control (from rev 16912, trunk/packages/biojava3/trunk/debian/control)
===================================================================
--- trunk/packages/biojava3/tags/3.0.7+dfsg-2/debian/control	                        (rev 0)
+++ trunk/packages/biojava3/tags/3.0.7+dfsg-2/debian/control	2014-05-12 07:39:09 UTC (rev 16913)
@@ -0,0 +1,80 @@
+Source: biojava3-live
+Section: java
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Olivier Sallou <osallou at debian.org>
+Build-Depends-Indep: libcommons-dbcp-java (>= 1.1), libhsqldb-java,
+ libcommons-collections-java (>= 2.1), libcommons-pool-java (>= 1.1),
+ libcommons-logging-java,
+ libcommons-cli-java, libguava-java (>= 11.0.1),
+ libcommons-codec-java, libitext5-java (>= 5.4.1), libjmol-java,
+ default-jdk (>= 1:1.6), junit4,javahelper (>=0.25),
+ ant-optional, icedtea-netx, libhamcrest-java,
+ libjson-simple-java (>=1.1.1),
+ liblog4j1.2-java
+Build-Depends: debhelper (>= 9), ant
+Standards-Version: 3.9.5
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/biojava3/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/biojava3/trunk/
+Homepage: http://www.biojava.org
+
+Package: libbiojava3.0-java
+Architecture: all
+Depends: ${shlibs:Depends}, ${misc:Depends},
+ libcommons-pool-java (>= 1.1),
+ libcommons-collections-java (>= 2.1),
+ libcommons-dbcp-java (>= 1.1),
+ libcommons-logging-java,
+ libhsqldb-java,
+ libbytecode-java,
+ icedtea-netx,
+ libjson-simple-java,
+ libcommons-codec-java,
+ libitext5-java (>= 5.4.1),
+ libjmol-java,
+ liblog4j1.2-java
+Suggests: java-virtual-machine, libjgrapht-java, libbiojava3-java, libbiojava3-java-doc
+Description: Java API to biological data and applications (version 3)
+ This package presents the Open Source Java API to biological databases
+ and a series of mostly sequence-based algorithms.
+ .
+ BioJava is an open-source project dedicated to providing a Java framework
+ for processing biological data. It includes objects for manipulating
+ sequences, file parsers, server support, access to BioSQL
+ and Ensembl databases, and powerful analysis and statistical routines
+ including a dynamic programming toolkit.
+
+Package: libbiojava3-java
+Architecture: all
+Depends: libbiojava3.0-java, ${misc:Depends}
+Provides: libbiojava3-java
+Description: Java API to biological data and applications (default version)
+ BioJava is an open-source project dedicated to providing a Java framework
+ for processing biological data. It includes objects for manipulating
+ sequences, file parsers, server support, access to BioSQL
+ and Ensembl databases, and powerful analysis and statistical routines
+ including a dynamic programming toolkit.
+ .
+ BioJava is provided by a vibrant community which meets annually at
+ the Bioinformatics Open Source Conference (BOSC) that traditionally
+ accompanies the Intelligent Systems in Molecular Biology (ISMB)
+ meeting. Much like BioPerl, the employment of this library is valuable
+ for everybody active in the field because of the many tricks of the
+ trade one learns just by communicating on the mailing list.
+ .
+ This is a wrapper package which should enable smooth upgrades to new
+ versions.
+
+Package: libbiojava3-java-doc
+Section: doc
+Architecture: all
+Depends: ${misc:Depends}
+Recommends: konqueror|html-browser
+Suggests: libbiojava3-java-demos, libbiojava3-java
+Description: [Biology] Documentation for BioJava
+ BioJava is an open-source project dedicated to providing a Java framework
+ for processing biological data.
+ .
+ This package contains the HTML documentation describing the API of BioJava
+ which was generated automatically by JavaDoc.
+




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