[med-svn] [cufflinks] 02/04: Imported Upstream version 2.2.1
Alex Mestiashvili
malex-guest at moszumanska.debian.org
Fri May 16 21:04:57 UTC 2014
This is an automated email from the git hooks/post-receive script.
malex-guest pushed a commit to branch master
in repository cufflinks.
commit 55fd328442db7f395094e1cbe2ae842c8268dd6f
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date: Fri May 16 11:29:46 2014 +0200
Imported Upstream version 2.2.1
---
Makefile.in | 10 +-
config.h.in | 2 +-
configure | 8583 ++++++++++++++++++++++++++++----------------------
configure.ac | 2 +-
make_bin.sh | 6 +-
src/GBase.cpp | 8 +-
src/GFaSeqGet.h | 24 +
src/GStr.cpp | 29 +-
src/GStr.h | 20 +-
src/Makefile.in | 10 +-
src/abundances.cpp | 10 +-
src/common.cpp | 6 +-
src/common.h | 1 +
src/cuffdiff.cpp | 58 +-
src/cuffnorm.cpp | 113 +-
src/cuffquant.cpp | 2 +-
src/gff.cpp | 25 +-
src/gff.h | 12 +-
src/gff_utils.cpp | 14 +-
src/gtf_tracking.cpp | 112 +-
src/gtf_tracking.h | 17 +-
src/replicates.cpp | 4 +
22 files changed, 5154 insertions(+), 3914 deletions(-)
diff --git a/Makefile.in b/Makefile.in
index a9e8232..96c9e1a 100644
--- a/Makefile.in
+++ b/Makefile.in
@@ -109,6 +109,7 @@ ECHO_T = @ECHO_T@
EGREP = @EGREP@
EIGEN_CPPFLAGS = @EIGEN_CPPFLAGS@
EXEEXT = @EXEEXT@
+GREP = @GREP@
INSTALL_DATA = @INSTALL_DATA@
INSTALL_PROGRAM = @INSTALL_PROGRAM@
INSTALL_SCRIPT = @INSTALL_SCRIPT@
@@ -139,8 +140,6 @@ VERSION = @VERSION@
ZLIB = @ZLIB@
ac_ct_CC = @ac_ct_CC@
ac_ct_CXX = @ac_ct_CXX@
-ac_ct_RANLIB = @ac_ct_RANLIB@
-ac_ct_STRIP = @ac_ct_STRIP@
am__fastdepCC_FALSE = @am__fastdepCC_FALSE@
am__fastdepCC_TRUE = @am__fastdepCC_TRUE@
am__fastdepCXX_FALSE = @am__fastdepCXX_FALSE@
@@ -157,25 +156,32 @@ build_cpu = @build_cpu@
build_os = @build_os@
build_vendor = @build_vendor@
datadir = @datadir@
+datarootdir = @datarootdir@
+docdir = @docdir@
+dvidir = @dvidir@
exec_prefix = @exec_prefix@
host = @host@
host_alias = @host_alias@
host_cpu = @host_cpu@
host_os = @host_os@
host_vendor = @host_vendor@
+htmldir = @htmldir@
includedir = @includedir@
infodir = @infodir@
install_sh = @install_sh@
libdir = @libdir@
libexecdir = @libexecdir@
+localedir = @localedir@
localstatedir = @localstatedir@
mandir = @mandir@
mkdir_p = @mkdir_p@
oldincludedir = @oldincludedir@
+pdfdir = @pdfdir@
pkgpyexecdir = @pkgpyexecdir@
pkgpythondir = @pkgpythondir@
prefix = @prefix@
program_transform_name = @program_transform_name@
+psdir = @psdir@
pyexecdir = @pyexecdir@
pythondir = @pythondir@
sbindir = @sbindir@
diff --git a/config.h.in b/config.h.in
index 3fd2181..71a19ef 100644
--- a/config.h.in
+++ b/config.h.in
@@ -108,5 +108,5 @@
/* Define to `int' if <sys/types.h> does not define. */
#undef pid_t
-/* Define to `unsigned' if <sys/types.h> does not define. */
+/* Define to `unsigned int' if <sys/types.h> does not define. */
#undef size_t
diff --git a/configure b/configure
index e8c40f0..b9cb412 100755
--- a/configure
+++ b/configure
@@ -1,27 +1,84 @@
#! /bin/sh
# Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.59 for cufflinks 2.2.0.
+# Generated by GNU Autoconf 2.63 for cufflinks 2.2.1.
#
# Report bugs to <cole at cs.umd.edu>.
#
-# Copyright (C) 2003 Free Software Foundation, Inc.
+# Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001,
+# 2002, 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc.
# This configure script is free software; the Free Software Foundation
# gives unlimited permission to copy, distribute and modify it.
## --------------------- ##
## M4sh Initialization. ##
## --------------------- ##
-# Be Bourne compatible
+# Be more Bourne compatible
+DUALCASE=1; export DUALCASE # for MKS sh
if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
emulate sh
NULLCMD=:
- # Zsh 3.x and 4.x performs word splitting on ${1+"$@"}, which
+ # Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which
# is contrary to our usage. Disable this feature.
alias -g '${1+"$@"}'='"$@"'
-elif test -n "${BASH_VERSION+set}" && (set -o posix) >/dev/null 2>&1; then
- set -o posix
+ setopt NO_GLOB_SUBST
+else
+ case `(set -o) 2>/dev/null` in
+ *posix*) set -o posix ;;
+esac
+
+fi
+
+
+
+
+# PATH needs CR
+# Avoid depending upon Character Ranges.
+as_cr_letters='abcdefghijklmnopqrstuvwxyz'
+as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
+as_cr_Letters=$as_cr_letters$as_cr_LETTERS
+as_cr_digits='0123456789'
+as_cr_alnum=$as_cr_Letters$as_cr_digits
+
+as_nl='
+'
+export as_nl
+# Printing a long string crashes Solaris 7 /usr/bin/printf.
+as_echo='\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\'
+as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo
+as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo$as_echo
+if (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
+ as_echo='printf %s\n'
+ as_echo_n='printf %s'
+else
+ if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then
+ as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"'
+ as_echo_n='/usr/ucb/echo -n'
+ else
+ as_echo_body='eval expr "X$1" : "X\\(.*\\)"'
+ as_echo_n_body='eval
+ arg=$1;
+ case $arg in
+ *"$as_nl"*)
+ expr "X$arg" : "X\\(.*\\)$as_nl";
+ arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
+ esac;
+ expr "X$arg" : "X\\(.*\\)" | tr -d "$as_nl"
+ '
+ export as_echo_n_body
+ as_echo_n='sh -c $as_echo_n_body as_echo'
+ fi
+ export as_echo_body
+ as_echo='sh -c $as_echo_body as_echo'
+fi
+
+# The user is always right.
+if test "${PATH_SEPARATOR+set}" != set; then
+ PATH_SEPARATOR=:
+ (PATH='/bin;/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 && {
+ (PATH='/bin:/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 ||
+ PATH_SEPARATOR=';'
+ }
fi
-DUALCASE=1; export DUALCASE # for MKS sh
# Support unset when possible.
if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then
@@ -31,33 +88,60 @@ else
fi
+# IFS
+# We need space, tab and new line, in precisely that order. Quoting is
+# there to prevent editors from complaining about space-tab.
+# (If _AS_PATH_WALK were called with IFS unset, it would disable word
+# splitting by setting IFS to empty value.)
+IFS=" "" $as_nl"
+
+# Find who we are. Look in the path if we contain no directory separator.
+case $0 in
+ *[\\/]* ) as_myself=$0 ;;
+ *) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
+done
+IFS=$as_save_IFS
+
+ ;;
+esac
+# We did not find ourselves, most probably we were run as `sh COMMAND'
+# in which case we are not to be found in the path.
+if test "x$as_myself" = x; then
+ as_myself=$0
+fi
+if test ! -f "$as_myself"; then
+ $as_echo "$as_myself: error: cannot find myself; rerun with an absolute file name" >&2
+ { (exit 1); exit 1; }
+fi
+
# Work around bugs in pre-3.0 UWIN ksh.
-$as_unset ENV MAIL MAILPATH
+for as_var in ENV MAIL MAILPATH
+do ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
+done
PS1='$ '
PS2='> '
PS4='+ '
# NLS nuisances.
-for as_var in \
- LANG LANGUAGE LC_ADDRESS LC_ALL LC_COLLATE LC_CTYPE LC_IDENTIFICATION \
- LC_MEASUREMENT LC_MESSAGES LC_MONETARY LC_NAME LC_NUMERIC LC_PAPER \
- LC_TELEPHONE LC_TIME
-do
- if (set +x; test -z "`(eval $as_var=C; export $as_var) 2>&1`"); then
- eval $as_var=C; export $as_var
- else
- $as_unset $as_var
- fi
-done
+LC_ALL=C
+export LC_ALL
+LANGUAGE=C
+export LANGUAGE
# Required to use basename.
-if expr a : '\(a\)' >/dev/null 2>&1; then
+if expr a : '\(a\)' >/dev/null 2>&1 &&
+ test "X`expr 00001 : '.*\(...\)'`" = X001; then
as_expr=expr
else
as_expr=false
fi
-if (basename /) >/dev/null 2>&1 && test "X`basename / 2>&1`" = "X/"; then
+if (basename -- /) >/dev/null 2>&1 && test "X`basename -- / 2>&1`" = "X/"; then
as_basename=basename
else
as_basename=false
@@ -65,157 +149,391 @@ fi
# Name of the executable.
-as_me=`$as_basename "$0" ||
+as_me=`$as_basename -- "$0" ||
$as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \
X"$0" : 'X\(//\)$' \| \
- X"$0" : 'X\(/\)$' \| \
- . : '\(.\)' 2>/dev/null ||
-echo X/"$0" |
- sed '/^.*\/\([^/][^/]*\)\/*$/{ s//\1/; q; }
- /^X\/\(\/\/\)$/{ s//\1/; q; }
- /^X\/\(\/\).*/{ s//\1/; q; }
- s/.*/./; q'`
+ X"$0" : 'X\(/\)' \| . 2>/dev/null ||
+$as_echo X/"$0" |
+ sed '/^.*\/\([^/][^/]*\)\/*$/{
+ s//\1/
+ q
+ }
+ /^X\/\(\/\/\)$/{
+ s//\1/
+ q
+ }
+ /^X\/\(\/\).*/{
+ s//\1/
+ q
+ }
+ s/.*/./; q'`
+# CDPATH.
+$as_unset CDPATH
-# PATH needs CR, and LINENO needs CR and PATH.
-# Avoid depending upon Character Ranges.
-as_cr_letters='abcdefghijklmnopqrstuvwxyz'
-as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
-as_cr_Letters=$as_cr_letters$as_cr_LETTERS
-as_cr_digits='0123456789'
-as_cr_alnum=$as_cr_Letters$as_cr_digits
-# The user is always right.
-if test "${PATH_SEPARATOR+set}" != set; then
- echo "#! /bin/sh" >conf$$.sh
- echo "exit 0" >>conf$$.sh
- chmod +x conf$$.sh
- if (PATH="/nonexistent;."; conf$$.sh) >/dev/null 2>&1; then
- PATH_SEPARATOR=';'
- else
- PATH_SEPARATOR=:
- fi
- rm -f conf$$.sh
+if test "x$CONFIG_SHELL" = x; then
+ if (eval ":") 2>/dev/null; then
+ as_have_required=yes
+else
+ as_have_required=no
fi
+ if test $as_have_required = yes && (eval ":
+(as_func_return () {
+ (exit \$1)
+}
+as_func_success () {
+ as_func_return 0
+}
+as_func_failure () {
+ as_func_return 1
+}
+as_func_ret_success () {
+ return 0
+}
+as_func_ret_failure () {
+ return 1
+}
- as_lineno_1=$LINENO
- as_lineno_2=$LINENO
- as_lineno_3=`(expr $as_lineno_1 + 1) 2>/dev/null`
- test "x$as_lineno_1" != "x$as_lineno_2" &&
- test "x$as_lineno_3" = "x$as_lineno_2" || {
- # Find who we are. Look in the path if we contain no path at all
- # relative or not.
- case $0 in
- *[\\/]* ) as_myself=$0 ;;
- *) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-for as_dir in $PATH
-do
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
-done
+exitcode=0
+if as_func_success; then
+ :
+else
+ exitcode=1
+ echo as_func_success failed.
+fi
- ;;
- esac
- # We did not find ourselves, most probably we were run as `sh COMMAND'
- # in which case we are not to be found in the path.
- if test "x$as_myself" = x; then
- as_myself=$0
- fi
- if test ! -f "$as_myself"; then
- { echo "$as_me: error: cannot find myself; rerun with an absolute path" >&2
- { (exit 1); exit 1; }; }
- fi
- case $CONFIG_SHELL in
- '')
+if as_func_failure; then
+ exitcode=1
+ echo as_func_failure succeeded.
+fi
+
+if as_func_ret_success; then
+ :
+else
+ exitcode=1
+ echo as_func_ret_success failed.
+fi
+
+if as_func_ret_failure; then
+ exitcode=1
+ echo as_func_ret_failure succeeded.
+fi
+
+if ( set x; as_func_ret_success y && test x = \"\$1\" ); then
+ :
+else
+ exitcode=1
+ echo positional parameters were not saved.
+fi
+
+test \$exitcode = 0) || { (exit 1); exit 1; }
+
+(
+ as_lineno_1=\$LINENO
+ as_lineno_2=\$LINENO
+ test \"x\$as_lineno_1\" != \"x\$as_lineno_2\" &&
+ test \"x\`expr \$as_lineno_1 + 1\`\" = \"x\$as_lineno_2\") || { (exit 1); exit 1; }
+") 2> /dev/null; then
+ :
+else
+ as_candidate_shells=
as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in /bin$PATH_SEPARATOR/usr/bin$PATH_SEPARATOR$PATH
do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
- for as_base in sh bash ksh sh5; do
- case $as_dir in
+ case $as_dir in
/*)
- if ("$as_dir/$as_base" -c '
+ for as_base in sh bash ksh sh5; do
+ as_candidate_shells="$as_candidate_shells $as_dir/$as_base"
+ done;;
+ esac
+done
+IFS=$as_save_IFS
+
+
+ for as_shell in $as_candidate_shells $SHELL; do
+ # Try only shells that exist, to save several forks.
+ if { test -f "$as_shell" || test -f "$as_shell.exe"; } &&
+ { ("$as_shell") 2> /dev/null <<\_ASEOF
+if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
+ emulate sh
+ NULLCMD=:
+ # Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which
+ # is contrary to our usage. Disable this feature.
+ alias -g '${1+"$@"}'='"$@"'
+ setopt NO_GLOB_SUBST
+else
+ case `(set -o) 2>/dev/null` in
+ *posix*) set -o posix ;;
+esac
+
+fi
+
+
+:
+_ASEOF
+}; then
+ CONFIG_SHELL=$as_shell
+ as_have_required=yes
+ if { "$as_shell" 2> /dev/null <<\_ASEOF
+if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
+ emulate sh
+ NULLCMD=:
+ # Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which
+ # is contrary to our usage. Disable this feature.
+ alias -g '${1+"$@"}'='"$@"'
+ setopt NO_GLOB_SUBST
+else
+ case `(set -o) 2>/dev/null` in
+ *posix*) set -o posix ;;
+esac
+
+fi
+
+
+:
+(as_func_return () {
+ (exit $1)
+}
+as_func_success () {
+ as_func_return 0
+}
+as_func_failure () {
+ as_func_return 1
+}
+as_func_ret_success () {
+ return 0
+}
+as_func_ret_failure () {
+ return 1
+}
+
+exitcode=0
+if as_func_success; then
+ :
+else
+ exitcode=1
+ echo as_func_success failed.
+fi
+
+if as_func_failure; then
+ exitcode=1
+ echo as_func_failure succeeded.
+fi
+
+if as_func_ret_success; then
+ :
+else
+ exitcode=1
+ echo as_func_ret_success failed.
+fi
+
+if as_func_ret_failure; then
+ exitcode=1
+ echo as_func_ret_failure succeeded.
+fi
+
+if ( set x; as_func_ret_success y && test x = "$1" ); then
+ :
+else
+ exitcode=1
+ echo positional parameters were not saved.
+fi
+
+test $exitcode = 0) || { (exit 1); exit 1; }
+
+(
as_lineno_1=$LINENO
as_lineno_2=$LINENO
- as_lineno_3=`(expr $as_lineno_1 + 1) 2>/dev/null`
test "x$as_lineno_1" != "x$as_lineno_2" &&
- test "x$as_lineno_3" = "x$as_lineno_2" ') 2>/dev/null; then
- $as_unset BASH_ENV || test "${BASH_ENV+set}" != set || { BASH_ENV=; export BASH_ENV; }
- $as_unset ENV || test "${ENV+set}" != set || { ENV=; export ENV; }
- CONFIG_SHELL=$as_dir/$as_base
- export CONFIG_SHELL
- exec "$CONFIG_SHELL" "$0" ${1+"$@"}
- fi;;
- esac
- done
-done
-;;
- esac
+ test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2") || { (exit 1); exit 1; }
+
+_ASEOF
+}; then
+ break
+fi
+
+fi
+
+ done
+
+ if test "x$CONFIG_SHELL" != x; then
+ for as_var in BASH_ENV ENV
+ do ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
+ done
+ export CONFIG_SHELL
+ exec "$CONFIG_SHELL" "$as_myself" ${1+"$@"}
+fi
+
+
+ if test $as_have_required = no; then
+ echo This script requires a shell more modern than all the
+ echo shells that I found on your system. Please install a
+ echo modern shell, or manually run the script under such a
+ echo shell if you do have one.
+ { (exit 1); exit 1; }
+fi
+
+
+fi
+
+fi
+
+
+
+(eval "as_func_return () {
+ (exit \$1)
+}
+as_func_success () {
+ as_func_return 0
+}
+as_func_failure () {
+ as_func_return 1
+}
+as_func_ret_success () {
+ return 0
+}
+as_func_ret_failure () {
+ return 1
+}
+
+exitcode=0
+if as_func_success; then
+ :
+else
+ exitcode=1
+ echo as_func_success failed.
+fi
+
+if as_func_failure; then
+ exitcode=1
+ echo as_func_failure succeeded.
+fi
+
+if as_func_ret_success; then
+ :
+else
+ exitcode=1
+ echo as_func_ret_success failed.
+fi
+
+if as_func_ret_failure; then
+ exitcode=1
+ echo as_func_ret_failure succeeded.
+fi
+
+if ( set x; as_func_ret_success y && test x = \"\$1\" ); then
+ :
+else
+ exitcode=1
+ echo positional parameters were not saved.
+fi
+
+test \$exitcode = 0") || {
+ echo No shell found that supports shell functions.
+ echo Please tell bug-autoconf at gnu.org about your system,
+ echo including any error possibly output before this message.
+ echo This can help us improve future autoconf versions.
+ echo Configuration will now proceed without shell functions.
+}
+
+
+
+ as_lineno_1=$LINENO
+ as_lineno_2=$LINENO
+ test "x$as_lineno_1" != "x$as_lineno_2" &&
+ test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2" || {
# Create $as_me.lineno as a copy of $as_myself, but with $LINENO
# uniformly replaced by the line number. The first 'sed' inserts a
- # line-number line before each line; the second 'sed' does the real
- # work. The second script uses 'N' to pair each line-number line
- # with the numbered line, and appends trailing '-' during
- # substitution so that $LINENO is not a special case at line end.
+ # line-number line after each line using $LINENO; the second 'sed'
+ # does the real work. The second script uses 'N' to pair each
+ # line-number line with the line containing $LINENO, and appends
+ # trailing '-' during substitution so that $LINENO is not a special
+ # case at line end.
# (Raja R Harinath suggested sed '=', and Paul Eggert wrote the
- # second 'sed' script. Blame Lee E. McMahon for sed's syntax. :-)
- sed '=' <$as_myself |
+ # scripts with optimization help from Paolo Bonzini. Blame Lee
+ # E. McMahon (1931-1989) for sed's syntax. :-)
+ sed -n '
+ p
+ /[$]LINENO/=
+ ' <$as_myself |
sed '
+ s/[$]LINENO.*/&-/
+ t lineno
+ b
+ :lineno
N
- s,$,-,
- : loop
- s,^\(['$as_cr_digits']*\)\(.*\)[$]LINENO\([^'$as_cr_alnum'_]\),\1\2\1\3,
+ :loop
+ s/[$]LINENO\([^'$as_cr_alnum'_].*\n\)\(.*\)/\2\1\2/
t loop
- s,-$,,
- s,^['$as_cr_digits']*\n,,
+ s/-\n.*//
' >$as_me.lineno &&
- chmod +x $as_me.lineno ||
- { echo "$as_me: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&2
+ chmod +x "$as_me.lineno" ||
+ { $as_echo "$as_me: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&2
{ (exit 1); exit 1; }; }
# Don't try to exec as it changes $[0], causing all sort of problems
# (the dirname of $[0] is not the place where we might find the
- # original and so on. Autoconf is especially sensible to this).
- . ./$as_me.lineno
+ # original and so on. Autoconf is especially sensitive to this).
+ . "./$as_me.lineno"
# Exit status is that of the last command.
exit
}
-case `echo "testing\c"; echo 1,2,3`,`echo -n testing; echo 1,2,3` in
- *c*,-n*) ECHO_N= ECHO_C='
-' ECHO_T=' ' ;;
- *c*,* ) ECHO_N=-n ECHO_C= ECHO_T= ;;
- *) ECHO_N= ECHO_C='\c' ECHO_T= ;;
-esac
+if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then
+ as_dirname=dirname
+else
+ as_dirname=false
+fi
-if expr a : '\(a\)' >/dev/null 2>&1; then
+ECHO_C= ECHO_N= ECHO_T=
+case `echo -n x` in
+-n*)
+ case `echo 'x\c'` in
+ *c*) ECHO_T=' ';; # ECHO_T is single tab character.
+ *) ECHO_C='\c';;
+ esac;;
+*)
+ ECHO_N='-n';;
+esac
+if expr a : '\(a\)' >/dev/null 2>&1 &&
+ test "X`expr 00001 : '.*\(...\)'`" = X001; then
as_expr=expr
else
as_expr=false
fi
rm -f conf$$ conf$$.exe conf$$.file
-echo >conf$$.file
-if ln -s conf$$.file conf$$ 2>/dev/null; then
- # We could just check for DJGPP; but this test a) works b) is more generic
- # and c) will remain valid once DJGPP supports symlinks (DJGPP 2.04).
- if test -f conf$$.exe; then
- # Don't use ln at all; we don't have any links
- as_ln_s='cp -p'
- else
+if test -d conf$$.dir; then
+ rm -f conf$$.dir/conf$$.file
+else
+ rm -f conf$$.dir
+ mkdir conf$$.dir 2>/dev/null
+fi
+if (echo >conf$$.file) 2>/dev/null; then
+ if ln -s conf$$.file conf$$ 2>/dev/null; then
as_ln_s='ln -s'
+ # ... but there are two gotchas:
+ # 1) On MSYS, both `ln -s file dir' and `ln file dir' fail.
+ # 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable.
+ # In both cases, we have to default to `cp -p'.
+ ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe ||
+ as_ln_s='cp -p'
+ elif ln conf$$.file conf$$ 2>/dev/null; then
+ as_ln_s=ln
+ else
+ as_ln_s='cp -p'
fi
-elif ln conf$$.file conf$$ 2>/dev/null; then
- as_ln_s=ln
else
as_ln_s='cp -p'
fi
-rm -f conf$$ conf$$.exe conf$$.file
+rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
+rmdir conf$$.dir 2>/dev/null
if mkdir -p . 2>/dev/null; then
as_mkdir_p=:
@@ -224,7 +542,28 @@ else
as_mkdir_p=false
fi
-as_executable_p="test -f"
+if test -x / >/dev/null 2>&1; then
+ as_test_x='test -x'
+else
+ if ls -dL / >/dev/null 2>&1; then
+ as_ls_L_option=L
+ else
+ as_ls_L_option=
+ fi
+ as_test_x='
+ eval sh -c '\''
+ if test -d "$1"; then
+ test -d "$1/.";
+ else
+ case $1 in
+ -*)set "./$1";;
+ esac;
+ case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in
+ ???[sx]*):;;*)false;;esac;fi
+ '\'' sh
+ '
+fi
+as_executable_p=$as_test_x
# Sed expression to map a string onto a valid CPP name.
as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
@@ -233,90 +572,223 @@ as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
as_tr_sh="eval sed 'y%*+%pp%;s%[^_$as_cr_alnum]%_%g'"
-# IFS
-# We need space, tab and new line, in precisely that order.
-as_nl='
-'
-IFS=" $as_nl"
-
-# CDPATH.
-$as_unset CDPATH
+exec 7<&0 </dev/null 6>&1
# Name of the host.
# hostname on some systems (SVR3.2, Linux) returns a bogus exit status,
# so uname gets run too.
ac_hostname=`(hostname || uname -n) 2>/dev/null | sed 1q`
-exec 6>&1
-
#
# Initializations.
#
ac_default_prefix=/usr/local
+ac_clean_files=
ac_config_libobj_dir=.
+LIBOBJS=
cross_compiling=no
subdirs=
MFLAGS=
MAKEFLAGS=
SHELL=${CONFIG_SHELL-/bin/sh}
-# Maximum number of lines to put in a shell here document.
-# This variable seems obsolete. It should probably be removed, and
-# only ac_max_sed_lines should be used.
-: ${ac_max_here_lines=38}
-
# Identity of this package.
PACKAGE_NAME='cufflinks'
PACKAGE_TARNAME='cufflinks'
-PACKAGE_VERSION='2.2.0'
-PACKAGE_STRING='cufflinks 2.2.0'
+PACKAGE_VERSION='2.2.1'
+PACKAGE_STRING='cufflinks 2.2.1'
PACKAGE_BUGREPORT='cole at cs.umd.edu'
ac_unique_file="config.h.in"
# Factoring default headers for most tests.
ac_includes_default="\
#include <stdio.h>
-#if HAVE_SYS_TYPES_H
+#ifdef HAVE_SYS_TYPES_H
# include <sys/types.h>
#endif
-#if HAVE_SYS_STAT_H
+#ifdef HAVE_SYS_STAT_H
# include <sys/stat.h>
#endif
-#if STDC_HEADERS
+#ifdef STDC_HEADERS
# include <stdlib.h>
# include <stddef.h>
#else
-# if HAVE_STDLIB_H
+# ifdef HAVE_STDLIB_H
# include <stdlib.h>
# endif
#endif
-#if HAVE_STRING_H
-# if !STDC_HEADERS && HAVE_MEMORY_H
+#ifdef HAVE_STRING_H
+# if !defined STDC_HEADERS && defined HAVE_MEMORY_H
# include <memory.h>
# endif
# include <string.h>
#endif
-#if HAVE_STRINGS_H
+#ifdef HAVE_STRINGS_H
# include <strings.h>
#endif
-#if HAVE_INTTYPES_H
+#ifdef HAVE_INTTYPES_H
# include <inttypes.h>
-#else
-# if HAVE_STDINT_H
-# include <stdint.h>
-# endif
#endif
-#if HAVE_UNISTD_H
+#ifdef HAVE_STDINT_H
+# include <stdint.h>
+#endif
+#ifdef HAVE_UNISTD_H
# include <unistd.h>
#endif"
-ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA CYGPATH_W PACKAGE VERSION ACLOCAL AUTOCONF AUTOMAKE AUTOHEADER MAKEINFO install_sh STRIP ac_ct_STRIP INS [...]
+ac_subst_vars='LTLIBOBJS
+LIBOBJS
+host_os
+host_vendor
+host_cpu
+host
+EIGEN_CPPFLAGS
+ZLIB
+EGREP
+GREP
+CPP
+BOOST_THREAD_LIB
+BOOST_SERIALIZATION_LIB
+BOOST_SYSTEM_LIB
+build_os
+build_vendor
+build_cpu
+build
+BAM_LIB
+BAM_LDFLAGS
+BAM_CPPFLAGS
+BOOST_LDFLAGS
+BOOST_CPPFLAGS
+pkgpyexecdir
+pyexecdir
+pkgpythondir
+pythondir
+PYTHON_PLATFORM
+PYTHON_EXEC_PREFIX
+PYTHON_PREFIX
+PYTHON_VERSION
+RANLIB
+am__fastdepCC_FALSE
+am__fastdepCC_TRUE
+CCDEPMODE
+ac_ct_CC
+CFLAGS
+CC
+am__fastdepCXX_FALSE
+am__fastdepCXX_TRUE
+CXXDEPMODE
+AMDEPBACKSLASH
+AMDEP_FALSE
+AMDEP_TRUE
+am__quote
+am__include
+DEPDIR
+OBJEXT
+EXEEXT
+ac_ct_CXX
+CPPFLAGS
+LDFLAGS
+CXXFLAGS
+CXX
+PYTHON
+am__untar
+am__tar
+AMTAR
+am__leading_dot
+SET_MAKE
+AWK
+mkdir_p
+INSTALL_STRIP_PROGRAM
+STRIP
+install_sh
+MAKEINFO
+AUTOHEADER
+AUTOMAKE
+AUTOCONF
+ACLOCAL
+VERSION
+PACKAGE
+CYGPATH_W
+INSTALL_DATA
+INSTALL_SCRIPT
+INSTALL_PROGRAM
+target_alias
+host_alias
+build_alias
+LIBS
+ECHO_T
+ECHO_N
+ECHO_C
+DEFS
+mandir
+localedir
+libdir
+psdir
+pdfdir
+dvidir
+htmldir
+infodir
+docdir
+oldincludedir
+includedir
+localstatedir
+sharedstatedir
+sysconfdir
+datadir
+datarootdir
+libexecdir
+sbindir
+bindir
+program_transform_name
+prefix
+exec_prefix
+PACKAGE_BUGREPORT
+PACKAGE_STRING
+PACKAGE_VERSION
+PACKAGE_TARNAME
+PACKAGE_NAME
+PATH_SEPARATOR
+SHELL'
ac_subst_files=''
+ac_user_opts='
+enable_option_checking
+enable_dependency_tracking
+with_boost
+with_boost_libdir
+with_bam
+with_bam_libdir
+with_boost_system
+with_boost_serialization
+with_boost_thread
+with_zlib
+with_eigen
+enable_vectorize
+enable_intel64
+enable_debug
+enable_optim
+enable_profiling
+'
+ ac_precious_vars='build_alias
+host_alias
+target_alias
+PYTHON
+CXX
+CXXFLAGS
+LDFLAGS
+LIBS
+CPPFLAGS
+CCC
+CC
+CFLAGS
+CPP'
+
# Initialize some variables set by options.
ac_init_help=
ac_init_version=false
+ac_unrecognized_opts=
+ac_unrecognized_sep=
# The variables have the same names as the options, with
# dashes changed to underlines.
cache_file=/dev/null
@@ -339,34 +811,48 @@ x_libraries=NONE
# and all the variables that are supposed to be based on exec_prefix
# by default will actually change.
# Use braces instead of parens because sh, perl, etc. also accept them.
+# (The list follows the same order as the GNU Coding Standards.)
bindir='${exec_prefix}/bin'
sbindir='${exec_prefix}/sbin'
libexecdir='${exec_prefix}/libexec'
-datadir='${prefix}/share'
+datarootdir='${prefix}/share'
+datadir='${datarootdir}'
sysconfdir='${prefix}/etc'
sharedstatedir='${prefix}/com'
localstatedir='${prefix}/var'
-libdir='${exec_prefix}/lib'
includedir='${prefix}/include'
oldincludedir='/usr/include'
-infodir='${prefix}/info'
-mandir='${prefix}/man'
+docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
+infodir='${datarootdir}/info'
+htmldir='${docdir}'
+dvidir='${docdir}'
+pdfdir='${docdir}'
+psdir='${docdir}'
+libdir='${exec_prefix}/lib'
+localedir='${datarootdir}/locale'
+mandir='${datarootdir}/man'
ac_prev=
+ac_dashdash=
for ac_option
do
# If the previous option needs an argument, assign it.
if test -n "$ac_prev"; then
- eval "$ac_prev=\$ac_option"
+ eval $ac_prev=\$ac_option
ac_prev=
continue
fi
- ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
+ case $ac_option in
+ *=*) ac_optarg=`expr "X$ac_option" : '[^=]*=\(.*\)'` ;;
+ *) ac_optarg=yes ;;
+ esac
# Accept the important Cygnus configure options, so we can diagnose typos.
- case $ac_option in
+ case $ac_dashdash$ac_option in
+ --)
+ ac_dashdash=yes ;;
-bindir | --bindir | --bindi | --bind | --bin | --bi)
ac_prev=bindir ;;
@@ -388,33 +874,61 @@ do
--config-cache | -C)
cache_file=config.cache ;;
- -datadir | --datadir | --datadi | --datad | --data | --dat | --da)
+ -datadir | --datadir | --datadi | --datad)
ac_prev=datadir ;;
- -datadir=* | --datadir=* | --datadi=* | --datad=* | --data=* | --dat=* \
- | --da=*)
+ -datadir=* | --datadir=* | --datadi=* | --datad=*)
datadir=$ac_optarg ;;
+ -datarootdir | --datarootdir | --datarootdi | --datarootd | --dataroot \
+ | --dataroo | --dataro | --datar)
+ ac_prev=datarootdir ;;
+ -datarootdir=* | --datarootdir=* | --datarootdi=* | --datarootd=* \
+ | --dataroot=* | --dataroo=* | --dataro=* | --datar=*)
+ datarootdir=$ac_optarg ;;
+
-disable-* | --disable-*)
- ac_feature=`expr "x$ac_option" : 'x-*disable-\(.*\)'`
+ ac_useropt=`expr "x$ac_option" : 'x-*disable-\(.*\)'`
# Reject names that are not valid shell variable names.
- expr "x$ac_feature" : ".*[^-_$as_cr_alnum]" >/dev/null &&
- { echo "$as_me: error: invalid feature name: $ac_feature" >&2
+ expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
+ { $as_echo "$as_me: error: invalid feature name: $ac_useropt" >&2
{ (exit 1); exit 1; }; }
- ac_feature=`echo $ac_feature | sed 's/-/_/g'`
- eval "enable_$ac_feature=no" ;;
+ ac_useropt_orig=$ac_useropt
+ ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
+ case $ac_user_opts in
+ *"
+"enable_$ac_useropt"
+"*) ;;
+ *) ac_unrecognized_opts="$ac_unrecognized_opts$ac_unrecognized_sep--disable-$ac_useropt_orig"
+ ac_unrecognized_sep=', ';;
+ esac
+ eval enable_$ac_useropt=no ;;
+
+ -docdir | --docdir | --docdi | --doc | --do)
+ ac_prev=docdir ;;
+ -docdir=* | --docdir=* | --docdi=* | --doc=* | --do=*)
+ docdir=$ac_optarg ;;
+
+ -dvidir | --dvidir | --dvidi | --dvid | --dvi | --dv)
+ ac_prev=dvidir ;;
+ -dvidir=* | --dvidir=* | --dvidi=* | --dvid=* | --dvi=* | --dv=*)
+ dvidir=$ac_optarg ;;
-enable-* | --enable-*)
- ac_feature=`expr "x$ac_option" : 'x-*enable-\([^=]*\)'`
+ ac_useropt=`expr "x$ac_option" : 'x-*enable-\([^=]*\)'`
# Reject names that are not valid shell variable names.
- expr "x$ac_feature" : ".*[^-_$as_cr_alnum]" >/dev/null &&
- { echo "$as_me: error: invalid feature name: $ac_feature" >&2
+ expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
+ { $as_echo "$as_me: error: invalid feature name: $ac_useropt" >&2
{ (exit 1); exit 1; }; }
- ac_feature=`echo $ac_feature | sed 's/-/_/g'`
- case $ac_option in
- *=*) ac_optarg=`echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"`;;
- *) ac_optarg=yes ;;
+ ac_useropt_orig=$ac_useropt
+ ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
+ case $ac_user_opts in
+ *"
+"enable_$ac_useropt"
+"*) ;;
+ *) ac_unrecognized_opts="$ac_unrecognized_opts$ac_unrecognized_sep--enable-$ac_useropt_orig"
+ ac_unrecognized_sep=', ';;
esac
- eval "enable_$ac_feature='$ac_optarg'" ;;
+ eval enable_$ac_useropt=\$ac_optarg ;;
-exec-prefix | --exec_prefix | --exec-prefix | --exec-prefi \
| --exec-pref | --exec-pre | --exec-pr | --exec-p | --exec- \
@@ -441,6 +955,12 @@ do
-host=* | --host=* | --hos=* | --ho=*)
host_alias=$ac_optarg ;;
+ -htmldir | --htmldir | --htmldi | --htmld | --html | --htm | --ht)
+ ac_prev=htmldir ;;
+ -htmldir=* | --htmldir=* | --htmldi=* | --htmld=* | --html=* | --htm=* \
+ | --ht=*)
+ htmldir=$ac_optarg ;;
+
-includedir | --includedir | --includedi | --included | --include \
| --includ | --inclu | --incl | --inc)
ac_prev=includedir ;;
@@ -465,13 +985,16 @@ do
| --libexe=* | --libex=* | --libe=*)
libexecdir=$ac_optarg ;;
+ -localedir | --localedir | --localedi | --localed | --locale)
+ ac_prev=localedir ;;
+ -localedir=* | --localedir=* | --localedi=* | --localed=* | --locale=*)
+ localedir=$ac_optarg ;;
+
-localstatedir | --localstatedir | --localstatedi | --localstated \
- | --localstate | --localstat | --localsta | --localst \
- | --locals | --local | --loca | --loc | --lo)
+ | --localstate | --localstat | --localsta | --localst | --locals)
ac_prev=localstatedir ;;
-localstatedir=* | --localstatedir=* | --localstatedi=* | --localstated=* \
- | --localstate=* | --localstat=* | --localsta=* | --localst=* \
- | --locals=* | --local=* | --loca=* | --loc=* | --lo=*)
+ | --localstate=* | --localstat=* | --localsta=* | --localst=* | --locals=*)
localstatedir=$ac_optarg ;;
-mandir | --mandir | --mandi | --mand | --man | --ma | --m)
@@ -536,6 +1059,16 @@ do
| --progr-tra=* | --program-tr=* | --program-t=*)
program_transform_name=$ac_optarg ;;
+ -pdfdir | --pdfdir | --pdfdi | --pdfd | --pdf | --pd)
+ ac_prev=pdfdir ;;
+ -pdfdir=* | --pdfdir=* | --pdfdi=* | --pdfd=* | --pdf=* | --pd=*)
+ pdfdir=$ac_optarg ;;
+
+ -psdir | --psdir | --psdi | --psd | --ps)
+ ac_prev=psdir ;;
+ -psdir=* | --psdir=* | --psdi=* | --psd=* | --ps=*)
+ psdir=$ac_optarg ;;
+
-q | -quiet | --quiet | --quie | --qui | --qu | --q \
| -silent | --silent | --silen | --sile | --sil)
silent=yes ;;
@@ -586,26 +1119,38 @@ do
ac_init_version=: ;;
-with-* | --with-*)
- ac_package=`expr "x$ac_option" : 'x-*with-\([^=]*\)'`
+ ac_useropt=`expr "x$ac_option" : 'x-*with-\([^=]*\)'`
# Reject names that are not valid shell variable names.
- expr "x$ac_package" : ".*[^-_$as_cr_alnum]" >/dev/null &&
- { echo "$as_me: error: invalid package name: $ac_package" >&2
+ expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
+ { $as_echo "$as_me: error: invalid package name: $ac_useropt" >&2
{ (exit 1); exit 1; }; }
- ac_package=`echo $ac_package| sed 's/-/_/g'`
- case $ac_option in
- *=*) ac_optarg=`echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"`;;
- *) ac_optarg=yes ;;
+ ac_useropt_orig=$ac_useropt
+ ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
+ case $ac_user_opts in
+ *"
+"with_$ac_useropt"
+"*) ;;
+ *) ac_unrecognized_opts="$ac_unrecognized_opts$ac_unrecognized_sep--with-$ac_useropt_orig"
+ ac_unrecognized_sep=', ';;
esac
- eval "with_$ac_package='$ac_optarg'" ;;
+ eval with_$ac_useropt=\$ac_optarg ;;
-without-* | --without-*)
- ac_package=`expr "x$ac_option" : 'x-*without-\(.*\)'`
+ ac_useropt=`expr "x$ac_option" : 'x-*without-\(.*\)'`
# Reject names that are not valid shell variable names.
- expr "x$ac_package" : ".*[^-_$as_cr_alnum]" >/dev/null &&
- { echo "$as_me: error: invalid package name: $ac_package" >&2
+ expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
+ { $as_echo "$as_me: error: invalid package name: $ac_useropt" >&2
{ (exit 1); exit 1; }; }
- ac_package=`echo $ac_package | sed 's/-/_/g'`
- eval "with_$ac_package=no" ;;
+ ac_useropt_orig=$ac_useropt
+ ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
+ case $ac_user_opts in
+ *"
+"with_$ac_useropt"
+"*) ;;
+ *) ac_unrecognized_opts="$ac_unrecognized_opts$ac_unrecognized_sep--without-$ac_useropt_orig"
+ ac_unrecognized_sep=', ';;
+ esac
+ eval with_$ac_useropt=no ;;
--x)
# Obsolete; use --with-x.
@@ -625,7 +1170,7 @@ do
| --x-librar=* | --x-libra=* | --x-libr=* | --x-lib=* | --x-li=* | --x-l=*)
x_libraries=$ac_optarg ;;
- -*) { echo "$as_me: error: unrecognized option: $ac_option
+ -*) { $as_echo "$as_me: error: unrecognized option: $ac_option
Try \`$0 --help' for more information." >&2
{ (exit 1); exit 1; }; }
;;
@@ -634,17 +1179,16 @@ Try \`$0 --help' for more information." >&2
ac_envvar=`expr "x$ac_option" : 'x\([^=]*\)='`
# Reject names that are not valid shell variable names.
expr "x$ac_envvar" : ".*[^_$as_cr_alnum]" >/dev/null &&
- { echo "$as_me: error: invalid variable name: $ac_envvar" >&2
+ { $as_echo "$as_me: error: invalid variable name: $ac_envvar" >&2
{ (exit 1); exit 1; }; }
- ac_optarg=`echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"`
- eval "$ac_envvar='$ac_optarg'"
+ eval $ac_envvar=\$ac_optarg
export $ac_envvar ;;
*)
# FIXME: should be removed in autoconf 3.0.
- echo "$as_me: WARNING: you should use --build, --host, --target" >&2
+ $as_echo "$as_me: WARNING: you should use --build, --host, --target" >&2
expr "x$ac_option" : ".*[^-._$as_cr_alnum]" >/dev/null &&
- echo "$as_me: WARNING: invalid host type: $ac_option" >&2
+ $as_echo "$as_me: WARNING: invalid host type: $ac_option" >&2
: ${build_alias=$ac_option} ${host_alias=$ac_option} ${target_alias=$ac_option}
;;
@@ -653,31 +1197,39 @@ done
if test -n "$ac_prev"; then
ac_option=--`echo $ac_prev | sed 's/_/-/g'`
- { echo "$as_me: error: missing argument to $ac_option" >&2
+ { $as_echo "$as_me: error: missing argument to $ac_option" >&2
{ (exit 1); exit 1; }; }
fi
-# Be sure to have absolute paths.
-for ac_var in exec_prefix prefix
-do
- eval ac_val=$`echo $ac_var`
- case $ac_val in
- [\\/$]* | ?:[\\/]* | NONE | '' ) ;;
- *) { echo "$as_me: error: expected an absolute directory name for --$ac_var: $ac_val" >&2
- { (exit 1); exit 1; }; };;
+if test -n "$ac_unrecognized_opts"; then
+ case $enable_option_checking in
+ no) ;;
+ fatal) { $as_echo "$as_me: error: unrecognized options: $ac_unrecognized_opts" >&2
+ { (exit 1); exit 1; }; } ;;
+ *) $as_echo "$as_me: WARNING: unrecognized options: $ac_unrecognized_opts" >&2 ;;
esac
-done
+fi
-# Be sure to have absolute paths.
-for ac_var in bindir sbindir libexecdir datadir sysconfdir sharedstatedir \
- localstatedir libdir includedir oldincludedir infodir mandir
+# Check all directory arguments for consistency.
+for ac_var in exec_prefix prefix bindir sbindir libexecdir datarootdir \
+ datadir sysconfdir sharedstatedir localstatedir includedir \
+ oldincludedir docdir infodir htmldir dvidir pdfdir psdir \
+ libdir localedir mandir
do
- eval ac_val=$`echo $ac_var`
+ eval ac_val=\$$ac_var
+ # Remove trailing slashes.
case $ac_val in
- [\\/$]* | ?:[\\/]* ) ;;
- *) { echo "$as_me: error: expected an absolute directory name for --$ac_var: $ac_val" >&2
- { (exit 1); exit 1; }; };;
+ */ )
+ ac_val=`expr "X$ac_val" : 'X\(.*[^/]\)' \| "X$ac_val" : 'X\(.*\)'`
+ eval $ac_var=\$ac_val;;
esac
+ # Be sure to have absolute directory names.
+ case $ac_val in
+ [\\/$]* | ?:[\\/]* ) continue;;
+ NONE | '' ) case $ac_var in *prefix ) continue;; esac;;
+ esac
+ { $as_echo "$as_me: error: expected an absolute directory name for --$ac_var: $ac_val" >&2
+ { (exit 1); exit 1; }; }
done
# There might be people who depend on the old broken behavior: `$host'
@@ -691,7 +1243,7 @@ target=$target_alias
if test "x$host_alias" != x; then
if test "x$build_alias" = x; then
cross_compiling=maybe
- echo "$as_me: WARNING: If you wanted to set the --build type, don't use --host.
+ $as_echo "$as_me: WARNING: If you wanted to set the --build type, don't use --host.
If a cross compiler is detected then cross compile mode will be used." >&2
elif test "x$build_alias" != "x$host_alias"; then
cross_compiling=yes
@@ -704,87 +1256,77 @@ test -n "$host_alias" && ac_tool_prefix=$host_alias-
test "$silent" = yes && exec 6>/dev/null
+ac_pwd=`pwd` && test -n "$ac_pwd" &&
+ac_ls_di=`ls -di .` &&
+ac_pwd_ls_di=`cd "$ac_pwd" && ls -di .` ||
+ { $as_echo "$as_me: error: working directory cannot be determined" >&2
+ { (exit 1); exit 1; }; }
+test "X$ac_ls_di" = "X$ac_pwd_ls_di" ||
+ { $as_echo "$as_me: error: pwd does not report name of working directory" >&2
+ { (exit 1); exit 1; }; }
+
+
# Find the source files, if location was not specified.
if test -z "$srcdir"; then
ac_srcdir_defaulted=yes
- # Try the directory containing this script, then its parent.
- ac_confdir=`(dirname "$0") 2>/dev/null ||
-$as_expr X"$0" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
- X"$0" : 'X\(//\)[^/]' \| \
- X"$0" : 'X\(//\)$' \| \
- X"$0" : 'X\(/\)' \| \
- . : '\(.\)' 2>/dev/null ||
-echo X"$0" |
- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
- /^X\(\/\/\)$/{ s//\1/; q; }
- /^X\(\/\).*/{ s//\1/; q; }
- s/.*/./; q'`
+ # Try the directory containing this script, then the parent directory.
+ ac_confdir=`$as_dirname -- "$as_myself" ||
+$as_expr X"$as_myself" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
+ X"$as_myself" : 'X\(//\)[^/]' \| \
+ X"$as_myself" : 'X\(//\)$' \| \
+ X"$as_myself" : 'X\(/\)' \| . 2>/dev/null ||
+$as_echo X"$as_myself" |
+ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)[^/].*/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\).*/{
+ s//\1/
+ q
+ }
+ s/.*/./; q'`
srcdir=$ac_confdir
- if test ! -r $srcdir/$ac_unique_file; then
+ if test ! -r "$srcdir/$ac_unique_file"; then
srcdir=..
fi
else
ac_srcdir_defaulted=no
fi
-if test ! -r $srcdir/$ac_unique_file; then
- if test "$ac_srcdir_defaulted" = yes; then
- { echo "$as_me: error: cannot find sources ($ac_unique_file) in $ac_confdir or .." >&2
+if test ! -r "$srcdir/$ac_unique_file"; then
+ test "$ac_srcdir_defaulted" = yes && srcdir="$ac_confdir or .."
+ { $as_echo "$as_me: error: cannot find sources ($ac_unique_file) in $srcdir" >&2
{ (exit 1); exit 1; }; }
- else
- { echo "$as_me: error: cannot find sources ($ac_unique_file) in $srcdir" >&2
- { (exit 1); exit 1; }; }
- fi
fi
-(cd $srcdir && test -r ./$ac_unique_file) 2>/dev/null ||
- { echo "$as_me: error: sources are in $srcdir, but \`cd $srcdir' does not work" >&2
+ac_msg="sources are in $srcdir, but \`cd $srcdir' does not work"
+ac_abs_confdir=`(
+ cd "$srcdir" && test -r "./$ac_unique_file" || { $as_echo "$as_me: error: $ac_msg" >&2
{ (exit 1); exit 1; }; }
-srcdir=`echo "$srcdir" | sed 's%\([^\\/]\)[\\/]*$%\1%'`
-ac_env_build_alias_set=${build_alias+set}
-ac_env_build_alias_value=$build_alias
-ac_cv_env_build_alias_set=${build_alias+set}
-ac_cv_env_build_alias_value=$build_alias
-ac_env_host_alias_set=${host_alias+set}
-ac_env_host_alias_value=$host_alias
-ac_cv_env_host_alias_set=${host_alias+set}
-ac_cv_env_host_alias_value=$host_alias
-ac_env_target_alias_set=${target_alias+set}
-ac_env_target_alias_value=$target_alias
-ac_cv_env_target_alias_set=${target_alias+set}
-ac_cv_env_target_alias_value=$target_alias
-ac_env_PYTHON_set=${PYTHON+set}
-ac_env_PYTHON_value=$PYTHON
-ac_cv_env_PYTHON_set=${PYTHON+set}
-ac_cv_env_PYTHON_value=$PYTHON
-ac_env_CXX_set=${CXX+set}
-ac_env_CXX_value=$CXX
-ac_cv_env_CXX_set=${CXX+set}
-ac_cv_env_CXX_value=$CXX
-ac_env_CXXFLAGS_set=${CXXFLAGS+set}
-ac_env_CXXFLAGS_value=$CXXFLAGS
-ac_cv_env_CXXFLAGS_set=${CXXFLAGS+set}
-ac_cv_env_CXXFLAGS_value=$CXXFLAGS
-ac_env_LDFLAGS_set=${LDFLAGS+set}
-ac_env_LDFLAGS_value=$LDFLAGS
-ac_cv_env_LDFLAGS_set=${LDFLAGS+set}
-ac_cv_env_LDFLAGS_value=$LDFLAGS
-ac_env_CPPFLAGS_set=${CPPFLAGS+set}
-ac_env_CPPFLAGS_value=$CPPFLAGS
-ac_cv_env_CPPFLAGS_set=${CPPFLAGS+set}
-ac_cv_env_CPPFLAGS_value=$CPPFLAGS
-ac_env_CC_set=${CC+set}
-ac_env_CC_value=$CC
-ac_cv_env_CC_set=${CC+set}
-ac_cv_env_CC_value=$CC
-ac_env_CFLAGS_set=${CFLAGS+set}
-ac_env_CFLAGS_value=$CFLAGS
-ac_cv_env_CFLAGS_set=${CFLAGS+set}
-ac_cv_env_CFLAGS_value=$CFLAGS
-ac_env_CPP_set=${CPP+set}
-ac_env_CPP_value=$CPP
-ac_cv_env_CPP_set=${CPP+set}
-ac_cv_env_CPP_value=$CPP
-
+ pwd)`
+# When building in place, set srcdir=.
+if test "$ac_abs_confdir" = "$ac_pwd"; then
+ srcdir=.
+fi
+# Remove unnecessary trailing slashes from srcdir.
+# Double slashes in file names in object file debugging info
+# mess up M-x gdb in Emacs.
+case $srcdir in
+*/) srcdir=`expr "X$srcdir" : 'X\(.*[^/]\)' \| "X$srcdir" : 'X\(.*\)'`;;
+esac
+for ac_var in $ac_precious_vars; do
+ eval ac_env_${ac_var}_set=\${${ac_var}+set}
+ eval ac_env_${ac_var}_value=\$${ac_var}
+ eval ac_cv_env_${ac_var}_set=\${${ac_var}+set}
+ eval ac_cv_env_${ac_var}_value=\$${ac_var}
+done
+
#
# Report the --help message.
#
@@ -792,7 +1334,7 @@ if test "$ac_init_help" = "long"; then
# Omit some internal or obsolete options to make the list less imposing.
# This message is too long to be a string in the A/UX 3.1 sh.
cat <<_ACEOF
-\`configure' configures cufflinks 2.2.0 to adapt to many kinds of systems.
+\`configure' configures cufflinks 2.2.1 to adapt to many kinds of systems.
Usage: $0 [OPTION]... [VAR=VALUE]...
@@ -812,14 +1354,11 @@ Configuration:
-n, --no-create do not create output files
--srcdir=DIR find the sources in DIR [configure dir or \`..']
-_ACEOF
-
- cat <<_ACEOF
Installation directories:
--prefix=PREFIX install architecture-independent files in PREFIX
- [$ac_default_prefix]
+ [$ac_default_prefix]
--exec-prefix=EPREFIX install architecture-dependent files in EPREFIX
- [PREFIX]
+ [PREFIX]
By default, \`make install' will install all the files in
\`$ac_default_prefix/bin', \`$ac_default_prefix/lib' etc. You can specify
@@ -829,18 +1368,25 @@ for instance \`--prefix=\$HOME'.
For better control, use the options below.
Fine tuning of the installation directories:
- --bindir=DIR user executables [EPREFIX/bin]
- --sbindir=DIR system admin executables [EPREFIX/sbin]
- --libexecdir=DIR program executables [EPREFIX/libexec]
- --datadir=DIR read-only architecture-independent data [PREFIX/share]
- --sysconfdir=DIR read-only single-machine data [PREFIX/etc]
- --sharedstatedir=DIR modifiable architecture-independent data [PREFIX/com]
- --localstatedir=DIR modifiable single-machine data [PREFIX/var]
- --libdir=DIR object code libraries [EPREFIX/lib]
- --includedir=DIR C header files [PREFIX/include]
- --oldincludedir=DIR C header files for non-gcc [/usr/include]
- --infodir=DIR info documentation [PREFIX/info]
- --mandir=DIR man documentation [PREFIX/man]
+ --bindir=DIR user executables [EPREFIX/bin]
+ --sbindir=DIR system admin executables [EPREFIX/sbin]
+ --libexecdir=DIR program executables [EPREFIX/libexec]
+ --sysconfdir=DIR read-only single-machine data [PREFIX/etc]
+ --sharedstatedir=DIR modifiable architecture-independent data [PREFIX/com]
+ --localstatedir=DIR modifiable single-machine data [PREFIX/var]
+ --libdir=DIR object code libraries [EPREFIX/lib]
+ --includedir=DIR C header files [PREFIX/include]
+ --oldincludedir=DIR C header files for non-gcc [/usr/include]
+ --datarootdir=DIR read-only arch.-independent data root [PREFIX/share]
+ --datadir=DIR read-only architecture-independent data [DATAROOTDIR]
+ --infodir=DIR info documentation [DATAROOTDIR/info]
+ --localedir=DIR locale-dependent data [DATAROOTDIR/locale]
+ --mandir=DIR man documentation [DATAROOTDIR/man]
+ --docdir=DIR documentation root [DATAROOTDIR/doc/cufflinks]
+ --htmldir=DIR html documentation [DOCDIR]
+ --dvidir=DIR dvi documentation [DOCDIR]
+ --pdfdir=DIR pdf documentation [DOCDIR]
+ --psdir=DIR ps documentation [DOCDIR]
_ACEOF
cat <<\_ACEOF
@@ -858,11 +1404,12 @@ fi
if test -n "$ac_init_help"; then
case $ac_init_help in
- short | recursive ) echo "Configuration of cufflinks 2.2.0:";;
+ short | recursive ) echo "Configuration of cufflinks 2.2.1:";;
esac
cat <<\_ACEOF
Optional Features:
+ --disable-option-checking ignore unrecognized --enable/--with options
--disable-FEATURE do not include FEATURE (same as --enable-FEATURE=no)
--enable-FEATURE[=ARG] include FEATURE [ARG=yes]
--disable-dependency-tracking speeds up one-time build
@@ -877,8 +1424,7 @@ Optional Features:
Optional Packages:
--with-PACKAGE[=ARG] use PACKAGE [ARG=yes]
--without-PACKAGE do not use PACKAGE (same as --with-PACKAGE=no)
- --with-boost[=DIR]
- use boost (default is yes) - it is possible to
+ --with-boost[=DIR] use boost (default is yes) - it is possible to
specify the root directory for boost (optional)
--with-boost-libdir=LIB_DIR
Force given directory for boost libraries. Note that
@@ -886,7 +1432,7 @@ Optional Packages:
this parameter only if default library detection
fails and you know exactly where your boost
libraries are located.
- --with-bam[=DIR] use BAM libraries (default is yes) - it is possible
+ --with-bam[=DIR] use BAM libraries (default is yes) - it is possible
to specify the root directory for BAM (optional)
--with-bam-libdir=LIB_DIR
Force given directory for bam libraries. Note that
@@ -910,8 +1456,7 @@ Optional Packages:
--with-zlib=DIR root directory path of zlib installation defaults to
/usr/local or /usr if not found in /usr/local
--without-zlib to disable zlib usage completely
- --with-eigen[=DIR]
- use EIGEN libraries (default is yes) - it is
+ --with-eigen[=DIR] use EIGEN libraries (default is yes) - it is
possible to specify the root directory for EIGEN
(optional)
@@ -921,8 +1466,9 @@ Some influential environment variables:
CXXFLAGS C++ compiler flags
LDFLAGS linker flags, e.g. -L<lib dir> if you have libraries in a
nonstandard directory <lib dir>
- CPPFLAGS C/C++ preprocessor flags, e.g. -I<include dir> if you have
- headers in a nonstandard directory <include dir>
+ LIBS libraries to pass to the linker, e.g. -l<library>
+ CPPFLAGS C/C++/Objective C preprocessor flags, e.g. -I<include dir> if
+ you have headers in a nonstandard directory <include dir>
CC C compiler command
CFLAGS C compiler flags
CPP C preprocessor
@@ -932,120 +1478,88 @@ it to find libraries and programs with nonstandard names/locations.
Report bugs to <cole at cs.umd.edu>.
_ACEOF
+ac_status=$?
fi
if test "$ac_init_help" = "recursive"; then
# If there are subdirs, report their specific --help.
- ac_popdir=`pwd`
for ac_dir in : $ac_subdirs_all; do test "x$ac_dir" = x: && continue
- test -d $ac_dir || continue
+ test -d "$ac_dir" ||
+ { cd "$srcdir" && ac_pwd=`pwd` && srcdir=. && test -d "$ac_dir"; } ||
+ continue
ac_builddir=.
-if test "$ac_dir" != .; then
- ac_dir_suffix=/`echo "$ac_dir" | sed 's,^\.[\\/],,'`
- # A "../" for each directory in $ac_dir_suffix.
- ac_top_builddir=`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,../,g'`
-else
- ac_dir_suffix= ac_top_builddir=
-fi
+case "$ac_dir" in
+.) ac_dir_suffix= ac_top_builddir_sub=. ac_top_build_prefix= ;;
+*)
+ ac_dir_suffix=/`$as_echo "$ac_dir" | sed 's|^\.[\\/]||'`
+ # A ".." for each directory in $ac_dir_suffix.
+ ac_top_builddir_sub=`$as_echo "$ac_dir_suffix" | sed 's|/[^\\/]*|/..|g;s|/||'`
+ case $ac_top_builddir_sub in
+ "") ac_top_builddir_sub=. ac_top_build_prefix= ;;
+ *) ac_top_build_prefix=$ac_top_builddir_sub/ ;;
+ esac ;;
+esac
+ac_abs_top_builddir=$ac_pwd
+ac_abs_builddir=$ac_pwd$ac_dir_suffix
+# for backward compatibility:
+ac_top_builddir=$ac_top_build_prefix
case $srcdir in
- .) # No --srcdir option. We are building in place.
+ .) # We are building in place.
ac_srcdir=.
- if test -z "$ac_top_builddir"; then
- ac_top_srcdir=.
- else
- ac_top_srcdir=`echo $ac_top_builddir | sed 's,/$,,'`
- fi ;;
- [\\/]* | ?:[\\/]* ) # Absolute path.
+ ac_top_srcdir=$ac_top_builddir_sub
+ ac_abs_top_srcdir=$ac_pwd ;;
+ [\\/]* | ?:[\\/]* ) # Absolute name.
ac_srcdir=$srcdir$ac_dir_suffix;
- ac_top_srcdir=$srcdir ;;
- *) # Relative path.
- ac_srcdir=$ac_top_builddir$srcdir$ac_dir_suffix
- ac_top_srcdir=$ac_top_builddir$srcdir ;;
-esac
-
-# Do not use `cd foo && pwd` to compute absolute paths, because
-# the directories may not exist.
-case `pwd` in
-.) ac_abs_builddir="$ac_dir";;
-*)
- case "$ac_dir" in
- .) ac_abs_builddir=`pwd`;;
- [\\/]* | ?:[\\/]* ) ac_abs_builddir="$ac_dir";;
- *) ac_abs_builddir=`pwd`/"$ac_dir";;
- esac;;
+ ac_top_srcdir=$srcdir
+ ac_abs_top_srcdir=$srcdir ;;
+ *) # Relative name.
+ ac_srcdir=$ac_top_build_prefix$srcdir$ac_dir_suffix
+ ac_top_srcdir=$ac_top_build_prefix$srcdir
+ ac_abs_top_srcdir=$ac_pwd/$srcdir ;;
esac
-case $ac_abs_builddir in
-.) ac_abs_top_builddir=${ac_top_builddir}.;;
-*)
- case ${ac_top_builddir}. in
- .) ac_abs_top_builddir=$ac_abs_builddir;;
- [\\/]* | ?:[\\/]* ) ac_abs_top_builddir=${ac_top_builddir}.;;
- *) ac_abs_top_builddir=$ac_abs_builddir/${ac_top_builddir}.;;
- esac;;
-esac
-case $ac_abs_builddir in
-.) ac_abs_srcdir=$ac_srcdir;;
-*)
- case $ac_srcdir in
- .) ac_abs_srcdir=$ac_abs_builddir;;
- [\\/]* | ?:[\\/]* ) ac_abs_srcdir=$ac_srcdir;;
- *) ac_abs_srcdir=$ac_abs_builddir/$ac_srcdir;;
- esac;;
-esac
-case $ac_abs_builddir in
-.) ac_abs_top_srcdir=$ac_top_srcdir;;
-*)
- case $ac_top_srcdir in
- .) ac_abs_top_srcdir=$ac_abs_builddir;;
- [\\/]* | ?:[\\/]* ) ac_abs_top_srcdir=$ac_top_srcdir;;
- *) ac_abs_top_srcdir=$ac_abs_builddir/$ac_top_srcdir;;
- esac;;
-esac
-
- cd $ac_dir
- # Check for guested configure; otherwise get Cygnus style configure.
- if test -f $ac_srcdir/configure.gnu; then
- echo
- $SHELL $ac_srcdir/configure.gnu --help=recursive
- elif test -f $ac_srcdir/configure; then
- echo
- $SHELL $ac_srcdir/configure --help=recursive
- elif test -f $ac_srcdir/configure.ac ||
- test -f $ac_srcdir/configure.in; then
- echo
- $ac_configure --help
+ac_abs_srcdir=$ac_abs_top_srcdir$ac_dir_suffix
+
+ cd "$ac_dir" || { ac_status=$?; continue; }
+ # Check for guested configure.
+ if test -f "$ac_srcdir/configure.gnu"; then
+ echo &&
+ $SHELL "$ac_srcdir/configure.gnu" --help=recursive
+ elif test -f "$ac_srcdir/configure"; then
+ echo &&
+ $SHELL "$ac_srcdir/configure" --help=recursive
else
- echo "$as_me: WARNING: no configuration information is in $ac_dir" >&2
- fi
- cd $ac_popdir
+ $as_echo "$as_me: WARNING: no configuration information is in $ac_dir" >&2
+ fi || ac_status=$?
+ cd "$ac_pwd" || { ac_status=$?; break; }
done
fi
-test -n "$ac_init_help" && exit 0
+test -n "$ac_init_help" && exit $ac_status
if $ac_init_version; then
cat <<\_ACEOF
-cufflinks configure 2.2.0
-generated by GNU Autoconf 2.59
+cufflinks configure 2.2.1
+generated by GNU Autoconf 2.63
-Copyright (C) 2003 Free Software Foundation, Inc.
+Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001,
+2002, 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc.
This configure script is free software; the Free Software Foundation
gives unlimited permission to copy, distribute and modify it.
_ACEOF
- exit 0
+ exit
fi
-exec 5>config.log
-cat >&5 <<_ACEOF
+cat >config.log <<_ACEOF
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
-It was created by cufflinks $as_me 2.2.0, which was
-generated by GNU Autoconf 2.59. Invocation command line was
+It was created by cufflinks $as_me 2.2.1, which was
+generated by GNU Autoconf 2.63. Invocation command line was
$ $0 $@
_ACEOF
+exec 5>>config.log
{
cat <<_ASUNAME
## --------- ##
@@ -1064,7 +1578,7 @@ uname -v = `(uname -v) 2>/dev/null || echo unknown`
/bin/arch = `(/bin/arch) 2>/dev/null || echo unknown`
/usr/bin/arch -k = `(/usr/bin/arch -k) 2>/dev/null || echo unknown`
/usr/convex/getsysinfo = `(/usr/convex/getsysinfo) 2>/dev/null || echo unknown`
-hostinfo = `(hostinfo) 2>/dev/null || echo unknown`
+/usr/bin/hostinfo = `(/usr/bin/hostinfo) 2>/dev/null || echo unknown`
/bin/machine = `(/bin/machine) 2>/dev/null || echo unknown`
/usr/bin/oslevel = `(/usr/bin/oslevel) 2>/dev/null || echo unknown`
/bin/universe = `(/bin/universe) 2>/dev/null || echo unknown`
@@ -1076,8 +1590,9 @@ for as_dir in $PATH
do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
- echo "PATH: $as_dir"
+ $as_echo "PATH: $as_dir"
done
+IFS=$as_save_IFS
} >&5
@@ -1099,7 +1614,6 @@ _ACEOF
ac_configure_args=
ac_configure_args0=
ac_configure_args1=
-ac_sep=
ac_must_keep_next=false
for ac_pass in 1 2
do
@@ -1110,8 +1624,8 @@ do
-q | -quiet | --quiet | --quie | --qui | --qu | --q \
| -silent | --silent | --silen | --sile | --sil)
continue ;;
- *" "*|*" "*|*[\[\]\~\#\$\^\&\*\(\)\{\}\\\|\;\<\>\?\"\']*)
- ac_arg=`echo "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;;
+ *\'*)
+ ac_arg=`$as_echo "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;;
esac
case $ac_pass in
1) ac_configure_args0="$ac_configure_args0 '$ac_arg'" ;;
@@ -1132,9 +1646,7 @@ do
-* ) ac_must_keep_next=true ;;
esac
fi
- ac_configure_args="$ac_configure_args$ac_sep'$ac_arg'"
- # Get rid of the leading space.
- ac_sep=" "
+ ac_configure_args="$ac_configure_args '$ac_arg'"
;;
esac
done
@@ -1145,8 +1657,8 @@ $as_unset ac_configure_args1 || test "${ac_configure_args1+set}" != set || { ac_
# When interrupted or exit'd, cleanup temporary files, and complete
# config.log. We remove comments because anyway the quotes in there
# would cause problems or look ugly.
-# WARNING: Be sure not to use single quotes in there, as some shells,
-# such as our DU 5.0 friend, will then `close' the trap.
+# WARNING: Use '\'' to represent an apostrophe within the trap.
+# WARNING: Do not start the trap code with a newline, due to a FreeBSD 4.0 bug.
trap 'exit_status=$?
# Save into config.log some information that might help in debugging.
{
@@ -1159,20 +1671,35 @@ trap 'exit_status=$?
_ASBOX
echo
# The following way of writing the cache mishandles newlines in values,
-{
+(
+ for ac_var in `(set) 2>&1 | sed -n '\''s/^\([a-zA-Z_][a-zA-Z0-9_]*\)=.*/\1/p'\''`; do
+ eval ac_val=\$$ac_var
+ case $ac_val in #(
+ *${as_nl}*)
+ case $ac_var in #(
+ *_cv_*) { $as_echo "$as_me:$LINENO: WARNING: cache variable $ac_var contains a newline" >&5
+$as_echo "$as_me: WARNING: cache variable $ac_var contains a newline" >&2;} ;;
+ esac
+ case $ac_var in #(
+ _ | IFS | as_nl) ;; #(
+ BASH_ARGV | BASH_SOURCE) eval $ac_var= ;; #(
+ *) $as_unset $ac_var ;;
+ esac ;;
+ esac
+ done
(set) 2>&1 |
- case `(ac_space='"'"' '"'"'; set | grep ac_space) 2>&1` in
- *ac_space=\ *)
+ case $as_nl`(ac_space='\'' '\''; set) 2>&1` in #(
+ *${as_nl}ac_space=\ *)
sed -n \
- "s/'"'"'/'"'"'\\\\'"'"''"'"'/g;
- s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='"'"'\\2'"'"'/p"
- ;;
+ "s/'\''/'\''\\\\'\'''\''/g;
+ s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\''\\2'\''/p"
+ ;; #(
*)
- sed -n \
- "s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1=\\2/p"
+ sed -n "/^[_$as_cr_alnum]*_cv_[_$as_cr_alnum]*=/p"
;;
- esac;
-}
+ esac |
+ sort
+)
echo
cat <<\_ASBOX
@@ -1183,22 +1710,28 @@ _ASBOX
echo
for ac_var in $ac_subst_vars
do
- eval ac_val=$`echo $ac_var`
- echo "$ac_var='"'"'$ac_val'"'"'"
+ eval ac_val=\$$ac_var
+ case $ac_val in
+ *\'\''*) ac_val=`$as_echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
+ esac
+ $as_echo "$ac_var='\''$ac_val'\''"
done | sort
echo
if test -n "$ac_subst_files"; then
cat <<\_ASBOX
-## ------------- ##
-## Output files. ##
-## ------------- ##
+## ------------------- ##
+## File substitutions. ##
+## ------------------- ##
_ASBOX
echo
for ac_var in $ac_subst_files
do
- eval ac_val=$`echo $ac_var`
- echo "$ac_var='"'"'$ac_val'"'"'"
+ eval ac_val=\$$ac_var
+ case $ac_val in
+ *\'\''*) ac_val=`$as_echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
+ esac
+ $as_echo "$ac_var='\''$ac_val'\''"
done | sort
echo
fi
@@ -1210,26 +1743,24 @@ _ASBOX
## ----------- ##
_ASBOX
echo
- sed "/^$/d" confdefs.h | sort
+ cat confdefs.h
echo
fi
test "$ac_signal" != 0 &&
- echo "$as_me: caught signal $ac_signal"
- echo "$as_me: exit $exit_status"
+ $as_echo "$as_me: caught signal $ac_signal"
+ $as_echo "$as_me: exit $exit_status"
} >&5
- rm -f core *.core &&
- rm -rf conftest* confdefs* conf$$* $ac_clean_files &&
+ rm -f core *.core core.conftest.* &&
+ rm -f -r conftest* confdefs* conf$$* $ac_clean_files &&
exit $exit_status
- ' 0
+' 0
for ac_signal in 1 2 13 15; do
trap 'ac_signal='$ac_signal'; { (exit 1); exit 1; }' $ac_signal
done
ac_signal=0
# confdefs.h avoids OS command line length limits that DEFS can exceed.
-rm -rf conftest* confdefs.h
-# AIX cpp loses on an empty file, so make sure it contains at least a newline.
-echo >confdefs.h
+rm -f -r conftest* confdefs.h
# Predefined preprocessor variables.
@@ -1259,18 +1790,24 @@ _ACEOF
# Let the site file select an alternate cache file if it wants to.
-# Prefer explicitly selected file to automatically selected ones.
-if test -z "$CONFIG_SITE"; then
- if test "x$prefix" != xNONE; then
- CONFIG_SITE="$prefix/share/config.site $prefix/etc/config.site"
- else
- CONFIG_SITE="$ac_default_prefix/share/config.site $ac_default_prefix/etc/config.site"
- fi
-fi
-for ac_site_file in $CONFIG_SITE; do
+# Prefer an explicitly selected file to automatically selected ones.
+ac_site_file1=NONE
+ac_site_file2=NONE
+if test -n "$CONFIG_SITE"; then
+ ac_site_file1=$CONFIG_SITE
+elif test "x$prefix" != xNONE; then
+ ac_site_file1=$prefix/share/config.site
+ ac_site_file2=$prefix/etc/config.site
+else
+ ac_site_file1=$ac_default_prefix/share/config.site
+ ac_site_file2=$ac_default_prefix/etc/config.site
+fi
+for ac_site_file in "$ac_site_file1" "$ac_site_file2"
+do
+ test "x$ac_site_file" = xNONE && continue
if test -r "$ac_site_file"; then
- { echo "$as_me:$LINENO: loading site script $ac_site_file" >&5
-echo "$as_me: loading site script $ac_site_file" >&6;}
+ { $as_echo "$as_me:$LINENO: loading site script $ac_site_file" >&5
+$as_echo "$as_me: loading site script $ac_site_file" >&6;}
sed 's/^/| /' "$ac_site_file" >&5
. "$ac_site_file"
fi
@@ -1280,54 +1817,61 @@ if test -r "$cache_file"; then
# Some versions of bash will fail to source /dev/null (special
# files actually), so we avoid doing that.
if test -f "$cache_file"; then
- { echo "$as_me:$LINENO: loading cache $cache_file" >&5
-echo "$as_me: loading cache $cache_file" >&6;}
+ { $as_echo "$as_me:$LINENO: loading cache $cache_file" >&5
+$as_echo "$as_me: loading cache $cache_file" >&6;}
case $cache_file in
- [\\/]* | ?:[\\/]* ) . $cache_file;;
- *) . ./$cache_file;;
+ [\\/]* | ?:[\\/]* ) . "$cache_file";;
+ *) . "./$cache_file";;
esac
fi
else
- { echo "$as_me:$LINENO: creating cache $cache_file" >&5
-echo "$as_me: creating cache $cache_file" >&6;}
+ { $as_echo "$as_me:$LINENO: creating cache $cache_file" >&5
+$as_echo "$as_me: creating cache $cache_file" >&6;}
>$cache_file
fi
# Check that the precious variables saved in the cache have kept the same
# value.
ac_cache_corrupted=false
-for ac_var in `(set) 2>&1 |
- sed -n 's/^ac_env_\([a-zA-Z_0-9]*\)_set=.*/\1/p'`; do
+for ac_var in $ac_precious_vars; do
eval ac_old_set=\$ac_cv_env_${ac_var}_set
eval ac_new_set=\$ac_env_${ac_var}_set
- eval ac_old_val="\$ac_cv_env_${ac_var}_value"
- eval ac_new_val="\$ac_env_${ac_var}_value"
+ eval ac_old_val=\$ac_cv_env_${ac_var}_value
+ eval ac_new_val=\$ac_env_${ac_var}_value
case $ac_old_set,$ac_new_set in
set,)
- { echo "$as_me:$LINENO: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&5
-echo "$as_me: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&2;}
+ { $as_echo "$as_me:$LINENO: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&5
+$as_echo "$as_me: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&2;}
ac_cache_corrupted=: ;;
,set)
- { echo "$as_me:$LINENO: error: \`$ac_var' was not set in the previous run" >&5
-echo "$as_me: error: \`$ac_var' was not set in the previous run" >&2;}
+ { $as_echo "$as_me:$LINENO: error: \`$ac_var' was not set in the previous run" >&5
+$as_echo "$as_me: error: \`$ac_var' was not set in the previous run" >&2;}
ac_cache_corrupted=: ;;
,);;
*)
if test "x$ac_old_val" != "x$ac_new_val"; then
- { echo "$as_me:$LINENO: error: \`$ac_var' has changed since the previous run:" >&5
-echo "$as_me: error: \`$ac_var' has changed since the previous run:" >&2;}
- { echo "$as_me:$LINENO: former value: $ac_old_val" >&5
-echo "$as_me: former value: $ac_old_val" >&2;}
- { echo "$as_me:$LINENO: current value: $ac_new_val" >&5
-echo "$as_me: current value: $ac_new_val" >&2;}
- ac_cache_corrupted=:
+ # differences in whitespace do not lead to failure.
+ ac_old_val_w=`echo x $ac_old_val`
+ ac_new_val_w=`echo x $ac_new_val`
+ if test "$ac_old_val_w" != "$ac_new_val_w"; then
+ { $as_echo "$as_me:$LINENO: error: \`$ac_var' has changed since the previous run:" >&5
+$as_echo "$as_me: error: \`$ac_var' has changed since the previous run:" >&2;}
+ ac_cache_corrupted=:
+ else
+ { $as_echo "$as_me:$LINENO: warning: ignoring whitespace changes in \`$ac_var' since the previous run:" >&5
+$as_echo "$as_me: warning: ignoring whitespace changes in \`$ac_var' since the previous run:" >&2;}
+ eval $ac_var=\$ac_old_val
+ fi
+ { $as_echo "$as_me:$LINENO: former value: \`$ac_old_val'" >&5
+$as_echo "$as_me: former value: \`$ac_old_val'" >&2;}
+ { $as_echo "$as_me:$LINENO: current value: \`$ac_new_val'" >&5
+$as_echo "$as_me: current value: \`$ac_new_val'" >&2;}
fi;;
esac
# Pass precious variables to config.status.
if test "$ac_new_set" = set; then
case $ac_new_val in
- *" "*|*" "*|*[\[\]\~\#\$\^\&\*\(\)\{\}\\\|\;\<\>\?\"\']*)
- ac_arg=$ac_var=`echo "$ac_new_val" | sed "s/'/'\\\\\\\\''/g"` ;;
+ *\'*) ac_arg=$ac_var=`$as_echo "$ac_new_val" | sed "s/'/'\\\\\\\\''/g"` ;;
*) ac_arg=$ac_var=$ac_new_val ;;
esac
case " $ac_configure_args " in
@@ -1337,19 +1881,15 @@ echo "$as_me: current value: $ac_new_val" >&2;}
fi
done
if $ac_cache_corrupted; then
- { echo "$as_me:$LINENO: error: changes in the environment can compromise the build" >&5
-echo "$as_me: error: changes in the environment can compromise the build" >&2;}
- { { echo "$as_me:$LINENO: error: run \`make distclean' and/or \`rm $cache_file' and start over" >&5
-echo "$as_me: error: run \`make distclean' and/or \`rm $cache_file' and start over" >&2;}
+ { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+ { $as_echo "$as_me:$LINENO: error: changes in the environment can compromise the build" >&5
+$as_echo "$as_me: error: changes in the environment can compromise the build" >&2;}
+ { { $as_echo "$as_me:$LINENO: error: run \`make distclean' and/or \`rm $cache_file' and start over" >&5
+$as_echo "$as_me: error: run \`make distclean' and/or \`rm $cache_file' and start over" >&2;}
{ (exit 1); exit 1; }; }
fi
-ac_ext=c
-ac_cpp='$CPP $CPPFLAGS'
-ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-ac_compiler_gnu=$ac_cv_c_compiler_gnu
-
@@ -1374,41 +1914,52 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu
+ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
cat >>confdefs.h <<\_ACEOF
-#define SVN_REVISION "4222"
+#define SVN_REVISION "4237"
_ACEOF
- ac_config_headers="$ac_config_headers config.h"
+ac_config_headers="$ac_config_headers config.h"
ac_aux_dir=
-for ac_dir in build-aux $srcdir/build-aux; do
- if test -f $ac_dir/install-sh; then
+for ac_dir in build-aux "$srcdir"/build-aux; do
+ if test -f "$ac_dir/install-sh"; then
ac_aux_dir=$ac_dir
ac_install_sh="$ac_aux_dir/install-sh -c"
break
- elif test -f $ac_dir/install.sh; then
+ elif test -f "$ac_dir/install.sh"; then
ac_aux_dir=$ac_dir
ac_install_sh="$ac_aux_dir/install.sh -c"
break
- elif test -f $ac_dir/shtool; then
+ elif test -f "$ac_dir/shtool"; then
ac_aux_dir=$ac_dir
ac_install_sh="$ac_aux_dir/shtool install -c"
break
fi
done
if test -z "$ac_aux_dir"; then
- { { echo "$as_me:$LINENO: error: cannot find install-sh or install.sh in build-aux $srcdir/build-aux" >&5
-echo "$as_me: error: cannot find install-sh or install.sh in build-aux $srcdir/build-aux" >&2;}
+ { { $as_echo "$as_me:$LINENO: error: cannot find install-sh or install.sh in build-aux \"$srcdir\"/build-aux" >&5
+$as_echo "$as_me: error: cannot find install-sh or install.sh in build-aux \"$srcdir\"/build-aux" >&2;}
{ (exit 1); exit 1; }; }
fi
-ac_config_guess="$SHELL $ac_aux_dir/config.guess"
-ac_config_sub="$SHELL $ac_aux_dir/config.sub"
-ac_configure="$SHELL $ac_aux_dir/configure" # This should be Cygnus configure.
+
+# These three variables are undocumented and unsupported,
+# and are intended to be withdrawn in a future Autoconf release.
+# They can cause serious problems if a builder's source tree is in a directory
+# whose full name contains unusual characters.
+ac_config_guess="$SHELL $ac_aux_dir/config.guess" # Please don't use this var.
+ac_config_sub="$SHELL $ac_aux_dir/config.sub" # Please don't use this var.
+ac_configure="$SHELL $ac_aux_dir/configure" # Please don't use this var.
+
am__api_version="1.9"
# Find a good install program. We prefer a C program (faster),
@@ -1424,11 +1975,12 @@ am__api_version="1.9"
# SVR4 /usr/ucb/install, which tries to use the nonexistent group "staff"
# OS/2's system install, which has a completely different semantic
# ./install, which can be erroneously created by make from ./install.sh.
-echo "$as_me:$LINENO: checking for a BSD-compatible install" >&5
-echo $ECHO_N "checking for a BSD-compatible install... $ECHO_C" >&6
+# Reject install programs that cannot install multiple files.
+{ $as_echo "$as_me:$LINENO: checking for a BSD-compatible install" >&5
+$as_echo_n "checking for a BSD-compatible install... " >&6; }
if test -z "$INSTALL"; then
if test "${ac_cv_path_install+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
@@ -1447,7 +1999,7 @@ case $as_dir/ in
# by default.
for ac_prog in ginstall scoinst install; do
for ac_exec_ext in '' $ac_executable_extensions; do
- if $as_executable_p "$as_dir/$ac_prog$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_prog$ac_exec_ext" && $as_test_x "$as_dir/$ac_prog$ac_exec_ext"; }; then
if test $ac_prog = install &&
grep dspmsg "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then
# AIX install. It has an incompatible calling convention.
@@ -1457,30 +2009,43 @@ case $as_dir/ in
# program-specific install script used by HP pwplus--don't use.
:
else
- ac_cv_path_install="$as_dir/$ac_prog$ac_exec_ext -c"
- break 3
+ rm -rf conftest.one conftest.two conftest.dir
+ echo one > conftest.one
+ echo two > conftest.two
+ mkdir conftest.dir
+ if "$as_dir/$ac_prog$ac_exec_ext" -c conftest.one conftest.two "`pwd`/conftest.dir" &&
+ test -s conftest.one && test -s conftest.two &&
+ test -s conftest.dir/conftest.one &&
+ test -s conftest.dir/conftest.two
+ then
+ ac_cv_path_install="$as_dir/$ac_prog$ac_exec_ext -c"
+ break 3
+ fi
fi
fi
done
done
;;
esac
+
done
+IFS=$as_save_IFS
+rm -rf conftest.one conftest.two conftest.dir
fi
if test "${ac_cv_path_install+set}" = set; then
INSTALL=$ac_cv_path_install
else
- # As a last resort, use the slow shell script. We don't cache a
- # path for INSTALL within a source directory, because that will
+ # As a last resort, use the slow shell script. Don't cache a
+ # value for INSTALL within a source directory, because that will
# break other packages using the cache if that directory is
- # removed, or if the path is relative.
+ # removed, or if the value is a relative name.
INSTALL=$ac_install_sh
fi
fi
-echo "$as_me:$LINENO: result: $INSTALL" >&5
-echo "${ECHO_T}$INSTALL" >&6
+{ $as_echo "$as_me:$LINENO: result: $INSTALL" >&5
+$as_echo "$INSTALL" >&6; }
# Use test -z because SunOS4 sh mishandles braces in ${var-val}.
# It thinks the first close brace ends the variable substitution.
@@ -1490,8 +2055,8 @@ test -z "$INSTALL_SCRIPT" && INSTALL_SCRIPT='${INSTALL}'
test -z "$INSTALL_DATA" && INSTALL_DATA='${INSTALL} -m 644'
-echo "$as_me:$LINENO: checking whether build environment is sane" >&5
-echo $ECHO_N "checking whether build environment is sane... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking whether build environment is sane" >&5
+$as_echo_n "checking whether build environment is sane... " >&6; }
# Just in case
sleep 1
echo timestamp > conftest.file
@@ -1514,9 +2079,9 @@ if (
# if, for instance, CONFIG_SHELL is bash and it inherits a
# broken ls alias from the environment. This has actually
# happened. Such a system could not be considered "sane".
- { { echo "$as_me:$LINENO: error: ls -t appears to fail. Make sure there is not a broken
+ { { $as_echo "$as_me:$LINENO: error: ls -t appears to fail. Make sure there is not a broken
alias in your environment" >&5
-echo "$as_me: error: ls -t appears to fail. Make sure there is not a broken
+$as_echo "$as_me: error: ls -t appears to fail. Make sure there is not a broken
alias in your environment" >&2;}
{ (exit 1); exit 1; }; }
fi
@@ -1527,26 +2092,23 @@ then
# Ok.
:
else
- { { echo "$as_me:$LINENO: error: newly created file is older than distributed files!
+ { { $as_echo "$as_me:$LINENO: error: newly created file is older than distributed files!
Check your system clock" >&5
-echo "$as_me: error: newly created file is older than distributed files!
+$as_echo "$as_me: error: newly created file is older than distributed files!
Check your system clock" >&2;}
{ (exit 1); exit 1; }; }
fi
-echo "$as_me:$LINENO: result: yes" >&5
-echo "${ECHO_T}yes" >&6
+{ $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
test "$program_prefix" != NONE &&
- program_transform_name="s,^,$program_prefix,;$program_transform_name"
+ program_transform_name="s&^&$program_prefix&;$program_transform_name"
# Use a double $ so make ignores it.
test "$program_suffix" != NONE &&
- program_transform_name="s,\$,$program_suffix,;$program_transform_name"
-# Double any \ or $. echo might interpret backslashes.
+ program_transform_name="s&\$&$program_suffix&;$program_transform_name"
+# Double any \ or $.
# By default was `s,x,x', remove it if useless.
-cat <<\_ACEOF >conftest.sed
-s/[\\$]/&&/g;s/;s,x,x,$//
-_ACEOF
-program_transform_name=`echo $program_transform_name | sed -f conftest.sed`
-rm conftest.sed
+ac_script='s/[\\$]/&&/g;s/;s,x,x,$//'
+program_transform_name=`$as_echo "$program_transform_name" | sed "$ac_script"`
# expand $ac_aux_dir to an absolute path
am_aux_dir=`cd $ac_aux_dir && pwd`
@@ -1557,8 +2119,8 @@ if eval "$MISSING --run true"; then
am_missing_run="$MISSING --run "
else
am_missing_run=
- { echo "$as_me:$LINENO: WARNING: \`missing' script is too old or missing" >&5
-echo "$as_me: WARNING: \`missing' script is too old or missing" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: \`missing' script is too old or missing" >&5
+$as_echo "$as_me: WARNING: \`missing' script is too old or missing" >&2;}
fi
if mkdir -p --version . >/dev/null 2>&1 && test ! -d ./--version; then
@@ -1598,10 +2160,10 @@ for ac_prog in gawk mawk nawk awk
do
# Extract the first word of "$ac_prog", so it can be a program name with args.
set dummy $ac_prog; ac_word=$2
-echo "$as_me:$LINENO: checking for $ac_word" >&5
-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
if test "${ac_cv_prog_AWK+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
if test -n "$AWK"; then
ac_cv_prog_AWK="$AWK" # Let the user override the test.
@@ -1612,54 +2174,58 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_AWK="$ac_prog"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
fi
done
done
+IFS=$as_save_IFS
fi
fi
AWK=$ac_cv_prog_AWK
if test -n "$AWK"; then
- echo "$as_me:$LINENO: result: $AWK" >&5
-echo "${ECHO_T}$AWK" >&6
+ { $as_echo "$as_me:$LINENO: result: $AWK" >&5
+$as_echo "$AWK" >&6; }
else
- echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
fi
+
test -n "$AWK" && break
done
-echo "$as_me:$LINENO: checking whether ${MAKE-make} sets \$(MAKE)" >&5
-echo $ECHO_N "checking whether ${MAKE-make} sets \$(MAKE)... $ECHO_C" >&6
-set dummy ${MAKE-make}; ac_make=`echo "$2" | sed 'y,:./+-,___p_,'`
-if eval "test \"\${ac_cv_prog_make_${ac_make}_set+set}\" = set"; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking whether ${MAKE-make} sets \$(MAKE)" >&5
+$as_echo_n "checking whether ${MAKE-make} sets \$(MAKE)... " >&6; }
+set x ${MAKE-make}
+ac_make=`$as_echo "$2" | sed 's/+/p/g; s/[^a-zA-Z0-9_]/_/g'`
+if { as_var=ac_cv_prog_make_${ac_make}_set; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
else
cat >conftest.make <<\_ACEOF
+SHELL = /bin/sh
all:
- @echo 'ac_maketemp="$(MAKE)"'
+ @echo '@@@%%%=$(MAKE)=@@@%%%'
_ACEOF
# GNU make sometimes prints "make[1]: Entering...", which would confuse us.
-eval `${MAKE-make} -f conftest.make 2>/dev/null | grep temp=`
-if test -n "$ac_maketemp"; then
- eval ac_cv_prog_make_${ac_make}_set=yes
-else
- eval ac_cv_prog_make_${ac_make}_set=no
-fi
+case `${MAKE-make} -f conftest.make 2>/dev/null` in
+ *@@@%%%=?*=@@@%%%*)
+ eval ac_cv_prog_make_${ac_make}_set=yes;;
+ *)
+ eval ac_cv_prog_make_${ac_make}_set=no;;
+esac
rm -f conftest.make
fi
-if eval "test \"`echo '$ac_cv_prog_make_'${ac_make}_set`\" = yes"; then
- echo "$as_me:$LINENO: result: yes" >&5
-echo "${ECHO_T}yes" >&6
+if eval test \$ac_cv_prog_make_${ac_make}_set = yes; then
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
SET_MAKE=
else
- echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
SET_MAKE="MAKE=${MAKE-make}"
fi
@@ -1675,8 +2241,8 @@ rmdir .tst 2>/dev/null
# test to see if srcdir already configured
if test "`cd $srcdir && pwd`" != "`pwd`" &&
test -f $srcdir/config.status; then
- { { echo "$as_me:$LINENO: error: source directory already configured; run \"make distclean\" there first" >&5
-echo "$as_me: error: source directory already configured; run \"make distclean\" there first" >&2;}
+ { { $as_echo "$as_me:$LINENO: error: source directory already configured; run \"make distclean\" there first" >&5
+$as_echo "$as_me: error: source directory already configured; run \"make distclean\" there first" >&2;}
{ (exit 1); exit 1; }; }
fi
@@ -1692,7 +2258,7 @@ fi
# Define the identity of the package.
PACKAGE='cufflinks'
- VERSION='2.2.0'
+ VERSION='2.2.1'
cat >>confdefs.h <<_ACEOF
@@ -1730,10 +2296,10 @@ if test "$cross_compiling" != no; then
if test -n "$ac_tool_prefix"; then
# Extract the first word of "${ac_tool_prefix}strip", so it can be a program name with args.
set dummy ${ac_tool_prefix}strip; ac_word=$2
-echo "$as_me:$LINENO: checking for $ac_word" >&5
-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
if test "${ac_cv_prog_STRIP+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
if test -n "$STRIP"; then
ac_cv_prog_STRIP="$STRIP" # Let the user override the test.
@@ -1744,34 +2310,36 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_STRIP="${ac_tool_prefix}strip"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
fi
done
done
+IFS=$as_save_IFS
fi
fi
STRIP=$ac_cv_prog_STRIP
if test -n "$STRIP"; then
- echo "$as_me:$LINENO: result: $STRIP" >&5
-echo "${ECHO_T}$STRIP" >&6
+ { $as_echo "$as_me:$LINENO: result: $STRIP" >&5
+$as_echo "$STRIP" >&6; }
else
- echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
fi
+
fi
if test -z "$ac_cv_prog_STRIP"; then
ac_ct_STRIP=$STRIP
# Extract the first word of "strip", so it can be a program name with args.
set dummy strip; ac_word=$2
-echo "$as_me:$LINENO: checking for $ac_word" >&5
-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
if test "${ac_cv_prog_ac_ct_STRIP+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
if test -n "$ac_ct_STRIP"; then
ac_cv_prog_ac_ct_STRIP="$ac_ct_STRIP" # Let the user override the test.
@@ -1782,27 +2350,37 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_ac_ct_STRIP="strip"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
fi
done
done
+IFS=$as_save_IFS
- test -z "$ac_cv_prog_ac_ct_STRIP" && ac_cv_prog_ac_ct_STRIP=":"
fi
fi
ac_ct_STRIP=$ac_cv_prog_ac_ct_STRIP
if test -n "$ac_ct_STRIP"; then
- echo "$as_me:$LINENO: result: $ac_ct_STRIP" >&5
-echo "${ECHO_T}$ac_ct_STRIP" >&6
+ { $as_echo "$as_me:$LINENO: result: $ac_ct_STRIP" >&5
+$as_echo "$ac_ct_STRIP" >&6; }
else
- echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
fi
- STRIP=$ac_ct_STRIP
+ if test "x$ac_ct_STRIP" = x; then
+ STRIP=":"
+ else
+ case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+ STRIP=$ac_ct_STRIP
+ fi
else
STRIP="$ac_cv_prog_STRIP"
fi
@@ -1843,10 +2421,10 @@ for ac_prog in gawk mawk nawk awk
do
# Extract the first word of "$ac_prog", so it can be a program name with args.
set dummy $ac_prog; ac_word=$2
-echo "$as_me:$LINENO: checking for $ac_word" >&5
-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
if test "${ac_cv_prog_AWK+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
if test -n "$AWK"; then
ac_cv_prog_AWK="$AWK" # Let the user override the test.
@@ -1857,42 +2435,48 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_AWK="$ac_prog"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
fi
done
done
+IFS=$as_save_IFS
fi
fi
AWK=$ac_cv_prog_AWK
if test -n "$AWK"; then
- echo "$as_me:$LINENO: result: $AWK" >&5
-echo "${ECHO_T}$AWK" >&6
+ { $as_echo "$as_me:$LINENO: result: $AWK" >&5
+$as_echo "$AWK" >&6; }
else
- echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
fi
+
test -n "$AWK" && break
done
-ac_ext=cc
+ac_ext=cpp
ac_cpp='$CXXCPP $CPPFLAGS'
ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
-if test -n "$ac_tool_prefix"; then
- for ac_prog in $CCC g++ c++ gpp aCC CC cxx cc++ cl FCC KCC RCC xlC_r xlC
+if test -z "$CXX"; then
+ if test -n "$CCC"; then
+ CXX=$CCC
+ else
+ if test -n "$ac_tool_prefix"; then
+ for ac_prog in g++ c++ gpp aCC CC cxx cc++ cl.exe FCC KCC RCC xlC_r xlC
do
# Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args.
set dummy $ac_tool_prefix$ac_prog; ac_word=$2
-echo "$as_me:$LINENO: checking for $ac_word" >&5
-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
if test "${ac_cv_prog_CXX+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
if test -n "$CXX"; then
ac_cv_prog_CXX="$CXX" # Let the user override the test.
@@ -1903,38 +2487,40 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_CXX="$ac_tool_prefix$ac_prog"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
fi
done
done
+IFS=$as_save_IFS
fi
fi
CXX=$ac_cv_prog_CXX
if test -n "$CXX"; then
- echo "$as_me:$LINENO: result: $CXX" >&5
-echo "${ECHO_T}$CXX" >&6
+ { $as_echo "$as_me:$LINENO: result: $CXX" >&5
+$as_echo "$CXX" >&6; }
else
- echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
fi
+
test -n "$CXX" && break
done
fi
if test -z "$CXX"; then
ac_ct_CXX=$CXX
- for ac_prog in $CCC g++ c++ gpp aCC CC cxx cc++ cl FCC KCC RCC xlC_r xlC
+ for ac_prog in g++ c++ gpp aCC CC cxx cc++ cl.exe FCC KCC RCC xlC_r xlC
do
# Extract the first word of "$ac_prog", so it can be a program name with args.
set dummy $ac_prog; ac_word=$2
-echo "$as_me:$LINENO: checking for $ac_word" >&5
-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
if test "${ac_cv_prog_ac_ct_CXX+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
if test -n "$ac_ct_CXX"; then
ac_cv_prog_ac_ct_CXX="$ac_ct_CXX" # Let the user override the test.
@@ -1945,51 +2531,81 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_ac_ct_CXX="$ac_prog"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
fi
done
done
+IFS=$as_save_IFS
fi
fi
ac_ct_CXX=$ac_cv_prog_ac_ct_CXX
if test -n "$ac_ct_CXX"; then
- echo "$as_me:$LINENO: result: $ac_ct_CXX" >&5
-echo "${ECHO_T}$ac_ct_CXX" >&6
+ { $as_echo "$as_me:$LINENO: result: $ac_ct_CXX" >&5
+$as_echo "$ac_ct_CXX" >&6; }
else
- echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
fi
+
test -n "$ac_ct_CXX" && break
done
-test -n "$ac_ct_CXX" || ac_ct_CXX="g++"
- CXX=$ac_ct_CXX
+ if test "x$ac_ct_CXX" = x; then
+ CXX="g++"
+ else
+ case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+ CXX=$ac_ct_CXX
+ fi
fi
-
+ fi
+fi
# Provide some information about the compiler.
-echo "$as_me:$LINENO:" \
- "checking for C++ compiler version" >&5
-ac_compiler=`set X $ac_compile; echo $2`
-{ (eval echo "$as_me:$LINENO: \"$ac_compiler --version </dev/null >&5\"") >&5
- (eval $ac_compiler --version </dev/null >&5) 2>&5
+$as_echo "$as_me:$LINENO: checking for C++ compiler version" >&5
+set X $ac_compile
+ac_compiler=$2
+{ (ac_try="$ac_compiler --version >&5"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compiler --version >&5") 2>&5
ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
(exit $ac_status); }
-{ (eval echo "$as_me:$LINENO: \"$ac_compiler -v </dev/null >&5\"") >&5
- (eval $ac_compiler -v </dev/null >&5) 2>&5
+{ (ac_try="$ac_compiler -v >&5"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compiler -v >&5") 2>&5
ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
(exit $ac_status); }
-{ (eval echo "$as_me:$LINENO: \"$ac_compiler -V </dev/null >&5\"") >&5
- (eval $ac_compiler -V </dev/null >&5) 2>&5
+{ (ac_try="$ac_compiler -V >&5"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compiler -V >&5") 2>&5
ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
(exit $ac_status); }
cat >conftest.$ac_ext <<_ACEOF
@@ -2008,111 +2624,150 @@ main ()
}
_ACEOF
ac_clean_files_save=$ac_clean_files
-ac_clean_files="$ac_clean_files a.out a.exe b.out"
+ac_clean_files="$ac_clean_files a.out a.out.dSYM a.exe b.out"
# Try to create an executable without -o first, disregard a.out.
# It will help us diagnose broken compilers, and finding out an intuition
# of exeext.
-echo "$as_me:$LINENO: checking for C++ compiler default output file name" >&5
-echo $ECHO_N "checking for C++ compiler default output file name... $ECHO_C" >&6
-ac_link_default=`echo "$ac_link" | sed 's/ -o *conftest[^ ]*//'`
-if { (eval echo "$as_me:$LINENO: \"$ac_link_default\"") >&5
- (eval $ac_link_default) 2>&5
+{ $as_echo "$as_me:$LINENO: checking for C++ compiler default output file name" >&5
+$as_echo_n "checking for C++ compiler default output file name... " >&6; }
+ac_link_default=`$as_echo "$ac_link" | sed 's/ -o *conftest[^ ]*//'`
+
+# The possible output files:
+ac_files="a.out conftest.exe conftest a.exe a_out.exe b.out conftest.*"
+
+ac_rmfiles=
+for ac_file in $ac_files
+do
+ case $ac_file in
+ *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) ;;
+ * ) ac_rmfiles="$ac_rmfiles $ac_file";;
+ esac
+done
+rm -f $ac_rmfiles
+
+if { (ac_try="$ac_link_default"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link_default") 2>&5
ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
(exit $ac_status); }; then
- # Find the output, starting from the most likely. This scheme is
-# not robust to junk in `.', hence go to wildcards (a.*) only as a last
-# resort.
-
-# Be careful to initialize this variable, since it used to be cached.
-# Otherwise an old cache value of `no' led to `EXEEXT = no' in a Makefile.
-ac_cv_exeext=
-# b.out is created by i960 compilers.
-for ac_file in a_out.exe a.exe conftest.exe a.out conftest a.* conftest.* b.out
+ # Autoconf-2.13 could set the ac_cv_exeext variable to `no'.
+# So ignore a value of `no', otherwise this would lead to `EXEEXT = no'
+# in a Makefile. We should not override ac_cv_exeext if it was cached,
+# so that the user can short-circuit this test for compilers unknown to
+# Autoconf.
+for ac_file in $ac_files ''
do
test -f "$ac_file" || continue
case $ac_file in
- *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.o | *.obj )
- ;;
- conftest.$ac_ext )
- # This is the source file.
+ *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj )
;;
[ab].out )
# We found the default executable, but exeext='' is most
# certainly right.
break;;
*.* )
- ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
- # FIXME: I believe we export ac_cv_exeext for Libtool,
- # but it would be cool to find out if it's true. Does anybody
- # maintain Libtool? --akim.
- export ac_cv_exeext
+ if test "${ac_cv_exeext+set}" = set && test "$ac_cv_exeext" != no;
+ then :; else
+ ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
+ fi
+ # We set ac_cv_exeext here because the later test for it is not
+ # safe: cross compilers may not add the suffix if given an `-o'
+ # argument, so we may need to know it at that point already.
+ # Even if this section looks crufty: it has the advantage of
+ # actually working.
break;;
* )
break;;
esac
done
+test "$ac_cv_exeext" = no && ac_cv_exeext=
+
else
- echo "$as_me: failed program was:" >&5
+ ac_file=''
+fi
+
+{ $as_echo "$as_me:$LINENO: result: $ac_file" >&5
+$as_echo "$ac_file" >&6; }
+if test -z "$ac_file"; then
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-{ { echo "$as_me:$LINENO: error: C++ compiler cannot create executables
+{ { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+{ { $as_echo "$as_me:$LINENO: error: C++ compiler cannot create executables
See \`config.log' for more details." >&5
-echo "$as_me: error: C++ compiler cannot create executables
+$as_echo "$as_me: error: C++ compiler cannot create executables
See \`config.log' for more details." >&2;}
- { (exit 77); exit 77; }; }
+ { (exit 77); exit 77; }; }; }
fi
ac_exeext=$ac_cv_exeext
-echo "$as_me:$LINENO: result: $ac_file" >&5
-echo "${ECHO_T}$ac_file" >&6
-# Check the compiler produces executables we can run. If not, either
+# Check that the compiler produces executables we can run. If not, either
# the compiler is broken, or we cross compile.
-echo "$as_me:$LINENO: checking whether the C++ compiler works" >&5
-echo $ECHO_N "checking whether the C++ compiler works... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking whether the C++ compiler works" >&5
+$as_echo_n "checking whether the C++ compiler works... " >&6; }
# FIXME: These cross compiler hacks should be removed for Autoconf 3.0
# If not cross compiling, check that we can run a simple program.
if test "$cross_compiling" != yes; then
if { ac_try='./$ac_file'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
+ { (case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_try") 2>&5
ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
(exit $ac_status); }; }; then
cross_compiling=no
else
if test "$cross_compiling" = maybe; then
cross_compiling=yes
else
- { { echo "$as_me:$LINENO: error: cannot run C++ compiled programs.
+ { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+{ { $as_echo "$as_me:$LINENO: error: cannot run C++ compiled programs.
If you meant to cross compile, use \`--host'.
See \`config.log' for more details." >&5
-echo "$as_me: error: cannot run C++ compiled programs.
+$as_echo "$as_me: error: cannot run C++ compiled programs.
If you meant to cross compile, use \`--host'.
See \`config.log' for more details." >&2;}
- { (exit 1); exit 1; }; }
+ { (exit 1); exit 1; }; }; }
fi
fi
fi
-echo "$as_me:$LINENO: result: yes" >&5
-echo "${ECHO_T}yes" >&6
+{ $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
-rm -f a.out a.exe conftest$ac_cv_exeext b.out
+rm -f -r a.out a.out.dSYM a.exe conftest$ac_cv_exeext b.out
ac_clean_files=$ac_clean_files_save
-# Check the compiler produces executables we can run. If not, either
+# Check that the compiler produces executables we can run. If not, either
# the compiler is broken, or we cross compile.
-echo "$as_me:$LINENO: checking whether we are cross compiling" >&5
-echo $ECHO_N "checking whether we are cross compiling... $ECHO_C" >&6
-echo "$as_me:$LINENO: result: $cross_compiling" >&5
-echo "${ECHO_T}$cross_compiling" >&6
-
-echo "$as_me:$LINENO: checking for suffix of executables" >&5
-echo $ECHO_N "checking for suffix of executables... $ECHO_C" >&6
-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
- (eval $ac_link) 2>&5
+{ $as_echo "$as_me:$LINENO: checking whether we are cross compiling" >&5
+$as_echo_n "checking whether we are cross compiling... " >&6; }
+{ $as_echo "$as_me:$LINENO: result: $cross_compiling" >&5
+$as_echo "$cross_compiling" >&6; }
+
+{ $as_echo "$as_me:$LINENO: checking for suffix of executables" >&5
+$as_echo_n "checking for suffix of executables... " >&6; }
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>&5
ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
(exit $ac_status); }; then
# If both `conftest.exe' and `conftest' are `present' (well, observable)
# catch `conftest.exe'. For instance with Cygwin, `ls conftest' will
@@ -2121,32 +2776,33 @@ if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
for ac_file in conftest.exe conftest conftest.*; do
test -f "$ac_file" || continue
case $ac_file in
- *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.o | *.obj ) ;;
+ *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) ;;
*.* ) ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
- export ac_cv_exeext
break;;
* ) break;;
esac
done
else
- { { echo "$as_me:$LINENO: error: cannot compute suffix of executables: cannot compile and link
+ { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+{ { $as_echo "$as_me:$LINENO: error: cannot compute suffix of executables: cannot compile and link
See \`config.log' for more details." >&5
-echo "$as_me: error: cannot compute suffix of executables: cannot compile and link
+$as_echo "$as_me: error: cannot compute suffix of executables: cannot compile and link
See \`config.log' for more details." >&2;}
- { (exit 1); exit 1; }; }
+ { (exit 1); exit 1; }; }; }
fi
rm -f conftest$ac_cv_exeext
-echo "$as_me:$LINENO: result: $ac_cv_exeext" >&5
-echo "${ECHO_T}$ac_cv_exeext" >&6
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_exeext" >&5
+$as_echo "$ac_cv_exeext" >&6; }
rm -f conftest.$ac_ext
EXEEXT=$ac_cv_exeext
ac_exeext=$EXEEXT
-echo "$as_me:$LINENO: checking for suffix of object files" >&5
-echo $ECHO_N "checking for suffix of object files... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for suffix of object files" >&5
+$as_echo_n "checking for suffix of object files... " >&6; }
if test "${ac_cv_objext+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
@@ -2164,39 +2820,48 @@ main ()
}
_ACEOF
rm -f conftest.o conftest.obj
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>&5
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>&5
ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
(exit $ac_status); }; then
- for ac_file in `(ls conftest.o conftest.obj; ls conftest.*) 2>/dev/null`; do
+ for ac_file in conftest.o conftest.obj conftest.*; do
+ test -f "$ac_file" || continue;
case $ac_file in
- *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg ) ;;
+ *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM ) ;;
*) ac_cv_objext=`expr "$ac_file" : '.*\.\(.*\)'`
break;;
esac
done
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-{ { echo "$as_me:$LINENO: error: cannot compute suffix of object files: cannot compile
+{ { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+{ { $as_echo "$as_me:$LINENO: error: cannot compute suffix of object files: cannot compile
See \`config.log' for more details." >&5
-echo "$as_me: error: cannot compute suffix of object files: cannot compile
+$as_echo "$as_me: error: cannot compute suffix of object files: cannot compile
See \`config.log' for more details." >&2;}
- { (exit 1); exit 1; }; }
+ { (exit 1); exit 1; }; }; }
fi
rm -f conftest.$ac_cv_objext conftest.$ac_ext
fi
-echo "$as_me:$LINENO: result: $ac_cv_objext" >&5
-echo "${ECHO_T}$ac_cv_objext" >&6
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_objext" >&5
+$as_echo "$ac_cv_objext" >&6; }
OBJEXT=$ac_cv_objext
ac_objext=$OBJEXT
-echo "$as_me:$LINENO: checking whether we are using the GNU C++ compiler" >&5
-echo $ECHO_N "checking whether we are using the GNU C++ compiler... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking whether we are using the GNU C++ compiler" >&5
+$as_echo_n "checking whether we are using the GNU C++ compiler... " >&6; }
if test "${ac_cv_cxx_compiler_gnu+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
@@ -2217,50 +2882,54 @@ main ()
}
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_cxx_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
ac_compiler_gnu=yes
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-ac_compiler_gnu=no
+ ac_compiler_gnu=no
fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
ac_cv_cxx_compiler_gnu=$ac_compiler_gnu
fi
-echo "$as_me:$LINENO: result: $ac_cv_cxx_compiler_gnu" >&5
-echo "${ECHO_T}$ac_cv_cxx_compiler_gnu" >&6
-GXX=`test $ac_compiler_gnu = yes && echo yes`
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_cxx_compiler_gnu" >&5
+$as_echo "$ac_cv_cxx_compiler_gnu" >&6; }
+if test $ac_compiler_gnu = yes; then
+ GXX=yes
+else
+ GXX=
+fi
ac_test_CXXFLAGS=${CXXFLAGS+set}
ac_save_CXXFLAGS=$CXXFLAGS
-CXXFLAGS="-g"
-echo "$as_me:$LINENO: checking whether $CXX accepts -g" >&5
-echo $ECHO_N "checking whether $CXX accepts -g... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking whether $CXX accepts -g" >&5
+$as_echo_n "checking whether $CXX accepts -g... " >&6; }
if test "${ac_cv_prog_cxx_g+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
- cat >conftest.$ac_ext <<_ACEOF
+ ac_save_cxx_werror_flag=$ac_cxx_werror_flag
+ ac_cxx_werror_flag=yes
+ ac_cv_prog_cxx_g=no
+ CXXFLAGS="-g"
+ cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
@@ -2276,159 +2945,136 @@ main ()
}
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_cxx_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
ac_cv_prog_cxx_g=yes
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-ac_cv_prog_cxx_g=no
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-fi
-echo "$as_me:$LINENO: result: $ac_cv_prog_cxx_g" >&5
-echo "${ECHO_T}$ac_cv_prog_cxx_g" >&6
-if test "$ac_test_CXXFLAGS" = set; then
- CXXFLAGS=$ac_save_CXXFLAGS
-elif test $ac_cv_prog_cxx_g = yes; then
- if test "$GXX" = yes; then
- CXXFLAGS="-g -O2"
- else
- CXXFLAGS="-g"
- fi
-else
- if test "$GXX" = yes; then
- CXXFLAGS="-O2"
- else
- CXXFLAGS=
- fi
-fi
-for ac_declaration in \
- '' \
- 'extern "C" void std::exit (int) throw (); using std::exit;' \
- 'extern "C" void std::exit (int); using std::exit;' \
- 'extern "C" void exit (int) throw ();' \
- 'extern "C" void exit (int);' \
- 'void exit (int);'
-do
- cat >conftest.$ac_ext <<_ACEOF
+ CXXFLAGS=""
+ cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h. */
-$ac_declaration
-#include <stdlib.h>
+
int
main ()
{
-exit (42);
+
;
return 0;
}
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_cxx_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
:
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-continue
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
- cat >conftest.$ac_ext <<_ACEOF
+ ac_cxx_werror_flag=$ac_save_cxx_werror_flag
+ CXXFLAGS="-g"
+ cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h. */
-$ac_declaration
+
int
main ()
{
-exit (42);
+
;
return 0;
}
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_cxx_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
- break
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_cv_prog_cxx_g=yes
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
+
fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-done
-rm -f conftest*
-if test -n "$ac_declaration"; then
- echo '#ifdef __cplusplus' >>confdefs.h
- echo $ac_declaration >>confdefs.h
- echo '#endif' >>confdefs.h
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
fi
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ ac_cxx_werror_flag=$ac_save_cxx_werror_flag
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_prog_cxx_g" >&5
+$as_echo "$ac_cv_prog_cxx_g" >&6; }
+if test "$ac_test_CXXFLAGS" = set; then
+ CXXFLAGS=$ac_save_CXXFLAGS
+elif test $ac_cv_prog_cxx_g = yes; then
+ if test "$GXX" = yes; then
+ CXXFLAGS="-g -O2"
+ else
+ CXXFLAGS="-g"
+ fi
+else
+ if test "$GXX" = yes; then
+ CXXFLAGS="-O2"
+ else
+ CXXFLAGS=
+ fi
+fi
ac_ext=c
ac_cpp='$CPP $CPPFLAGS'
ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
@@ -2436,7 +3082,7 @@ ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $
ac_compiler_gnu=$ac_cv_c_compiler_gnu
DEPDIR="${am__leading_dot}deps"
- ac_config_commands="$ac_config_commands depfiles"
+ac_config_commands="$ac_config_commands depfiles"
am_make=${MAKE-make}
@@ -2446,8 +3092,8 @@ am__doit:
.PHONY: am__doit
END
# If we don't find an include directive, just comment out the code.
-echo "$as_me:$LINENO: checking for style of include used by $am_make" >&5
-echo $ECHO_N "checking for style of include used by $am_make... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for style of include used by $am_make" >&5
+$as_echo_n "checking for style of include used by $am_make... " >&6; }
am__include="#"
am__quote=
_am_result=none
@@ -2474,15 +3120,15 @@ if test "$am__include" = "#"; then
fi
-echo "$as_me:$LINENO: result: $_am_result" >&5
-echo "${ECHO_T}$_am_result" >&6
+{ $as_echo "$as_me:$LINENO: result: $_am_result" >&5
+$as_echo "$_am_result" >&6; }
rm -f confinc confmf
-# Check whether --enable-dependency-tracking or --disable-dependency-tracking was given.
+# Check whether --enable-dependency-tracking was given.
if test "${enable_dependency_tracking+set}" = set; then
- enableval="$enable_dependency_tracking"
+ enableval=$enable_dependency_tracking;
+fi
-fi;
if test "x$enable_dependency_tracking" != xno; then
am_depcomp="$ac_aux_dir/depcomp"
AMDEPBACKSLASH='\'
@@ -2502,10 +3148,10 @@ fi
depcc="$CXX" am_compiler_list=
-echo "$as_me:$LINENO: checking dependency style of $depcc" >&5
-echo $ECHO_N "checking dependency style of $depcc... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking dependency style of $depcc" >&5
+$as_echo_n "checking dependency style of $depcc... " >&6; }
if test "${am_cv_CXX_dependencies_compiler_type+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
if test -z "$AMDEP_TRUE" && test -f "$am_depcomp"; then
# We make a subdir and do the tests there. Otherwise we can end up
@@ -2592,8 +3238,8 @@ else
fi
fi
-echo "$as_me:$LINENO: result: $am_cv_CXX_dependencies_compiler_type" >&5
-echo "${ECHO_T}$am_cv_CXX_dependencies_compiler_type" >&6
+{ $as_echo "$as_me:$LINENO: result: $am_cv_CXX_dependencies_compiler_type" >&5
+$as_echo "$am_cv_CXX_dependencies_compiler_type" >&6; }
CXXDEPMODE=depmode=$am_cv_CXX_dependencies_compiler_type
@@ -2617,10 +3263,10 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu
if test -n "$ac_tool_prefix"; then
# Extract the first word of "${ac_tool_prefix}gcc", so it can be a program name with args.
set dummy ${ac_tool_prefix}gcc; ac_word=$2
-echo "$as_me:$LINENO: checking for $ac_word" >&5
-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
if test "${ac_cv_prog_CC+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
if test -n "$CC"; then
ac_cv_prog_CC="$CC" # Let the user override the test.
@@ -2631,34 +3277,36 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_CC="${ac_tool_prefix}gcc"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
fi
done
done
+IFS=$as_save_IFS
fi
fi
CC=$ac_cv_prog_CC
if test -n "$CC"; then
- echo "$as_me:$LINENO: result: $CC" >&5
-echo "${ECHO_T}$CC" >&6
+ { $as_echo "$as_me:$LINENO: result: $CC" >&5
+$as_echo "$CC" >&6; }
else
- echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
fi
+
fi
if test -z "$ac_cv_prog_CC"; then
ac_ct_CC=$CC
# Extract the first word of "gcc", so it can be a program name with args.
set dummy gcc; ac_word=$2
-echo "$as_me:$LINENO: checking for $ac_word" >&5
-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
if test "${ac_cv_prog_ac_ct_CC+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
if test -n "$ac_ct_CC"; then
ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test.
@@ -2669,38 +3317,49 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_ac_ct_CC="gcc"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
fi
done
done
+IFS=$as_save_IFS
fi
fi
ac_ct_CC=$ac_cv_prog_ac_ct_CC
if test -n "$ac_ct_CC"; then
- echo "$as_me:$LINENO: result: $ac_ct_CC" >&5
-echo "${ECHO_T}$ac_ct_CC" >&6
+ { $as_echo "$as_me:$LINENO: result: $ac_ct_CC" >&5
+$as_echo "$ac_ct_CC" >&6; }
else
- echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
fi
- CC=$ac_ct_CC
+ if test "x$ac_ct_CC" = x; then
+ CC=""
+ else
+ case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+ CC=$ac_ct_CC
+ fi
else
CC="$ac_cv_prog_CC"
fi
if test -z "$CC"; then
- if test -n "$ac_tool_prefix"; then
- # Extract the first word of "${ac_tool_prefix}cc", so it can be a program name with args.
+ if test -n "$ac_tool_prefix"; then
+ # Extract the first word of "${ac_tool_prefix}cc", so it can be a program name with args.
set dummy ${ac_tool_prefix}cc; ac_word=$2
-echo "$as_me:$LINENO: checking for $ac_word" >&5
-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
if test "${ac_cv_prog_CC+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
if test -n "$CC"; then
ac_cv_prog_CC="$CC" # Let the user override the test.
@@ -2711,76 +3370,36 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_CC="${ac_tool_prefix}cc"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
fi
done
done
+IFS=$as_save_IFS
fi
fi
CC=$ac_cv_prog_CC
if test -n "$CC"; then
- echo "$as_me:$LINENO: result: $CC" >&5
-echo "${ECHO_T}$CC" >&6
-else
- echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
-fi
-
-fi
-if test -z "$ac_cv_prog_CC"; then
- ac_ct_CC=$CC
- # Extract the first word of "cc", so it can be a program name with args.
-set dummy cc; ac_word=$2
-echo "$as_me:$LINENO: checking for $ac_word" >&5
-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-if test "${ac_cv_prog_ac_ct_CC+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
-else
- if test -n "$ac_ct_CC"; then
- ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test.
-else
-as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-for as_dir in $PATH
-do
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
- ac_cv_prog_ac_ct_CC="cc"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
- break 2
- fi
-done
-done
-
-fi
-fi
-ac_ct_CC=$ac_cv_prog_ac_ct_CC
-if test -n "$ac_ct_CC"; then
- echo "$as_me:$LINENO: result: $ac_ct_CC" >&5
-echo "${ECHO_T}$ac_ct_CC" >&6
+ { $as_echo "$as_me:$LINENO: result: $CC" >&5
+$as_echo "$CC" >&6; }
else
- echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
fi
- CC=$ac_ct_CC
-else
- CC="$ac_cv_prog_CC"
-fi
+ fi
fi
if test -z "$CC"; then
# Extract the first word of "cc", so it can be a program name with args.
set dummy cc; ac_word=$2
-echo "$as_me:$LINENO: checking for $ac_word" >&5
-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
if test "${ac_cv_prog_CC+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
if test -n "$CC"; then
ac_cv_prog_CC="$CC" # Let the user override the test.
@@ -2792,17 +3411,18 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
if test "$as_dir/$ac_word$ac_exec_ext" = "/usr/ucb/cc"; then
ac_prog_rejected=yes
continue
fi
ac_cv_prog_CC="cc"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
fi
done
done
+IFS=$as_save_IFS
if test $ac_prog_rejected = yes; then
# We found a bogon in the path, so make sure we never use it.
@@ -2820,24 +3440,25 @@ fi
fi
CC=$ac_cv_prog_CC
if test -n "$CC"; then
- echo "$as_me:$LINENO: result: $CC" >&5
-echo "${ECHO_T}$CC" >&6
+ { $as_echo "$as_me:$LINENO: result: $CC" >&5
+$as_echo "$CC" >&6; }
else
- echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
fi
+
fi
if test -z "$CC"; then
if test -n "$ac_tool_prefix"; then
- for ac_prog in cl
+ for ac_prog in cl.exe
do
# Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args.
set dummy $ac_tool_prefix$ac_prog; ac_word=$2
-echo "$as_me:$LINENO: checking for $ac_word" >&5
-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
if test "${ac_cv_prog_CC+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
if test -n "$CC"; then
ac_cv_prog_CC="$CC" # Let the user override the test.
@@ -2848,38 +3469,40 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_CC="$ac_tool_prefix$ac_prog"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
fi
done
done
+IFS=$as_save_IFS
fi
fi
CC=$ac_cv_prog_CC
if test -n "$CC"; then
- echo "$as_me:$LINENO: result: $CC" >&5
-echo "${ECHO_T}$CC" >&6
+ { $as_echo "$as_me:$LINENO: result: $CC" >&5
+$as_echo "$CC" >&6; }
else
- echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
fi
+
test -n "$CC" && break
done
fi
if test -z "$CC"; then
ac_ct_CC=$CC
- for ac_prog in cl
+ for ac_prog in cl.exe
do
# Extract the first word of "$ac_prog", so it can be a program name with args.
set dummy $ac_prog; ac_word=$2
-echo "$as_me:$LINENO: checking for $ac_word" >&5
-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
if test "${ac_cv_prog_ac_ct_CC+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
if test -n "$ac_ct_CC"; then
ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test.
@@ -2890,64 +3513,96 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_ac_ct_CC="$ac_prog"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
fi
done
done
+IFS=$as_save_IFS
fi
fi
ac_ct_CC=$ac_cv_prog_ac_ct_CC
if test -n "$ac_ct_CC"; then
- echo "$as_me:$LINENO: result: $ac_ct_CC" >&5
-echo "${ECHO_T}$ac_ct_CC" >&6
+ { $as_echo "$as_me:$LINENO: result: $ac_ct_CC" >&5
+$as_echo "$ac_ct_CC" >&6; }
else
- echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
fi
+
test -n "$ac_ct_CC" && break
done
- CC=$ac_ct_CC
+ if test "x$ac_ct_CC" = x; then
+ CC=""
+ else
+ case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+ CC=$ac_ct_CC
+ fi
fi
fi
-test -z "$CC" && { { echo "$as_me:$LINENO: error: no acceptable C compiler found in \$PATH
+test -z "$CC" && { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+{ { $as_echo "$as_me:$LINENO: error: no acceptable C compiler found in \$PATH
See \`config.log' for more details." >&5
-echo "$as_me: error: no acceptable C compiler found in \$PATH
+$as_echo "$as_me: error: no acceptable C compiler found in \$PATH
See \`config.log' for more details." >&2;}
- { (exit 1); exit 1; }; }
+ { (exit 1); exit 1; }; }; }
# Provide some information about the compiler.
-echo "$as_me:$LINENO:" \
- "checking for C compiler version" >&5
-ac_compiler=`set X $ac_compile; echo $2`
-{ (eval echo "$as_me:$LINENO: \"$ac_compiler --version </dev/null >&5\"") >&5
- (eval $ac_compiler --version </dev/null >&5) 2>&5
+$as_echo "$as_me:$LINENO: checking for C compiler version" >&5
+set X $ac_compile
+ac_compiler=$2
+{ (ac_try="$ac_compiler --version >&5"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compiler --version >&5") 2>&5
ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
(exit $ac_status); }
-{ (eval echo "$as_me:$LINENO: \"$ac_compiler -v </dev/null >&5\"") >&5
- (eval $ac_compiler -v </dev/null >&5) 2>&5
+{ (ac_try="$ac_compiler -v >&5"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compiler -v >&5") 2>&5
ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
(exit $ac_status); }
-{ (eval echo "$as_me:$LINENO: \"$ac_compiler -V </dev/null >&5\"") >&5
- (eval $ac_compiler -V </dev/null >&5) 2>&5
+{ (ac_try="$ac_compiler -V >&5"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compiler -V >&5") 2>&5
ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
(exit $ac_status); }
-echo "$as_me:$LINENO: checking whether we are using the GNU C compiler" >&5
-echo $ECHO_N "checking whether we are using the GNU C compiler... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking whether we are using the GNU C compiler" >&5
+$as_echo_n "checking whether we are using the GNU C compiler... " >&6; }
if test "${ac_cv_c_compiler_gnu+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
@@ -2968,50 +3623,54 @@ main ()
}
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
ac_compiler_gnu=yes
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-ac_compiler_gnu=no
+ ac_compiler_gnu=no
fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
ac_cv_c_compiler_gnu=$ac_compiler_gnu
fi
-echo "$as_me:$LINENO: result: $ac_cv_c_compiler_gnu" >&5
-echo "${ECHO_T}$ac_cv_c_compiler_gnu" >&6
-GCC=`test $ac_compiler_gnu = yes && echo yes`
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_c_compiler_gnu" >&5
+$as_echo "$ac_cv_c_compiler_gnu" >&6; }
+if test $ac_compiler_gnu = yes; then
+ GCC=yes
+else
+ GCC=
+fi
ac_test_CFLAGS=${CFLAGS+set}
ac_save_CFLAGS=$CFLAGS
-CFLAGS="-g"
-echo "$as_me:$LINENO: checking whether $CC accepts -g" >&5
-echo $ECHO_N "checking whether $CC accepts -g... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking whether $CC accepts -g" >&5
+$as_echo_n "checking whether $CC accepts -g... " >&6; }
if test "${ac_cv_prog_cc_g+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
- cat >conftest.$ac_ext <<_ACEOF
+ ac_save_c_werror_flag=$ac_c_werror_flag
+ ac_c_werror_flag=yes
+ ac_cv_prog_cc_g=no
+ CFLAGS="-g"
+ cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
@@ -3027,59 +3686,142 @@ main ()
}
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
ac_cv_prog_cc_g=yes
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-ac_cv_prog_cc_g=no
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-fi
-echo "$as_me:$LINENO: result: $ac_cv_prog_cc_g" >&5
-echo "${ECHO_T}$ac_cv_prog_cc_g" >&6
-if test "$ac_test_CFLAGS" = set; then
- CFLAGS=$ac_save_CFLAGS
-elif test $ac_cv_prog_cc_g = yes; then
- if test "$GCC" = yes; then
- CFLAGS="-g -O2"
- else
- CFLAGS="-g"
- fi
-else
- if test "$GCC" = yes; then
- CFLAGS="-O2"
- else
- CFLAGS=
+ CFLAGS=""
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ :
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_c_werror_flag=$ac_save_c_werror_flag
+ CFLAGS="-g"
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_cv_prog_cc_g=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ ac_c_werror_flag=$ac_save_c_werror_flag
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_prog_cc_g" >&5
+$as_echo "$ac_cv_prog_cc_g" >&6; }
+if test "$ac_test_CFLAGS" = set; then
+ CFLAGS=$ac_save_CFLAGS
+elif test $ac_cv_prog_cc_g = yes; then
+ if test "$GCC" = yes; then
+ CFLAGS="-g -O2"
+ else
+ CFLAGS="-g"
+ fi
+else
+ if test "$GCC" = yes; then
+ CFLAGS="-O2"
+ else
+ CFLAGS=
fi
fi
-echo "$as_me:$LINENO: checking for $CC option to accept ANSI C" >&5
-echo $ECHO_N "checking for $CC option to accept ANSI C... $ECHO_C" >&6
-if test "${ac_cv_prog_cc_stdc+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for $CC option to accept ISO C89" >&5
+$as_echo_n "checking for $CC option to accept ISO C89... " >&6; }
+if test "${ac_cv_prog_cc_c89+set}" = set; then
+ $as_echo_n "(cached) " >&6
else
- ac_cv_prog_cc_stdc=no
+ ac_cv_prog_cc_c89=no
ac_save_CC=$CC
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
@@ -3113,12 +3855,17 @@ static char *f (char * (*g) (char **, int), char **p, ...)
/* OSF 4.0 Compaq cc is some sort of almost-ANSI by default. It has
function prototypes and stuff, but not '\xHH' hex character constants.
These don't provoke an error unfortunately, instead are silently treated
- as 'x'. The following induces an error, until -std1 is added to get
+ as 'x'. The following induces an error, until -std is added to get
proper ANSI mode. Curiously '\x00'!='x' always comes out true, for an
array size at least. It's necessary to write '\x00'==0 to get something
- that's true only with -std1. */
+ that's true only with -std. */
int osf4_cc_array ['\x00' == 0 ? 1 : -1];
+/* IBM C 6 for AIX is almost-ANSI by default, but it replaces macro parameters
+ inside strings and character constants. */
+#define FOO(x) 'x'
+int xlc6_cc_array[FOO(a) == 'x' ? 1 : -1];
+
int test (int i, double x);
struct s1 {int (*f) (int a);};
struct s2 {int (*f) (double a);};
@@ -3133,205 +3880,58 @@ return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1];
return 0;
}
_ACEOF
-# Don't try gcc -ansi; that turns off useful extensions and
-# breaks some systems' header files.
-# AIX -qlanglvl=ansi
-# Ultrix and OSF/1 -std1
-# HP-UX 10.20 and later -Ae
-# HP-UX older versions -Aa -D_HPUX_SOURCE
-# SVR4 -Xc -D__EXTENSIONS__
-for ac_arg in "" -qlanglvl=ansi -std1 -Ae "-Aa -D_HPUX_SOURCE" "-Xc -D__EXTENSIONS__"
+for ac_arg in '' -qlanglvl=extc89 -qlanglvl=ansi -std \
+ -Ae "-Aa -D_HPUX_SOURCE" "-Xc -D__EXTENSIONS__"
do
CC="$ac_save_CC $ac_arg"
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
- ac_cv_prog_cc_stdc=$ac_arg
-break
-else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_cv_prog_cc_c89=$ac_arg
+else
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
+
fi
-rm -f conftest.err conftest.$ac_objext
+
+rm -f core conftest.err conftest.$ac_objext
+ test "x$ac_cv_prog_cc_c89" != "xno" && break
done
-rm -f conftest.$ac_ext conftest.$ac_objext
+rm -f conftest.$ac_ext
CC=$ac_save_CC
fi
-
-case "x$ac_cv_prog_cc_stdc" in
- x|xno)
- echo "$as_me:$LINENO: result: none needed" >&5
-echo "${ECHO_T}none needed" >&6 ;;
+# AC_CACHE_VAL
+case "x$ac_cv_prog_cc_c89" in
+ x)
+ { $as_echo "$as_me:$LINENO: result: none needed" >&5
+$as_echo "none needed" >&6; } ;;
+ xno)
+ { $as_echo "$as_me:$LINENO: result: unsupported" >&5
+$as_echo "unsupported" >&6; } ;;
*)
- echo "$as_me:$LINENO: result: $ac_cv_prog_cc_stdc" >&5
-echo "${ECHO_T}$ac_cv_prog_cc_stdc" >&6
- CC="$CC $ac_cv_prog_cc_stdc" ;;
+ CC="$CC $ac_cv_prog_cc_c89"
+ { $as_echo "$as_me:$LINENO: result: $ac_cv_prog_cc_c89" >&5
+$as_echo "$ac_cv_prog_cc_c89" >&6; } ;;
esac
-# Some people use a C++ compiler to compile C. Since we use `exit',
-# in C++ we need to declare it. In case someone uses the same compiler
-# for both compiling C and C++ we need to have the C++ compiler decide
-# the declaration of exit, since it's the most demanding environment.
-cat >conftest.$ac_ext <<_ACEOF
-#ifndef __cplusplus
- choke me
-#endif
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
- for ac_declaration in \
- '' \
- 'extern "C" void std::exit (int) throw (); using std::exit;' \
- 'extern "C" void std::exit (int); using std::exit;' \
- 'extern "C" void exit (int) throw ();' \
- 'extern "C" void exit (int);' \
- 'void exit (int);'
-do
- cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h. */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h. */
-$ac_declaration
-#include <stdlib.h>
-int
-main ()
-{
-exit (42);
- ;
- return 0;
-}
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
- :
-else
- echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-continue
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
- cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h. */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h. */
-$ac_declaration
-int
-main ()
-{
-exit (42);
- ;
- return 0;
-}
-_ACEOF
-rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
- break
-else
- echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-done
-rm -f conftest*
-if test -n "$ac_declaration"; then
- echo '#ifdef __cplusplus' >>confdefs.h
- echo $ac_declaration >>confdefs.h
- echo '#endif' >>confdefs.h
-fi
-
-else
- echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
ac_ext=c
ac_cpp='$CPP $CPPFLAGS'
ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
@@ -3340,10 +3940,10 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu
depcc="$CC" am_compiler_list=
-echo "$as_me:$LINENO: checking dependency style of $depcc" >&5
-echo $ECHO_N "checking dependency style of $depcc... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking dependency style of $depcc" >&5
+$as_echo_n "checking dependency style of $depcc... " >&6; }
if test "${am_cv_CC_dependencies_compiler_type+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
if test -z "$AMDEP_TRUE" && test -f "$am_depcomp"; then
# We make a subdir and do the tests there. Otherwise we can end up
@@ -3430,8 +4030,8 @@ else
fi
fi
-echo "$as_me:$LINENO: result: $am_cv_CC_dependencies_compiler_type" >&5
-echo "${ECHO_T}$am_cv_CC_dependencies_compiler_type" >&6
+{ $as_echo "$as_me:$LINENO: result: $am_cv_CC_dependencies_compiler_type" >&5
+$as_echo "$am_cv_CC_dependencies_compiler_type" >&6; }
CCDEPMODE=depmode=$am_cv_CC_dependencies_compiler_type
@@ -3447,42 +4047,44 @@ else
fi
-echo "$as_me:$LINENO: checking whether ${MAKE-make} sets \$(MAKE)" >&5
-echo $ECHO_N "checking whether ${MAKE-make} sets \$(MAKE)... $ECHO_C" >&6
-set dummy ${MAKE-make}; ac_make=`echo "$2" | sed 'y,:./+-,___p_,'`
-if eval "test \"\${ac_cv_prog_make_${ac_make}_set+set}\" = set"; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking whether ${MAKE-make} sets \$(MAKE)" >&5
+$as_echo_n "checking whether ${MAKE-make} sets \$(MAKE)... " >&6; }
+set x ${MAKE-make}
+ac_make=`$as_echo "$2" | sed 's/+/p/g; s/[^a-zA-Z0-9_]/_/g'`
+if { as_var=ac_cv_prog_make_${ac_make}_set; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
else
cat >conftest.make <<\_ACEOF
+SHELL = /bin/sh
all:
- @echo 'ac_maketemp="$(MAKE)"'
+ @echo '@@@%%%=$(MAKE)=@@@%%%'
_ACEOF
# GNU make sometimes prints "make[1]: Entering...", which would confuse us.
-eval `${MAKE-make} -f conftest.make 2>/dev/null | grep temp=`
-if test -n "$ac_maketemp"; then
- eval ac_cv_prog_make_${ac_make}_set=yes
-else
- eval ac_cv_prog_make_${ac_make}_set=no
-fi
+case `${MAKE-make} -f conftest.make 2>/dev/null` in
+ *@@@%%%=?*=@@@%%%*)
+ eval ac_cv_prog_make_${ac_make}_set=yes;;
+ *)
+ eval ac_cv_prog_make_${ac_make}_set=no;;
+esac
rm -f conftest.make
fi
-if eval "test \"`echo '$ac_cv_prog_make_'${ac_make}_set`\" = yes"; then
- echo "$as_me:$LINENO: result: yes" >&5
-echo "${ECHO_T}yes" >&6
+if eval test \$ac_cv_prog_make_${ac_make}_set = yes; then
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
SET_MAKE=
else
- echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
SET_MAKE="MAKE=${MAKE-make}"
fi
if test -n "$ac_tool_prefix"; then
# Extract the first word of "${ac_tool_prefix}ranlib", so it can be a program name with args.
set dummy ${ac_tool_prefix}ranlib; ac_word=$2
-echo "$as_me:$LINENO: checking for $ac_word" >&5
-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
if test "${ac_cv_prog_RANLIB+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
if test -n "$RANLIB"; then
ac_cv_prog_RANLIB="$RANLIB" # Let the user override the test.
@@ -3493,34 +4095,36 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_RANLIB="${ac_tool_prefix}ranlib"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
fi
done
done
+IFS=$as_save_IFS
fi
fi
RANLIB=$ac_cv_prog_RANLIB
if test -n "$RANLIB"; then
- echo "$as_me:$LINENO: result: $RANLIB" >&5
-echo "${ECHO_T}$RANLIB" >&6
+ { $as_echo "$as_me:$LINENO: result: $RANLIB" >&5
+$as_echo "$RANLIB" >&6; }
else
- echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
fi
+
fi
if test -z "$ac_cv_prog_RANLIB"; then
ac_ct_RANLIB=$RANLIB
# Extract the first word of "ranlib", so it can be a program name with args.
set dummy ranlib; ac_word=$2
-echo "$as_me:$LINENO: checking for $ac_word" >&5
-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
if test "${ac_cv_prog_ac_ct_RANLIB+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
if test -n "$ac_ct_RANLIB"; then
ac_cv_prog_ac_ct_RANLIB="$ac_ct_RANLIB" # Let the user override the test.
@@ -3531,27 +4135,37 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_ac_ct_RANLIB="ranlib"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
fi
done
done
+IFS=$as_save_IFS
- test -z "$ac_cv_prog_ac_ct_RANLIB" && ac_cv_prog_ac_ct_RANLIB=":"
fi
fi
ac_ct_RANLIB=$ac_cv_prog_ac_ct_RANLIB
if test -n "$ac_ct_RANLIB"; then
- echo "$as_me:$LINENO: result: $ac_ct_RANLIB" >&5
-echo "${ECHO_T}$ac_ct_RANLIB" >&6
+ { $as_echo "$as_me:$LINENO: result: $ac_ct_RANLIB" >&5
+$as_echo "$ac_ct_RANLIB" >&6; }
else
- echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
fi
- RANLIB=$ac_ct_RANLIB
+ if test "x$ac_ct_RANLIB" = x; then
+ RANLIB=":"
+ else
+ case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+ RANLIB=$ac_ct_RANLIB
+ fi
else
RANLIB="$ac_cv_prog_RANLIB"
fi
@@ -3569,11 +4183,12 @@ fi
# SVR4 /usr/ucb/install, which tries to use the nonexistent group "staff"
# OS/2's system install, which has a completely different semantic
# ./install, which can be erroneously created by make from ./install.sh.
-echo "$as_me:$LINENO: checking for a BSD-compatible install" >&5
-echo $ECHO_N "checking for a BSD-compatible install... $ECHO_C" >&6
+# Reject install programs that cannot install multiple files.
+{ $as_echo "$as_me:$LINENO: checking for a BSD-compatible install" >&5
+$as_echo_n "checking for a BSD-compatible install... " >&6; }
if test -z "$INSTALL"; then
if test "${ac_cv_path_install+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
@@ -3592,7 +4207,7 @@ case $as_dir/ in
# by default.
for ac_prog in ginstall scoinst install; do
for ac_exec_ext in '' $ac_executable_extensions; do
- if $as_executable_p "$as_dir/$ac_prog$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_prog$ac_exec_ext" && $as_test_x "$as_dir/$ac_prog$ac_exec_ext"; }; then
if test $ac_prog = install &&
grep dspmsg "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then
# AIX install. It has an incompatible calling convention.
@@ -3602,30 +4217,43 @@ case $as_dir/ in
# program-specific install script used by HP pwplus--don't use.
:
else
- ac_cv_path_install="$as_dir/$ac_prog$ac_exec_ext -c"
- break 3
+ rm -rf conftest.one conftest.two conftest.dir
+ echo one > conftest.one
+ echo two > conftest.two
+ mkdir conftest.dir
+ if "$as_dir/$ac_prog$ac_exec_ext" -c conftest.one conftest.two "`pwd`/conftest.dir" &&
+ test -s conftest.one && test -s conftest.two &&
+ test -s conftest.dir/conftest.one &&
+ test -s conftest.dir/conftest.two
+ then
+ ac_cv_path_install="$as_dir/$ac_prog$ac_exec_ext -c"
+ break 3
+ fi
fi
fi
done
done
;;
esac
+
done
+IFS=$as_save_IFS
+rm -rf conftest.one conftest.two conftest.dir
fi
if test "${ac_cv_path_install+set}" = set; then
INSTALL=$ac_cv_path_install
else
- # As a last resort, use the slow shell script. We don't cache a
- # path for INSTALL within a source directory, because that will
+ # As a last resort, use the slow shell script. Don't cache a
+ # value for INSTALL within a source directory, because that will
# break other packages using the cache if that directory is
- # removed, or if the path is relative.
+ # removed, or if the value is a relative name.
INSTALL=$ac_install_sh
fi
fi
-echo "$as_me:$LINENO: result: $INSTALL" >&5
-echo "${ECHO_T}$INSTALL" >&6
+{ $as_echo "$as_me:$LINENO: result: $INSTALL" >&5
+$as_echo "$INSTALL" >&6; }
# Use test -z because SunOS4 sh mishandles braces in ${var-val}.
# It thinks the first close brace ends the variable substitution.
@@ -3642,8 +4270,8 @@ test -z "$INSTALL_DATA" && INSTALL_DATA='${INSTALL} -m 644'
if test -n "$PYTHON"; then
# If the user set $PYTHON, use it and don't search something else.
- echo "$as_me:$LINENO: checking whether $PYTHON version >= 2.4" >&5
-echo $ECHO_N "checking whether $PYTHON version >= 2.4... $ECHO_C" >&6
+ { $as_echo "$as_me:$LINENO: checking whether $PYTHON version >= 2.4" >&5
+$as_echo_n "checking whether $PYTHON version >= 2.4... " >&6; }
prog="import sys, string
# split strings by '.' and convert to numeric. Append some zeros
# because we need at least 4 digits for the hex conversion.
@@ -3656,11 +4284,11 @@ sys.exit(sys.hexversion < minverhex)"
ac_status=$?
echo "$as_me:$LINENO: \$? = $ac_status" >&5
(exit $ac_status); }; then
- echo "$as_me:$LINENO: result: yes" >&5
-echo "${ECHO_T}yes" >&6
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
else
- { { echo "$as_me:$LINENO: error: too old" >&5
-echo "$as_me: error: too old" >&2;}
+ { { $as_echo "$as_me:$LINENO: error: too old" >&5
+$as_echo "$as_me: error: too old" >&2;}
{ (exit 1); exit 1; }; }
fi
@@ -3668,10 +4296,10 @@ fi
else
# Otherwise, try each interpreter until we find one that satisfies
# VERSION.
- echo "$as_me:$LINENO: checking for a Python interpreter with version >= 2.4" >&5
-echo $ECHO_N "checking for a Python interpreter with version >= 2.4... $ECHO_C" >&6
+ { $as_echo "$as_me:$LINENO: checking for a Python interpreter with version >= 2.4" >&5
+$as_echo_n "checking for a Python interpreter with version >= 2.4... " >&6; }
if test "${am_cv_pathless_PYTHON+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
for am_cv_pathless_PYTHON in python python2 python2.5 python2.4 python2.3 python2.2 python2.1 python2.0 python1.6 python1.5 none; do
@@ -3693,18 +4321,18 @@ fi
done
fi
-echo "$as_me:$LINENO: result: $am_cv_pathless_PYTHON" >&5
-echo "${ECHO_T}$am_cv_pathless_PYTHON" >&6
+{ $as_echo "$as_me:$LINENO: result: $am_cv_pathless_PYTHON" >&5
+$as_echo "$am_cv_pathless_PYTHON" >&6; }
# Set $PYTHON to the absolute path of $am_cv_pathless_PYTHON.
if test "$am_cv_pathless_PYTHON" = none; then
PYTHON=:
else
# Extract the first word of "$am_cv_pathless_PYTHON", so it can be a program name with args.
set dummy $am_cv_pathless_PYTHON; ac_word=$2
-echo "$as_me:$LINENO: checking for $ac_word" >&5
-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
if test "${ac_cv_path_PYTHON+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
case $PYTHON in
[\\/]* | ?:[\\/]*)
@@ -3717,48 +4345,49 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_path_PYTHON="$as_dir/$ac_word$ac_exec_ext"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
fi
done
done
+IFS=$as_save_IFS
;;
esac
fi
PYTHON=$ac_cv_path_PYTHON
-
if test -n "$PYTHON"; then
- echo "$as_me:$LINENO: result: $PYTHON" >&5
-echo "${ECHO_T}$PYTHON" >&6
+ { $as_echo "$as_me:$LINENO: result: $PYTHON" >&5
+$as_echo "$PYTHON" >&6; }
else
- echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
fi
+
fi
am_display_PYTHON=$am_cv_pathless_PYTHON
fi
if test "$PYTHON" = :; then
- { { echo "$as_me:$LINENO: error: no suitable Python interpreter found" >&5
-echo "$as_me: error: no suitable Python interpreter found" >&2;}
+ { { $as_echo "$as_me:$LINENO: error: no suitable Python interpreter found" >&5
+$as_echo "$as_me: error: no suitable Python interpreter found" >&2;}
{ (exit 1); exit 1; }; }
else
- echo "$as_me:$LINENO: checking for $am_display_PYTHON version" >&5
-echo $ECHO_N "checking for $am_display_PYTHON version... $ECHO_C" >&6
+ { $as_echo "$as_me:$LINENO: checking for $am_display_PYTHON version" >&5
+$as_echo_n "checking for $am_display_PYTHON version... " >&6; }
if test "${am_cv_python_version+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
am_cv_python_version=`$PYTHON -c "import sys; print sys.version[:3]"`
fi
-echo "$as_me:$LINENO: result: $am_cv_python_version" >&5
-echo "${ECHO_T}$am_cv_python_version" >&6
+{ $as_echo "$as_me:$LINENO: result: $am_cv_python_version" >&5
+$as_echo "$am_cv_python_version" >&6; }
PYTHON_VERSION=$am_cv_python_version
@@ -3769,30 +4398,30 @@ echo "${ECHO_T}$am_cv_python_version" >&6
- echo "$as_me:$LINENO: checking for $am_display_PYTHON platform" >&5
-echo $ECHO_N "checking for $am_display_PYTHON platform... $ECHO_C" >&6
+ { $as_echo "$as_me:$LINENO: checking for $am_display_PYTHON platform" >&5
+$as_echo_n "checking for $am_display_PYTHON platform... " >&6; }
if test "${am_cv_python_platform+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
am_cv_python_platform=`$PYTHON -c "import sys; print sys.platform"`
fi
-echo "$as_me:$LINENO: result: $am_cv_python_platform" >&5
-echo "${ECHO_T}$am_cv_python_platform" >&6
+{ $as_echo "$as_me:$LINENO: result: $am_cv_python_platform" >&5
+$as_echo "$am_cv_python_platform" >&6; }
PYTHON_PLATFORM=$am_cv_python_platform
- echo "$as_me:$LINENO: checking for $am_display_PYTHON script directory" >&5
-echo $ECHO_N "checking for $am_display_PYTHON script directory... $ECHO_C" >&6
+ { $as_echo "$as_me:$LINENO: checking for $am_display_PYTHON script directory" >&5
+$as_echo_n "checking for $am_display_PYTHON script directory... " >&6; }
if test "${am_cv_python_pythondir+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
am_cv_python_pythondir=`$PYTHON -c "from distutils import sysconfig; print sysconfig.get_python_lib(0,0,prefix='$PYTHON_PREFIX')" 2>/dev/null ||
echo "$PYTHON_PREFIX/lib/python$PYTHON_VERSION/site-packages"`
fi
-echo "$as_me:$LINENO: result: $am_cv_python_pythondir" >&5
-echo "${ECHO_T}$am_cv_python_pythondir" >&6
+{ $as_echo "$as_me:$LINENO: result: $am_cv_python_pythondir" >&5
+$as_echo "$am_cv_python_pythondir" >&6; }
pythondir=$am_cv_python_pythondir
@@ -3800,16 +4429,16 @@ echo "${ECHO_T}$am_cv_python_pythondir" >&6
pkgpythondir=\${pythondir}/$PACKAGE
- echo "$as_me:$LINENO: checking for $am_display_PYTHON extension module directory" >&5
-echo $ECHO_N "checking for $am_display_PYTHON extension module directory... $ECHO_C" >&6
+ { $as_echo "$as_me:$LINENO: checking for $am_display_PYTHON extension module directory" >&5
+$as_echo_n "checking for $am_display_PYTHON extension module directory... " >&6; }
if test "${am_cv_python_pyexecdir+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
am_cv_python_pyexecdir=`$PYTHON -c "from distutils import sysconfig; print sysconfig.get_python_lib(1,0,prefix='$PYTHON_EXEC_PREFIX')" 2>/dev/null ||
echo "${PYTHON_EXEC_PREFIX}/lib/python${PYTHON_VERSION}/site-packages"`
fi
-echo "$as_me:$LINENO: result: $am_cv_python_pyexecdir" >&5
-echo "${ECHO_T}$am_cv_python_pyexecdir" >&6
+{ $as_echo "$as_me:$LINENO: result: $am_cv_python_pyexecdir" >&5
+$as_echo "$am_cv_python_pyexecdir" >&6; }
pyexecdir=$am_cv_python_pyexecdir
@@ -3824,10 +4453,9 @@ echo "${ECHO_T}$am_cv_python_pyexecdir" >&6
-# Check whether --with-boost or --without-boost was given.
+# Check whether --with-boost was given.
if test "${with_boost+set}" = set; then
- withval="$with_boost"
-
+ withval=$with_boost;
if test "$withval" = "no"; then
want_boost="no"
elif test "$withval" = "yes"; then
@@ -3840,27 +4468,28 @@ if test "${with_boost+set}" = set; then
else
want_boost="yes"
-fi;
+fi
-# Check whether --with-boost-libdir or --without-boost-libdir was given.
-if test "${with_boost_libdir+set}" = set; then
- withval="$with_boost_libdir"
+# Check whether --with-boost-libdir was given.
+if test "${with_boost_libdir+set}" = set; then
+ withval=$with_boost_libdir;
if test -d $withval
then
ac_boost_lib_path="$withval"
else
- { { echo "$as_me:$LINENO: error: --with-boost-libdir expected directory name" >&5
-echo "$as_me: error: --with-boost-libdir expected directory name" >&2;}
+ { { $as_echo "$as_me:$LINENO: error: --with-boost-libdir expected directory name" >&5
+$as_echo "$as_me: error: --with-boost-libdir expected directory name" >&2;}
{ (exit 1); exit 1; }; }
fi
else
ac_boost_lib_path=""
-fi;
+fi
+
if test "x$want_boost" = "xyes"; then
boost_lib_version_req=1.47.0
@@ -3872,8 +4501,8 @@ if test "x$want_boost" = "xyes"; then
boost_lib_version_req_sub_minor="0"
fi
WANT_BOOST_VERSION=`expr $boost_lib_version_req_major \* 100000 \+ $boost_lib_version_req_minor \* 100 \+ $boost_lib_version_req_sub_minor`
- echo "$as_me:$LINENO: checking for boostlib >= $boost_lib_version_req" >&5
-echo $ECHO_N "checking for boostlib >= $boost_lib_version_req... $ECHO_C" >&6
+ { $as_echo "$as_me:$LINENO: checking for boostlib >= $boost_lib_version_req" >&5
+$as_echo_n "checking for boostlib >= $boost_lib_version_req... " >&6; }
succeeded=no
if test "$ac_boost_path" != ""; then
@@ -3901,7 +4530,7 @@ echo $ECHO_N "checking for boostlib >= $boost_lib_version_req... $ECHO_C" >&6
LDFLAGS="$LDFLAGS $BOOST_LDFLAGS"
export LDFLAGS
- ac_ext=cc
+ ac_ext=cpp
ac_cpp='$CXXCPP $CPPFLAGS'
ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
@@ -3931,41 +4560,38 @@ main ()
}
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_cxx_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-
- echo "$as_me:$LINENO: result: yes" >&5
-echo "${ECHO_T}yes" >&6
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
succeeded=yes
found_system=yes
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
ac_ext=c
ac_cpp='$CPP $CPPFLAGS'
ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
@@ -4017,8 +4643,8 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu
stage_version_shorten=`expr $stage_version : '\([0-9]*\.[0-9]*\)'`
V_CHECK=`expr $stage_version_shorten \>\= $_version`
if test "$V_CHECK" = "1" -a "$ac_boost_lib_path" = "" ; then
- { echo "$as_me:$LINENO: We will use a staged boost library from $BOOST_ROOT" >&5
-echo "$as_me: We will use a staged boost library from $BOOST_ROOT" >&6;}
+ { $as_echo "$as_me:$LINENO: We will use a staged boost library from $BOOST_ROOT" >&5
+$as_echo "$as_me: We will use a staged boost library from $BOOST_ROOT" >&6;}
BOOST_CPPFLAGS="-I$BOOST_ROOT"
BOOST_LDFLAGS="-L$BOOST_ROOT/stage/lib"
fi
@@ -4031,7 +4657,7 @@ echo "$as_me: We will use a staged boost library from $BOOST_ROOT" >&6;}
LDFLAGS="$LDFLAGS $BOOST_LDFLAGS"
export LDFLAGS
- ac_ext=cc
+ ac_ext=cpp
ac_cpp='$CXXCPP $CPPFLAGS'
ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
@@ -4061,41 +4687,38 @@ main ()
}
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_cxx_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-
- echo "$as_me:$LINENO: result: yes" >&5
-echo "${ECHO_T}yes" >&6
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
succeeded=yes
found_system=yes
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
ac_ext=c
ac_cpp='$CPP $CPPFLAGS'
ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
@@ -4106,19 +4729,19 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu
if test "$succeeded" != "yes" ; then
if test "$_version" = "0" ; then
- { { echo "$as_me:$LINENO: error: We could not detect the boost libraries (version $boost_lib_version_req_shorten or higher). If you have a staged boost library (still not installed) please specify \$BOOST_ROOT in your environment and do not give a PATH to --with-boost option. If you are sure you have boost installed, then check your version number looking in <boost/version.hpp>. See http://randspringer.de/boost for more documentation." >&5
-echo "$as_me: error: We could not detect the boost libraries (version $boost_lib_version_req_shorten or higher). If you have a staged boost library (still not installed) please specify \$BOOST_ROOT in your environment and do not give a PATH to --with-boost option. If you are sure you have boost installed, then check your version number looking in <boost/version.hpp>. See http://randspringer.de/boost for more documentation." >&2;}
+ { { $as_echo "$as_me:$LINENO: error: We could not detect the boost libraries (version $boost_lib_version_req_shorten or higher). If you have a staged boost library (still not installed) please specify \$BOOST_ROOT in your environment and do not give a PATH to --with-boost option. If you are sure you have boost installed, then check your version number looking in <boost/version.hpp>. See http://randspringer.de/boost for more documentation." >&5
+$as_echo "$as_me: error: We could not detect the boost libraries (version $boost_lib_version_req_shorten or higher). If you have a staged boost library (still not installed) please specify \$BOOST_ROOT in your environment and do not give a PATH to --with-boost option. If you are sure you have boost installed, then check your version number looking in <boost/version.hpp>. See http://randspringer.de/boost for more documentation." >&2;}
{ (exit 1); exit 1; }; }
else
- { echo "$as_me:$LINENO: Your boost libraries seems to old (version $_version)." >&5
-echo "$as_me: Your boost libraries seems to old (version $_version)." >&6;}
+ { $as_echo "$as_me:$LINENO: Your boost libraries seems to old (version $_version)." >&5
+$as_echo "$as_me: Your boost libraries seems to old (version $_version)." >&6;}
fi
else
cat >>confdefs.h <<\_ACEOF
-#define HAVE_BOOST
+#define HAVE_BOOST /**/
_ACEOF
fi
@@ -4130,10 +4753,9 @@ fi
-# Check whether --with-bam or --without-bam was given.
+# Check whether --with-bam was given.
if test "${with_bam+set}" = set; then
- withval="$with_bam"
-
+ withval=$with_bam;
if test "$withval" = "no"; then
want_bam="no"
elif test "$withval" = "yes"; then
@@ -4146,27 +4768,28 @@ if test "${with_bam+set}" = set; then
else
want_bam="yes"
-fi;
+fi
-# Check whether --with-bam-libdir or --without-bam-libdir was given.
-if test "${with_bam_libdir+set}" = set; then
- withval="$with_bam_libdir"
+# Check whether --with-bam-libdir was given.
+if test "${with_bam_libdir+set}" = set; then
+ withval=$with_bam_libdir;
if test -d $withval
then
ac_bam_lib_path="$withval"
else
- { { echo "$as_me:$LINENO: error: --with-bam-libdir expected directory name" >&5
-echo "$as_me: error: --with-bam-libdir expected directory name" >&2;}
+ { { $as_echo "$as_me:$LINENO: error: --with-bam-libdir expected directory name" >&5
+$as_echo "$as_me: error: --with-bam-libdir expected directory name" >&2;}
{ (exit 1); exit 1; }; }
fi
else
ac_bam_lib_path=""
-fi;
+fi
+
if test "x$want_bam" = "xyes"; then
# bam_lib_version_req=ifelse([], ,1.20.0,)
@@ -4178,8 +4801,8 @@ if test "x$want_bam" = "xyes"; then
# bam_lib_version_req_sub_minor="0"
# fi
# WANT_BAM_VERSION=`expr $bam_lib_version_req_major \* 100000 \+ $bam_lib_version_req_minor \* 100 \+ $bam_lib_version_req_sub_minor`
- echo "$as_me:$LINENO: checking for bamlib" >&5
-echo $ECHO_N "checking for bamlib... $ECHO_C" >&6
+ { $as_echo "$as_me:$LINENO: checking for bamlib" >&5
+$as_echo_n "checking for bamlib... " >&6; }
succeeded=no
if test "$ac_bam_path" != ""; then
@@ -4207,7 +4830,7 @@ echo $ECHO_N "checking for bamlib... $ECHO_C" >&6
LDFLAGS="$LDFLAGS $BAM_LDFLAGS"
export LDFLAGS
- ac_ext=cc
+ ac_ext=cpp
ac_cpp='$CXXCPP $CPPFLAGS'
ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
@@ -4232,41 +4855,38 @@ main ()
}
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_cxx_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-
- echo "$as_me:$LINENO: result: yes" >&5
-echo "${ECHO_T}yes" >&6
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
succeeded=yes
found_system=yes
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
ac_ext=c
ac_cpp='$CPP $CPPFLAGS'
ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
@@ -4316,8 +4936,8 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu
stage_version_shorten=`expr $stage_version : '\([0-9]*\.[0-9]*\)'`
V_CHECK=`expr $stage_version_shorten \>\= $_version`
if test "$V_CHECK" = "1" -a "$ac_bam_lib_path" = "" ; then
- { echo "$as_me:$LINENO: We will use a staged bam library from $BAM_ROOT" >&5
-echo "$as_me: We will use a staged bam library from $BAM_ROOT" >&6;}
+ { $as_echo "$as_me:$LINENO: We will use a staged bam library from $BAM_ROOT" >&5
+$as_echo "$as_me: We will use a staged bam library from $BAM_ROOT" >&6;}
BAM_CPPFLAGS="-I$BAM_ROOT"
BAM_LDFLAGS="-L$BAM_ROOT/stage/lib"
fi
@@ -4330,7 +4950,7 @@ echo "$as_me: We will use a staged bam library from $BAM_ROOT" >&6;}
LDFLAGS="$LDFLAGS $BAM_LDFLAGS"
export LDFLAGS
- ac_ext=cc
+ ac_ext=cpp
ac_cpp='$CXXCPP $CPPFLAGS'
ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
@@ -4355,41 +4975,38 @@ main ()
}
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_cxx_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-
- echo "$as_me:$LINENO: result: yes" >&5
-echo "${ECHO_T}yes" >&6
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
succeeded=yes
found_system=yes
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
ac_ext=c
ac_cpp='$CPP $CPPFLAGS'
ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
@@ -4400,12 +5017,12 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu
if test "$succeeded" != "yes" ; then
if test "$_version" = "0" ; then
- { { echo "$as_me:$LINENO: error: We could not detect the bam libraries (version $bam_lib_version_req_shorten or higher). If you have a staged bam library (still not installed) please specify \$BAM_ROOT in your environment and do not give a PATH to --with-bam option. If you are sure you have bam installed, then check your version number looking in <bam/version.hpp>. See http://randspringer.de/bam for more documentation." >&5
-echo "$as_me: error: We could not detect the bam libraries (version $bam_lib_version_req_shorten or higher). If you have a staged bam library (still not installed) please specify \$BAM_ROOT in your environment and do not give a PATH to --with-bam option. If you are sure you have bam installed, then check your version number looking in <bam/version.hpp>. See http://randspringer.de/bam for more documentation." >&2;}
+ { { $as_echo "$as_me:$LINENO: error: We could not detect the bam libraries (version $bam_lib_version_req_shorten or higher). If you have a staged bam library (still not installed) please specify \$BAM_ROOT in your environment and do not give a PATH to --with-bam option. If you are sure you have bam installed, then check your version number looking in <bam/version.hpp>. See http://randspringer.de/bam for more documentation." >&5
+$as_echo "$as_me: error: We could not detect the bam libraries (version $bam_lib_version_req_shorten or higher). If you have a staged bam library (still not installed) please specify \$BAM_ROOT in your environment and do not give a PATH to --with-bam option. If you are sure you have bam installed, then check your version number looking in <bam/version.hpp>. See http://randspringer.de/bam for more documentation." >&2;}
{ (exit 1); exit 1; }; }
else
- { echo "$as_me:$LINENO: Your bam libraries seem too old (version $_version)." >&5
-echo "$as_me: Your bam libraries seem too old (version $_version)." >&6;}
+ { $as_echo "$as_me:$LINENO: Your bam libraries seem too old (version $_version)." >&5
+$as_echo "$as_me: Your bam libraries seem too old (version $_version)." >&6;}
fi
else
BAM_LIB="-lbam"
@@ -4414,7 +5031,7 @@ echo "$as_me: Your bam libraries seem too old (version $_version)." >&6;}
cat >>confdefs.h <<\_ACEOF
-#define HAVE_BAM
+#define HAVE_BAM /**/
_ACEOF
fi
@@ -4425,44 +5042,57 @@ fi
# Make sure we can run config.sub.
-$ac_config_sub sun4 >/dev/null 2>&1 ||
- { { echo "$as_me:$LINENO: error: cannot run $ac_config_sub" >&5
-echo "$as_me: error: cannot run $ac_config_sub" >&2;}
+$SHELL "$ac_aux_dir/config.sub" sun4 >/dev/null 2>&1 ||
+ { { $as_echo "$as_me:$LINENO: error: cannot run $SHELL $ac_aux_dir/config.sub" >&5
+$as_echo "$as_me: error: cannot run $SHELL $ac_aux_dir/config.sub" >&2;}
{ (exit 1); exit 1; }; }
-echo "$as_me:$LINENO: checking build system type" >&5
-echo $ECHO_N "checking build system type... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking build system type" >&5
+$as_echo_n "checking build system type... " >&6; }
if test "${ac_cv_build+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
-else
- ac_cv_build_alias=$build_alias
-test -z "$ac_cv_build_alias" &&
- ac_cv_build_alias=`$ac_config_guess`
-test -z "$ac_cv_build_alias" &&
- { { echo "$as_me:$LINENO: error: cannot guess build type; you must specify one" >&5
-echo "$as_me: error: cannot guess build type; you must specify one" >&2;}
+ $as_echo_n "(cached) " >&6
+else
+ ac_build_alias=$build_alias
+test "x$ac_build_alias" = x &&
+ ac_build_alias=`$SHELL "$ac_aux_dir/config.guess"`
+test "x$ac_build_alias" = x &&
+ { { $as_echo "$as_me:$LINENO: error: cannot guess build type; you must specify one" >&5
+$as_echo "$as_me: error: cannot guess build type; you must specify one" >&2;}
{ (exit 1); exit 1; }; }
-ac_cv_build=`$ac_config_sub $ac_cv_build_alias` ||
- { { echo "$as_me:$LINENO: error: $ac_config_sub $ac_cv_build_alias failed" >&5
-echo "$as_me: error: $ac_config_sub $ac_cv_build_alias failed" >&2;}
+ac_cv_build=`$SHELL "$ac_aux_dir/config.sub" $ac_build_alias` ||
+ { { $as_echo "$as_me:$LINENO: error: $SHELL $ac_aux_dir/config.sub $ac_build_alias failed" >&5
+$as_echo "$as_me: error: $SHELL $ac_aux_dir/config.sub $ac_build_alias failed" >&2;}
{ (exit 1); exit 1; }; }
fi
-echo "$as_me:$LINENO: result: $ac_cv_build" >&5
-echo "${ECHO_T}$ac_cv_build" >&6
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_build" >&5
+$as_echo "$ac_cv_build" >&6; }
+case $ac_cv_build in
+*-*-*) ;;
+*) { { $as_echo "$as_me:$LINENO: error: invalid value of canonical build" >&5
+$as_echo "$as_me: error: invalid value of canonical build" >&2;}
+ { (exit 1); exit 1; }; };;
+esac
build=$ac_cv_build
-build_cpu=`echo $ac_cv_build | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\1/'`
-build_vendor=`echo $ac_cv_build | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\2/'`
-build_os=`echo $ac_cv_build | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\3/'`
+ac_save_IFS=$IFS; IFS='-'
+set x $ac_cv_build
+shift
+build_cpu=$1
+build_vendor=$2
+shift; shift
+# Remember, the first character of IFS is used to create $*,
+# except with old shells:
+build_os=$*
+IFS=$ac_save_IFS
+case $build_os in *\ *) build_os=`echo "$build_os" | sed 's/ /-/g'`;; esac
-# Check whether --with-boost-system or --without-boost-system was given.
+# Check whether --with-boost-system was given.
if test "${with_boost_system+set}" = set; then
- withval="$with_boost_system"
-
+ withval=$with_boost_system;
if test "$withval" = "no"; then
want_boost="no"
elif test "$withval" = "yes"; then
@@ -4478,7 +5108,8 @@ if test "${with_boost_system+set}" = set; then
else
want_boost="yes"
-fi;
+fi
+
if test "x$want_boost" = "xyes"; then
@@ -4491,12 +5122,12 @@ fi;
LDFLAGS="$LDFLAGS $BOOST_LDFLAGS"
export LDFLAGS
- echo "$as_me:$LINENO: checking whether the Boost::System library is available" >&5
-echo $ECHO_N "checking whether the Boost::System library is available... $ECHO_C" >&6
+ { $as_echo "$as_me:$LINENO: checking whether the Boost::System library is available" >&5
+$as_echo_n "checking whether the Boost::System library is available... " >&6; }
if test "${ax_cv_boost_system+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
- ac_ext=cc
+ ac_ext=cpp
ac_cpp='$CXXCPP $CPPFLAGS'
ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
@@ -4519,35 +5150,32 @@ main ()
}
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_cxx_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
ax_cv_boost_system=yes
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-ax_cv_boost_system=no
+ ax_cv_boost_system=no
fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
CXXFLAGS=$CXXFLAGS_SAVE
ac_ext=c
ac_cpp='$CPP $CPPFLAGS'
@@ -4557,14 +5185,14 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu
fi
-echo "$as_me:$LINENO: result: $ax_cv_boost_system" >&5
-echo "${ECHO_T}$ax_cv_boost_system" >&6
+{ $as_echo "$as_me:$LINENO: result: $ax_cv_boost_system" >&5
+$as_echo "$ax_cv_boost_system" >&6; }
if test "x$ax_cv_boost_system" = "xyes"; then
cat >>confdefs.h <<\_ACEOF
-#define HAVE_BOOST_SYSTEM
+#define HAVE_BOOST_SYSTEM /**/
_ACEOF
BOOSTLIBDIR=`echo $BOOST_LDFLAGS | sed -e 's/[^\/]*//'`
@@ -4574,11 +5202,11 @@ _ACEOF
if test "x$ax_boost_user_system_lib" = "x"; then
for libextension in `ls $BOOSTLIBDIR/libboost_system*.so* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^lib\(boost_system.*\)\.so.*$;\1;'` `ls $BOOSTLIBDIR/libboost_system*.a* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^lib\(boost_system.*\)\.a*$;\1;'`; do
ax_lib=${libextension}
- as_ac_Lib=`echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
-echo "$as_me:$LINENO: checking for exit in -l$ax_lib" >&5
-echo $ECHO_N "checking for exit in -l$ax_lib... $ECHO_C" >&6
-if eval "test \"\${$as_ac_Lib+set}\" = set"; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ as_ac_Lib=`$as_echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
+{ $as_echo "$as_me:$LINENO: checking for exit in -l$ax_lib" >&5
+$as_echo_n "checking for exit in -l$ax_lib... " >&6; }
+if { as_var=$as_ac_Lib; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
else
ac_check_lib_save_LIBS=$LIBS
LIBS="-l$ax_lib $LIBS"
@@ -4589,57 +5217,62 @@ cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h. */
-/* Override any gcc2 internal prototype to avoid an error. */
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
#ifdef __cplusplus
extern "C"
#endif
-/* We use char because int might match the return type of a gcc2
- builtin and then its argument prototype would still apply. */
char exit ();
int
main ()
{
-exit ();
+return exit ();
;
return 0;
}
_ACEOF
rm -f conftest.$ac_objext conftest$ac_exeext
-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
- (eval $ac_link) 2>conftest.er1
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
eval "$as_ac_Lib=yes"
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-eval "$as_ac_Lib=no"
+ eval "$as_ac_Lib=no"
fi
-rm -f conftest.err conftest.$ac_objext \
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
conftest$ac_exeext conftest.$ac_ext
LIBS=$ac_check_lib_save_LIBS
fi
-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Lib'}'`" >&5
-echo "${ECHO_T}`eval echo '${'$as_ac_Lib'}'`" >&6
-if test `eval echo '${'$as_ac_Lib'}'` = yes; then
+ac_res=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+as_val=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
BOOST_SYSTEM_LIB="-l$ax_lib"; link_system="yes"; break
else
link_system="no"
@@ -4649,11 +5282,11 @@ fi
if test "x$link_system" != "xyes"; then
for libextension in `ls $BOOSTLIBDIR/boost_system*.dll* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^\(boost_system.*\)\.dll.*$;\1;'` `ls $BOOSTLIBDIR/libboost_system*.a* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^\(boost_system.*\)\.a*$;\1;'` ; do
ax_lib=${libextension}
- as_ac_Lib=`echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
-echo "$as_me:$LINENO: checking for exit in -l$ax_lib" >&5
-echo $ECHO_N "checking for exit in -l$ax_lib... $ECHO_C" >&6
-if eval "test \"\${$as_ac_Lib+set}\" = set"; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ as_ac_Lib=`$as_echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
+{ $as_echo "$as_me:$LINENO: checking for exit in -l$ax_lib" >&5
+$as_echo_n "checking for exit in -l$ax_lib... " >&6; }
+if { as_var=$as_ac_Lib; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
else
ac_check_lib_save_LIBS=$LIBS
LIBS="-l$ax_lib $LIBS"
@@ -4664,57 +5297,62 @@ cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h. */
-/* Override any gcc2 internal prototype to avoid an error. */
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
#ifdef __cplusplus
extern "C"
#endif
-/* We use char because int might match the return type of a gcc2
- builtin and then its argument prototype would still apply. */
char exit ();
int
main ()
{
-exit ();
+return exit ();
;
return 0;
}
_ACEOF
rm -f conftest.$ac_objext conftest$ac_exeext
-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
- (eval $ac_link) 2>conftest.er1
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
eval "$as_ac_Lib=yes"
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-eval "$as_ac_Lib=no"
+ eval "$as_ac_Lib=no"
fi
-rm -f conftest.err conftest.$ac_objext \
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
conftest$ac_exeext conftest.$ac_ext
LIBS=$ac_check_lib_save_LIBS
fi
-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Lib'}'`" >&5
-echo "${ECHO_T}`eval echo '${'$as_ac_Lib'}'`" >&6
-if test `eval echo '${'$as_ac_Lib'}'` = yes; then
+ac_res=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+as_val=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
BOOST_SYSTEM_LIB="-l$ax_lib"; link_system="yes"; break
else
link_system="no"
@@ -4734,11 +5372,11 @@ fi
if test "x$ax_boost_user_system_lib" = "x"; then
for libextension in `ls $BOOSTLIBDIR/libboost_system*.so* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^lib\(boost_system.*\)\.so.*$;\1;'` `ls $BOOSTLIBDIR/libboost_system*.a* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^lib\(boost_system.*\)\.a*$;\1;'`; do
ax_lib=${libextension}
- as_ac_Lib=`echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
-echo "$as_me:$LINENO: checking for exit in -l$ax_lib" >&5
-echo $ECHO_N "checking for exit in -l$ax_lib... $ECHO_C" >&6
-if eval "test \"\${$as_ac_Lib+set}\" = set"; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ as_ac_Lib=`$as_echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
+{ $as_echo "$as_me:$LINENO: checking for exit in -l$ax_lib" >&5
+$as_echo_n "checking for exit in -l$ax_lib... " >&6; }
+if { as_var=$as_ac_Lib; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
else
ac_check_lib_save_LIBS=$LIBS
LIBS="-l$ax_lib $LIBS"
@@ -4749,57 +5387,62 @@ cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h. */
-/* Override any gcc2 internal prototype to avoid an error. */
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
#ifdef __cplusplus
extern "C"
#endif
-/* We use char because int might match the return type of a gcc2
- builtin and then its argument prototype would still apply. */
char exit ();
int
main ()
{
-exit ();
+return exit ();
;
return 0;
}
_ACEOF
rm -f conftest.$ac_objext conftest$ac_exeext
-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
- (eval $ac_link) 2>conftest.er1
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
eval "$as_ac_Lib=yes"
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-eval "$as_ac_Lib=no"
+ eval "$as_ac_Lib=no"
fi
-rm -f conftest.err conftest.$ac_objext \
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
conftest$ac_exeext conftest.$ac_ext
LIBS=$ac_check_lib_save_LIBS
fi
-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Lib'}'`" >&5
-echo "${ECHO_T}`eval echo '${'$as_ac_Lib'}'`" >&6
-if test `eval echo '${'$as_ac_Lib'}'` = yes; then
+ac_res=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+as_val=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
BOOST_SYSTEM_LIB="-l$ax_lib"; link_system="yes"; break
else
link_system="no"
@@ -4809,11 +5452,11 @@ fi
if test "x$link_system" != "xyes"; then
for libextension in `ls $BOOSTLIBDIR/boost_system*.dll* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^\(boost_system.*\)\.dll.*$;\1;'` `ls $BOOSTLIBDIR/libboost_system*.a* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^\(boost_system.*\)\.a*$;\1;'` ; do
ax_lib=${libextension}
- as_ac_Lib=`echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
-echo "$as_me:$LINENO: checking for exit in -l$ax_lib" >&5
-echo $ECHO_N "checking for exit in -l$ax_lib... $ECHO_C" >&6
-if eval "test \"\${$as_ac_Lib+set}\" = set"; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ as_ac_Lib=`$as_echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
+{ $as_echo "$as_me:$LINENO: checking for exit in -l$ax_lib" >&5
+$as_echo_n "checking for exit in -l$ax_lib... " >&6; }
+if { as_var=$as_ac_Lib; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
else
ac_check_lib_save_LIBS=$LIBS
LIBS="-l$ax_lib $LIBS"
@@ -4824,57 +5467,62 @@ cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h. */
-/* Override any gcc2 internal prototype to avoid an error. */
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
#ifdef __cplusplus
extern "C"
#endif
-/* We use char because int might match the return type of a gcc2
- builtin and then its argument prototype would still apply. */
char exit ();
int
main ()
{
-exit ();
+return exit ();
;
return 0;
}
_ACEOF
rm -f conftest.$ac_objext conftest$ac_exeext
-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
- (eval $ac_link) 2>conftest.er1
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
eval "$as_ac_Lib=yes"
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-eval "$as_ac_Lib=no"
+ eval "$as_ac_Lib=no"
fi
-rm -f conftest.err conftest.$ac_objext \
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
conftest$ac_exeext conftest.$ac_ext
LIBS=$ac_check_lib_save_LIBS
fi
-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Lib'}'`" >&5
-echo "${ECHO_T}`eval echo '${'$as_ac_Lib'}'`" >&6
-if test `eval echo '${'$as_ac_Lib'}'` = yes; then
+ac_res=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+as_val=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
BOOST_SYSTEM_LIB="-l$ax_lib"; link_system="yes"; break
else
link_system="no"
@@ -4898,10 +5546,9 @@ fi
-# Check whether --with-boost-serialization or --without-boost-serialization was given.
+# Check whether --with-boost-serialization was given.
if test "${with_boost_serialization+set}" = set; then
- withval="$with_boost_serialization"
-
+ withval=$with_boost_serialization;
if test "$withval" = "no"; then
want_boost="no"
elif test "$withval" = "yes"; then
@@ -4917,7 +5564,8 @@ if test "${with_boost_serialization+set}" = set; then
else
want_boost="yes"
-fi;
+fi
+
if test "x$want_boost" = "xyes"; then
@@ -4930,12 +5578,12 @@ fi;
LDFLAGS="$LDFLAGS $BOOST_LDFLAGS"
export LDFLAGS
- echo "$as_me:$LINENO: checking whether the Boost::Serialization library is available" >&5
-echo $ECHO_N "checking whether the Boost::Serialization library is available... $ECHO_C" >&6
+ { $as_echo "$as_me:$LINENO: checking whether the Boost::Serialization library is available" >&5
+$as_echo_n "checking whether the Boost::Serialization library is available... " >&6; }
if test "${ax_cv_boost_serialization+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
- ac_ext=cc
+ ac_ext=cpp
ac_cpp='$CXXCPP $CPPFLAGS'
ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
@@ -4958,35 +5606,32 @@ main ()
}
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_cxx_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
ax_cv_boost_serialization=yes
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-ax_cv_boost_serialization=no
+ ax_cv_boost_serialization=no
fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
CXXFLAGS=$CXXFLAGS_SAVE
ac_ext=c
ac_cpp='$CPP $CPPFLAGS'
@@ -4996,14 +5641,14 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu
fi
-echo "$as_me:$LINENO: result: $ax_cv_boost_serialization" >&5
-echo "${ECHO_T}$ax_cv_boost_serialization" >&6
+{ $as_echo "$as_me:$LINENO: result: $ax_cv_boost_serialization" >&5
+$as_echo "$ax_cv_boost_serialization" >&6; }
if test "x$ax_cv_boost_serialization" = "xyes"; then
cat >>confdefs.h <<\_ACEOF
-#define HAVE_BOOST_SERIALIZATION
+#define HAVE_BOOST_SERIALIZATION /**/
_ACEOF
BOOSTLIBDIR=`echo $BOOST_LDFLAGS | sed -e 's/[^\/]*//'`
@@ -5013,11 +5658,11 @@ _ACEOF
if test "x$ax_boost_user_serialization_lib" = "x"; then
for libextension in `ls $BOOSTLIBDIR/libboost_serialization*.so* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^lib\(boost_serialization.*\)\.so.*$;\1;'` `ls $BOOSTLIBDIR/libboost_serialization*.a* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^lib\(boost_serialization.*\)\.a*$;\1;'`; do
ax_lib=${libextension}
- as_ac_Lib=`echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
-echo "$as_me:$LINENO: checking for exit in -l$ax_lib" >&5
-echo $ECHO_N "checking for exit in -l$ax_lib... $ECHO_C" >&6
-if eval "test \"\${$as_ac_Lib+set}\" = set"; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ as_ac_Lib=`$as_echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
+{ $as_echo "$as_me:$LINENO: checking for exit in -l$ax_lib" >&5
+$as_echo_n "checking for exit in -l$ax_lib... " >&6; }
+if { as_var=$as_ac_Lib; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
else
ac_check_lib_save_LIBS=$LIBS
LIBS="-l$ax_lib $LIBS"
@@ -5028,57 +5673,62 @@ cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h. */
-/* Override any gcc2 internal prototype to avoid an error. */
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
#ifdef __cplusplus
extern "C"
#endif
-/* We use char because int might match the return type of a gcc2
- builtin and then its argument prototype would still apply. */
char exit ();
int
main ()
{
-exit ();
+return exit ();
;
return 0;
}
_ACEOF
rm -f conftest.$ac_objext conftest$ac_exeext
-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
- (eval $ac_link) 2>conftest.er1
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
eval "$as_ac_Lib=yes"
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-eval "$as_ac_Lib=no"
+ eval "$as_ac_Lib=no"
fi
-rm -f conftest.err conftest.$ac_objext \
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
conftest$ac_exeext conftest.$ac_ext
LIBS=$ac_check_lib_save_LIBS
fi
-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Lib'}'`" >&5
-echo "${ECHO_T}`eval echo '${'$as_ac_Lib'}'`" >&6
-if test `eval echo '${'$as_ac_Lib'}'` = yes; then
+ac_res=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+as_val=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
BOOST_SERIALIZATION_LIB="-l$ax_lib"; link_serialization="yes"; break
else
link_serialization="no"
@@ -5088,11 +5738,11 @@ fi
if test "x$link_serialization" != "xyes"; then
for libextension in `ls $BOOSTLIBDIR/boost_serialization*.dll* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^\(boost_serialization.*\)\.dll.*$;\1;'` `ls $BOOSTLIBDIR/libboost_serialization*.a* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^\(boost_serialization.*\)\.a*$;\1;'` ; do
ax_lib=${libextension}
- as_ac_Lib=`echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
-echo "$as_me:$LINENO: checking for exit in -l$ax_lib" >&5
-echo $ECHO_N "checking for exit in -l$ax_lib... $ECHO_C" >&6
-if eval "test \"\${$as_ac_Lib+set}\" = set"; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ as_ac_Lib=`$as_echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
+{ $as_echo "$as_me:$LINENO: checking for exit in -l$ax_lib" >&5
+$as_echo_n "checking for exit in -l$ax_lib... " >&6; }
+if { as_var=$as_ac_Lib; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
else
ac_check_lib_save_LIBS=$LIBS
LIBS="-l$ax_lib $LIBS"
@@ -5103,57 +5753,62 @@ cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h. */
-/* Override any gcc2 internal prototype to avoid an error. */
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
#ifdef __cplusplus
extern "C"
#endif
-/* We use char because int might match the return type of a gcc2
- builtin and then its argument prototype would still apply. */
char exit ();
int
main ()
{
-exit ();
+return exit ();
;
return 0;
}
_ACEOF
rm -f conftest.$ac_objext conftest$ac_exeext
-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
- (eval $ac_link) 2>conftest.er1
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
eval "$as_ac_Lib=yes"
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-eval "$as_ac_Lib=no"
+ eval "$as_ac_Lib=no"
fi
-rm -f conftest.err conftest.$ac_objext \
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
conftest$ac_exeext conftest.$ac_ext
LIBS=$ac_check_lib_save_LIBS
fi
-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Lib'}'`" >&5
-echo "${ECHO_T}`eval echo '${'$as_ac_Lib'}'`" >&6
-if test `eval echo '${'$as_ac_Lib'}'` = yes; then
+ac_res=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+as_val=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
BOOST_SERIALIZATION_LIB="-l$ax_lib"; link_serialization="yes"; break
else
link_serialization="no"
@@ -5173,11 +5828,11 @@ fi
if test "x$ax_boost_user_serialization_lib" = "x"; then
for libextension in `ls $BOOSTLIBDIR/libboost_serialization*.so* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^lib\(boost_serialization.*\)\.so.*$;\1;'` `ls $BOOSTLIBDIR/libboost_serialization*.a* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^lib\(boost_serialization.*\)\.a*$;\1;'`; do
ax_lib=${libextension}
- as_ac_Lib=`echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
-echo "$as_me:$LINENO: checking for exit in -l$ax_lib" >&5
-echo $ECHO_N "checking for exit in -l$ax_lib... $ECHO_C" >&6
-if eval "test \"\${$as_ac_Lib+set}\" = set"; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ as_ac_Lib=`$as_echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
+{ $as_echo "$as_me:$LINENO: checking for exit in -l$ax_lib" >&5
+$as_echo_n "checking for exit in -l$ax_lib... " >&6; }
+if { as_var=$as_ac_Lib; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
else
ac_check_lib_save_LIBS=$LIBS
LIBS="-l$ax_lib $LIBS"
@@ -5188,57 +5843,62 @@ cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h. */
-/* Override any gcc2 internal prototype to avoid an error. */
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
#ifdef __cplusplus
extern "C"
#endif
-/* We use char because int might match the return type of a gcc2
- builtin and then its argument prototype would still apply. */
char exit ();
int
main ()
{
-exit ();
+return exit ();
;
return 0;
}
_ACEOF
rm -f conftest.$ac_objext conftest$ac_exeext
-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
- (eval $ac_link) 2>conftest.er1
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
eval "$as_ac_Lib=yes"
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-eval "$as_ac_Lib=no"
+ eval "$as_ac_Lib=no"
fi
-rm -f conftest.err conftest.$ac_objext \
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
conftest$ac_exeext conftest.$ac_ext
LIBS=$ac_check_lib_save_LIBS
fi
-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Lib'}'`" >&5
-echo "${ECHO_T}`eval echo '${'$as_ac_Lib'}'`" >&6
-if test `eval echo '${'$as_ac_Lib'}'` = yes; then
+ac_res=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+as_val=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
BOOST_SERIALIZATION_LIB="-l$ax_lib"; link_serialization="yes"; break
else
link_serialization="no"
@@ -5248,11 +5908,11 @@ fi
if test "x$link_serialization" != "xyes"; then
for libextension in `ls $BOOSTLIBDIR/boost_serialization*.dll* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^\(boost_serialization.*\)\.dll.*$;\1;'` `ls $BOOSTLIBDIR/libboost_serialization*.a* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^\(boost_serialization.*\)\.a*$;\1;'` ; do
ax_lib=${libextension}
- as_ac_Lib=`echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
-echo "$as_me:$LINENO: checking for exit in -l$ax_lib" >&5
-echo $ECHO_N "checking for exit in -l$ax_lib... $ECHO_C" >&6
-if eval "test \"\${$as_ac_Lib+set}\" = set"; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ as_ac_Lib=`$as_echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
+{ $as_echo "$as_me:$LINENO: checking for exit in -l$ax_lib" >&5
+$as_echo_n "checking for exit in -l$ax_lib... " >&6; }
+if { as_var=$as_ac_Lib; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
else
ac_check_lib_save_LIBS=$LIBS
LIBS="-l$ax_lib $LIBS"
@@ -5263,57 +5923,62 @@ cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h. */
-/* Override any gcc2 internal prototype to avoid an error. */
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
#ifdef __cplusplus
extern "C"
#endif
-/* We use char because int might match the return type of a gcc2
- builtin and then its argument prototype would still apply. */
char exit ();
int
main ()
{
-exit ();
+return exit ();
;
return 0;
}
_ACEOF
rm -f conftest.$ac_objext conftest$ac_exeext
-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
- (eval $ac_link) 2>conftest.er1
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
eval "$as_ac_Lib=yes"
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-eval "$as_ac_Lib=no"
+ eval "$as_ac_Lib=no"
fi
-rm -f conftest.err conftest.$ac_objext \
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
conftest$ac_exeext conftest.$ac_ext
LIBS=$ac_check_lib_save_LIBS
fi
-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Lib'}'`" >&5
-echo "${ECHO_T}`eval echo '${'$as_ac_Lib'}'`" >&6
-if test `eval echo '${'$as_ac_Lib'}'` = yes; then
+ac_res=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+as_val=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
BOOST_SERIALIZATION_LIB="-l$ax_lib"; link_serialization="yes"; break
else
link_serialization="no"
@@ -5337,10 +6002,9 @@ fi
-# Check whether --with-boost-thread or --without-boost-thread was given.
+# Check whether --with-boost-thread was given.
if test "${with_boost_thread+set}" = set; then
- withval="$with_boost_thread"
-
+ withval=$with_boost_thread;
if test "$withval" = "no"; then
want_boost="no"
elif test "$withval" = "yes"; then
@@ -5356,7 +6020,8 @@ if test "${with_boost_thread+set}" = set; then
else
want_boost="yes"
-fi;
+fi
+
if test "x$want_boost" = "xyes"; then
@@ -5369,12 +6034,12 @@ fi;
LDFLAGS="$LDFLAGS $BOOST_LDFLAGS"
export LDFLAGS
- echo "$as_me:$LINENO: checking whether the Boost::Thread library is available" >&5
-echo $ECHO_N "checking whether the Boost::Thread library is available... $ECHO_C" >&6
+ { $as_echo "$as_me:$LINENO: checking whether the Boost::Thread library is available" >&5
+$as_echo_n "checking whether the Boost::Thread library is available... " >&6; }
if test "${ax_cv_boost_thread+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
- ac_ext=cc
+ ac_ext=cpp
ac_cpp='$CXXCPP $CPPFLAGS'
ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
@@ -5406,35 +6071,32 @@ boost::thread_group thrds;
}
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_cxx_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
ax_cv_boost_thread=yes
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-ax_cv_boost_thread=no
+ ax_cv_boost_thread=no
fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
CXXFLAGS=$CXXFLAGS_SAVE
ac_ext=c
ac_cpp='$CPP $CPPFLAGS'
@@ -5444,8 +6106,8 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu
fi
-echo "$as_me:$LINENO: result: $ax_cv_boost_thread" >&5
-echo "${ECHO_T}$ax_cv_boost_thread" >&6
+{ $as_echo "$as_me:$LINENO: result: $ax_cv_boost_thread" >&5
+$as_echo "$ax_cv_boost_thread" >&6; }
if test "x$ax_cv_boost_thread" = "xyes"; then
if test "x$build_os" = "xsolaris" ; then
BOOST_CPPFLAGS="-pthreads $BOOST_CPPFLAGS"
@@ -5459,7 +6121,7 @@ echo "${ECHO_T}$ax_cv_boost_thread" >&6
cat >>confdefs.h <<\_ACEOF
-#define HAVE_BOOST_THREAD
+#define HAVE_BOOST_THREAD /**/
_ACEOF
BOOSTLIBDIR=`echo $BOOST_LDFLAGS | sed -e 's/[^\/]*//'`
@@ -5474,11 +6136,11 @@ _ACEOF
if test "x$ax_boost_user_thread_lib" = "x"; then
for libextension in `ls $BOOSTLIBDIR/libboost_thread*.so* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^lib\(boost_thread.*\)\.so.*$;\1;'` `ls $BOOSTLIBDIR/libboost_thread*.a* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^lib\(boost_thread.*\)\.a*$;\1;'`; do
ax_lib=${libextension}
- as_ac_Lib=`echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
-echo "$as_me:$LINENO: checking for exit in -l$ax_lib" >&5
-echo $ECHO_N "checking for exit in -l$ax_lib... $ECHO_C" >&6
-if eval "test \"\${$as_ac_Lib+set}\" = set"; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ as_ac_Lib=`$as_echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
+{ $as_echo "$as_me:$LINENO: checking for exit in -l$ax_lib" >&5
+$as_echo_n "checking for exit in -l$ax_lib... " >&6; }
+if { as_var=$as_ac_Lib; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
else
ac_check_lib_save_LIBS=$LIBS
LIBS="-l$ax_lib $LIBS"
@@ -5489,57 +6151,62 @@ cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h. */
-/* Override any gcc2 internal prototype to avoid an error. */
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
#ifdef __cplusplus
extern "C"
#endif
-/* We use char because int might match the return type of a gcc2
- builtin and then its argument prototype would still apply. */
char exit ();
int
main ()
{
-exit ();
+return exit ();
;
return 0;
}
_ACEOF
rm -f conftest.$ac_objext conftest$ac_exeext
-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
- (eval $ac_link) 2>conftest.er1
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
eval "$as_ac_Lib=yes"
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-eval "$as_ac_Lib=no"
+ eval "$as_ac_Lib=no"
fi
-rm -f conftest.err conftest.$ac_objext \
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
conftest$ac_exeext conftest.$ac_ext
LIBS=$ac_check_lib_save_LIBS
fi
-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Lib'}'`" >&5
-echo "${ECHO_T}`eval echo '${'$as_ac_Lib'}'`" >&6
-if test `eval echo '${'$as_ac_Lib'}'` = yes; then
+ac_res=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+as_val=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
BOOST_THREAD_LIB="-l$ax_lib"; link_thread="yes"; break
else
link_thread="no"
@@ -5549,11 +6216,11 @@ fi
if test "x$link_thread" != "xyes"; then
for libextension in `ls $BOOSTLIBDIR/boost_thread*.dll* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^\(boost_thread.*\)\.dll.*$;\1;'` `ls $BOOSTLIBDIR/libboost_thread*.a* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^\(boost_thread.*\)\.a*$;\1;'` ; do
ax_lib=${libextension}
- as_ac_Lib=`echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
-echo "$as_me:$LINENO: checking for exit in -l$ax_lib" >&5
-echo $ECHO_N "checking for exit in -l$ax_lib... $ECHO_C" >&6
-if eval "test \"\${$as_ac_Lib+set}\" = set"; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ as_ac_Lib=`$as_echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
+{ $as_echo "$as_me:$LINENO: checking for exit in -l$ax_lib" >&5
+$as_echo_n "checking for exit in -l$ax_lib... " >&6; }
+if { as_var=$as_ac_Lib; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
else
ac_check_lib_save_LIBS=$LIBS
LIBS="-l$ax_lib $LIBS"
@@ -5564,57 +6231,62 @@ cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h. */
-/* Override any gcc2 internal prototype to avoid an error. */
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
#ifdef __cplusplus
extern "C"
#endif
-/* We use char because int might match the return type of a gcc2
- builtin and then its argument prototype would still apply. */
char exit ();
int
main ()
{
-exit ();
+return exit ();
;
return 0;
}
_ACEOF
rm -f conftest.$ac_objext conftest$ac_exeext
-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
- (eval $ac_link) 2>conftest.er1
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
eval "$as_ac_Lib=yes"
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-eval "$as_ac_Lib=no"
+ eval "$as_ac_Lib=no"
fi
-rm -f conftest.err conftest.$ac_objext \
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
conftest$ac_exeext conftest.$ac_ext
LIBS=$ac_check_lib_save_LIBS
fi
-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Lib'}'`" >&5
-echo "${ECHO_T}`eval echo '${'$as_ac_Lib'}'`" >&6
-if test `eval echo '${'$as_ac_Lib'}'` = yes; then
+ac_res=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+as_val=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
BOOST_THREAD_LIB="-l$ax_lib"; link_thread="yes"; break
else
link_thread="no"
@@ -5631,8 +6303,8 @@ fi
fi
if test "x$link_thread" = "xno"; then
- { { echo "$as_me:$LINENO: error: Could not link against $ax_lib !" >&5
-echo "$as_me: error: Could not link against $ax_lib !" >&2;}
+ { { $as_echo "$as_me:$LINENO: error: Could not link against $ax_lib !" >&5
+$as_echo "$as_me: error: Could not link against $ax_lib !" >&2;}
{ (exit 1); exit 1; }; }
else
case "x$build_os" in
@@ -5647,11 +6319,11 @@ echo "$as_me: error: Could not link against $ax_lib !" >&2;}
if test "x$ax_boost_user_system_lib" = "x"; then
for libextension in `ls $BOOSTLIBDIR/libboost_system*.so* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^lib\(boost_system.*\)\.so.*$;\1;'` `ls $BOOSTLIBDIR/libboost_system*.a* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^lib\(boost_system.*\)\.a*$;\1;'`; do
ax_lib=${libextension}
- as_ac_Lib=`echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
-echo "$as_me:$LINENO: checking for exit in -l$ax_lib" >&5
-echo $ECHO_N "checking for exit in -l$ax_lib... $ECHO_C" >&6
-if eval "test \"\${$as_ac_Lib+set}\" = set"; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ as_ac_Lib=`$as_echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
+{ $as_echo "$as_me:$LINENO: checking for exit in -l$ax_lib" >&5
+$as_echo_n "checking for exit in -l$ax_lib... " >&6; }
+if { as_var=$as_ac_Lib; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
else
ac_check_lib_save_LIBS=$LIBS
LIBS="-l$ax_lib $LIBS"
@@ -5662,57 +6334,62 @@ cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h. */
-/* Override any gcc2 internal prototype to avoid an error. */
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
#ifdef __cplusplus
extern "C"
#endif
-/* We use char because int might match the return type of a gcc2
- builtin and then its argument prototype would still apply. */
char exit ();
int
main ()
{
-exit ();
+return exit ();
;
return 0;
}
_ACEOF
rm -f conftest.$ac_objext conftest$ac_exeext
-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
- (eval $ac_link) 2>conftest.er1
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
eval "$as_ac_Lib=yes"
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-eval "$as_ac_Lib=no"
+ eval "$as_ac_Lib=no"
fi
-rm -f conftest.err conftest.$ac_objext \
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
conftest$ac_exeext conftest.$ac_ext
LIBS=$ac_check_lib_save_LIBS
fi
-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Lib'}'`" >&5
-echo "${ECHO_T}`eval echo '${'$as_ac_Lib'}'`" >&6
-if test `eval echo '${'$as_ac_Lib'}'` = yes; then
+ac_res=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+as_val=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
BOOST_SYSTEM_LIB="-l$ax_lib"; link_system="yes"; break
else
link_system="no"
@@ -5722,11 +6399,11 @@ fi
if test "x$link_system" != "xyes"; then
for libextension in `ls $BOOSTLIBDIR/boost_system*.dll* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^\(boost_system.*\)\.dll.*$;\1;'` `ls $BOOSTLIBDIR/libboost_system*.a* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^\(boost_system.*\)\.a*$;\1;'` ; do
ax_lib=${libextension}
- as_ac_Lib=`echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
-echo "$as_me:$LINENO: checking for exit in -l$ax_lib" >&5
-echo $ECHO_N "checking for exit in -l$ax_lib... $ECHO_C" >&6
-if eval "test \"\${$as_ac_Lib+set}\" = set"; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ as_ac_Lib=`$as_echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
+{ $as_echo "$as_me:$LINENO: checking for exit in -l$ax_lib" >&5
+$as_echo_n "checking for exit in -l$ax_lib... " >&6; }
+if { as_var=$as_ac_Lib; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
else
ac_check_lib_save_LIBS=$LIBS
LIBS="-l$ax_lib $LIBS"
@@ -5737,57 +6414,62 @@ cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h. */
-/* Override any gcc2 internal prototype to avoid an error. */
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
#ifdef __cplusplus
extern "C"
#endif
-/* We use char because int might match the return type of a gcc2
- builtin and then its argument prototype would still apply. */
char exit ();
int
main ()
{
-exit ();
+return exit ();
;
return 0;
}
_ACEOF
rm -f conftest.$ac_objext conftest$ac_exeext
-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
- (eval $ac_link) 2>conftest.er1
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
eval "$as_ac_Lib=yes"
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-eval "$as_ac_Lib=no"
+ eval "$as_ac_Lib=no"
fi
-rm -f conftest.err conftest.$ac_objext \
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
conftest$ac_exeext conftest.$ac_ext
LIBS=$ac_check_lib_save_LIBS
fi
-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Lib'}'`" >&5
-echo "${ECHO_T}`eval echo '${'$as_ac_Lib'}'`" >&6
-if test `eval echo '${'$as_ac_Lib'}'` = yes; then
+ac_res=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+as_val=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
BOOST_SYSTEM_LIB="-l$ax_lib"; link_system="yes"; break
else
link_system="no"
@@ -5814,15 +6496,15 @@ ac_cpp='$CPP $CPPFLAGS'
ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
ac_compiler_gnu=$ac_cv_c_compiler_gnu
-echo "$as_me:$LINENO: checking how to run the C preprocessor" >&5
-echo $ECHO_N "checking how to run the C preprocessor... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking how to run the C preprocessor" >&5
+$as_echo_n "checking how to run the C preprocessor... " >&6; }
# On Suns, sometimes $CPP names a directory.
if test -n "$CPP" && test -d "$CPP"; then
CPP=
fi
if test -z "$CPP"; then
if test "${ac_cv_prog_CPP+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
# Double quotes because CPP needs to be expanded
for CPP in "$CC -E" "$CC -E -traditional-cpp" "/lib/cpp"
@@ -5849,35 +6531,35 @@ cat >>conftest.$ac_ext <<_ACEOF
#endif
Syntax error
_ACEOF
-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
+if { (ac_try="$ac_cpp conftest.$ac_ext"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } >/dev/null; then
- if test -s conftest.err; then
- ac_cpp_err=$ac_c_preproc_warn_flag
- ac_cpp_err=$ac_cpp_err$ac_c_werror_flag
- else
- ac_cpp_err=
- fi
-else
- ac_cpp_err=yes
-fi
-if test -z "$ac_cpp_err"; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } >/dev/null && {
+ test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ }; then
:
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
# Broken: fails on valid input.
continue
fi
+
rm -f conftest.err conftest.$ac_ext
- # OK, works on sane cases. Now check whether non-existent headers
+ # OK, works on sane cases. Now check whether nonexistent headers
# can be detected and how.
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
@@ -5887,34 +6569,34 @@ cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h. */
#include <ac_nonexistent.h>
_ACEOF
-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
+if { (ac_try="$ac_cpp conftest.$ac_ext"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } >/dev/null; then
- if test -s conftest.err; then
- ac_cpp_err=$ac_c_preproc_warn_flag
- ac_cpp_err=$ac_cpp_err$ac_c_werror_flag
- else
- ac_cpp_err=
- fi
-else
- ac_cpp_err=yes
-fi
-if test -z "$ac_cpp_err"; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } >/dev/null && {
+ test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ }; then
# Broken: success on invalid input.
continue
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
# Passes both tests.
ac_preproc_ok=:
break
fi
+
rm -f conftest.err conftest.$ac_ext
done
@@ -5932,8 +6614,8 @@ fi
else
ac_cv_prog_CPP=$CPP
fi
-echo "$as_me:$LINENO: result: $CPP" >&5
-echo "${ECHO_T}$CPP" >&6
+{ $as_echo "$as_me:$LINENO: result: $CPP" >&5
+$as_echo "$CPP" >&6; }
ac_preproc_ok=false
for ac_c_preproc_warn_flag in '' yes
do
@@ -5956,35 +6638,35 @@ cat >>conftest.$ac_ext <<_ACEOF
#endif
Syntax error
_ACEOF
-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
+if { (ac_try="$ac_cpp conftest.$ac_ext"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } >/dev/null; then
- if test -s conftest.err; then
- ac_cpp_err=$ac_c_preproc_warn_flag
- ac_cpp_err=$ac_cpp_err$ac_c_werror_flag
- else
- ac_cpp_err=
- fi
-else
- ac_cpp_err=yes
-fi
-if test -z "$ac_cpp_err"; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } >/dev/null && {
+ test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ }; then
:
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
# Broken: fails on valid input.
continue
fi
+
rm -f conftest.err conftest.$ac_ext
- # OK, works on sane cases. Now check whether non-existent headers
+ # OK, works on sane cases. Now check whether nonexistent headers
# can be detected and how.
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
@@ -5994,34 +6676,34 @@ cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h. */
#include <ac_nonexistent.h>
_ACEOF
-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
+if { (ac_try="$ac_cpp conftest.$ac_ext"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } >/dev/null; then
- if test -s conftest.err; then
- ac_cpp_err=$ac_c_preproc_warn_flag
- ac_cpp_err=$ac_cpp_err$ac_c_werror_flag
- else
- ac_cpp_err=
- fi
-else
- ac_cpp_err=yes
-fi
-if test -z "$ac_cpp_err"; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } >/dev/null && {
+ test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ }; then
# Broken: success on invalid input.
continue
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
# Passes both tests.
ac_preproc_ok=:
break
fi
+
rm -f conftest.err conftest.$ac_ext
done
@@ -6030,11 +6712,13 @@ rm -f conftest.err conftest.$ac_ext
if $ac_preproc_ok; then
:
else
- { { echo "$as_me:$LINENO: error: C preprocessor \"$CPP\" fails sanity check
+ { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+{ { $as_echo "$as_me:$LINENO: error: C preprocessor \"$CPP\" fails sanity check
See \`config.log' for more details." >&5
-echo "$as_me: error: C preprocessor \"$CPP\" fails sanity check
+$as_echo "$as_me: error: C preprocessor \"$CPP\" fails sanity check
See \`config.log' for more details." >&2;}
- { (exit 1); exit 1; }; }
+ { (exit 1); exit 1; }; }; }
fi
ac_ext=c
@@ -6044,25 +6728,144 @@ ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $
ac_compiler_gnu=$ac_cv_c_compiler_gnu
-echo "$as_me:$LINENO: checking for egrep" >&5
-echo $ECHO_N "checking for egrep... $ECHO_C" >&6
-if test "${ac_cv_prog_egrep+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for grep that handles long lines and -e" >&5
+$as_echo_n "checking for grep that handles long lines and -e... " >&6; }
+if test "${ac_cv_path_GREP+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -z "$GREP"; then
+ ac_path_GREP_found=false
+ # Loop through the user's path and test for each of PROGNAME-LIST
+ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH$PATH_SEPARATOR/usr/xpg4/bin
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_prog in grep ggrep; do
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ ac_path_GREP="$as_dir/$ac_prog$ac_exec_ext"
+ { test -f "$ac_path_GREP" && $as_test_x "$ac_path_GREP"; } || continue
+# Check for GNU ac_path_GREP and select it if it is found.
+ # Check for GNU $ac_path_GREP
+case `"$ac_path_GREP" --version 2>&1` in
+*GNU*)
+ ac_cv_path_GREP="$ac_path_GREP" ac_path_GREP_found=:;;
+*)
+ ac_count=0
+ $as_echo_n 0123456789 >"conftest.in"
+ while :
+ do
+ cat "conftest.in" "conftest.in" >"conftest.tmp"
+ mv "conftest.tmp" "conftest.in"
+ cp "conftest.in" "conftest.nl"
+ $as_echo 'GREP' >> "conftest.nl"
+ "$ac_path_GREP" -e 'GREP$' -e '-(cannot match)-' < "conftest.nl" >"conftest.out" 2>/dev/null || break
+ diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break
+ ac_count=`expr $ac_count + 1`
+ if test $ac_count -gt ${ac_path_GREP_max-0}; then
+ # Best one so far, save it but keep looking for a better one
+ ac_cv_path_GREP="$ac_path_GREP"
+ ac_path_GREP_max=$ac_count
+ fi
+ # 10*(2^10) chars as input seems more than enough
+ test $ac_count -gt 10 && break
+ done
+ rm -f conftest.in conftest.tmp conftest.nl conftest.out;;
+esac
+
+ $ac_path_GREP_found && break 3
+ done
+ done
+done
+IFS=$as_save_IFS
+ if test -z "$ac_cv_path_GREP"; then
+ { { $as_echo "$as_me:$LINENO: error: no acceptable grep could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" >&5
+$as_echo "$as_me: error: no acceptable grep could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+else
+ ac_cv_path_GREP=$GREP
+fi
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_path_GREP" >&5
+$as_echo "$ac_cv_path_GREP" >&6; }
+ GREP="$ac_cv_path_GREP"
+
+
+{ $as_echo "$as_me:$LINENO: checking for egrep" >&5
+$as_echo_n "checking for egrep... " >&6; }
+if test "${ac_cv_path_EGREP+set}" = set; then
+ $as_echo_n "(cached) " >&6
else
- if echo a | (grep -E '(a|b)') >/dev/null 2>&1
- then ac_cv_prog_egrep='grep -E'
- else ac_cv_prog_egrep='egrep'
+ if echo a | $GREP -E '(a|b)' >/dev/null 2>&1
+ then ac_cv_path_EGREP="$GREP -E"
+ else
+ if test -z "$EGREP"; then
+ ac_path_EGREP_found=false
+ # Loop through the user's path and test for each of PROGNAME-LIST
+ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH$PATH_SEPARATOR/usr/xpg4/bin
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_prog in egrep; do
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ ac_path_EGREP="$as_dir/$ac_prog$ac_exec_ext"
+ { test -f "$ac_path_EGREP" && $as_test_x "$ac_path_EGREP"; } || continue
+# Check for GNU ac_path_EGREP and select it if it is found.
+ # Check for GNU $ac_path_EGREP
+case `"$ac_path_EGREP" --version 2>&1` in
+*GNU*)
+ ac_cv_path_EGREP="$ac_path_EGREP" ac_path_EGREP_found=:;;
+*)
+ ac_count=0
+ $as_echo_n 0123456789 >"conftest.in"
+ while :
+ do
+ cat "conftest.in" "conftest.in" >"conftest.tmp"
+ mv "conftest.tmp" "conftest.in"
+ cp "conftest.in" "conftest.nl"
+ $as_echo 'EGREP' >> "conftest.nl"
+ "$ac_path_EGREP" 'EGREP$' < "conftest.nl" >"conftest.out" 2>/dev/null || break
+ diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break
+ ac_count=`expr $ac_count + 1`
+ if test $ac_count -gt ${ac_path_EGREP_max-0}; then
+ # Best one so far, save it but keep looking for a better one
+ ac_cv_path_EGREP="$ac_path_EGREP"
+ ac_path_EGREP_max=$ac_count
fi
+ # 10*(2^10) chars as input seems more than enough
+ test $ac_count -gt 10 && break
+ done
+ rm -f conftest.in conftest.tmp conftest.nl conftest.out;;
+esac
+
+ $ac_path_EGREP_found && break 3
+ done
+ done
+done
+IFS=$as_save_IFS
+ if test -z "$ac_cv_path_EGREP"; then
+ { { $as_echo "$as_me:$LINENO: error: no acceptable egrep could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" >&5
+$as_echo "$as_me: error: no acceptable egrep could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+else
+ ac_cv_path_EGREP=$EGREP
+fi
+
+ fi
fi
-echo "$as_me:$LINENO: result: $ac_cv_prog_egrep" >&5
-echo "${ECHO_T}$ac_cv_prog_egrep" >&6
- EGREP=$ac_cv_prog_egrep
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_path_EGREP" >&5
+$as_echo "$ac_cv_path_EGREP" >&6; }
+ EGREP="$ac_cv_path_EGREP"
-echo "$as_me:$LINENO: checking for ANSI C header files" >&5
-echo $ECHO_N "checking for ANSI C header files... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for ANSI C header files" >&5
+$as_echo_n "checking for ANSI C header files... " >&6; }
if test "${ac_cv_header_stdc+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
@@ -6084,35 +6887,32 @@ main ()
}
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
ac_cv_header_stdc=yes
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-ac_cv_header_stdc=no
+ ac_cv_header_stdc=no
fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
if test $ac_cv_header_stdc = yes; then
# SunOS 4.x string.h does not declare mem*, contrary to ANSI.
@@ -6168,6 +6968,7 @@ cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h. */
#include <ctype.h>
+#include <stdlib.h>
#if ((' ' & 0x0FF) == 0x020)
# define ISLOWER(c) ('a' <= (c) && (c) <= 'z')
# define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c))
@@ -6187,36 +6988,50 @@ main ()
for (i = 0; i < 256; i++)
if (XOR (islower (i), ISLOWER (i))
|| toupper (i) != TOUPPER (i))
- exit(2);
- exit (0);
+ return 2;
+ return 0;
}
_ACEOF
rm -f conftest$ac_exeext
-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
- (eval $ac_link) 2>&5
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>&5
ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
(exit $ac_status); } && { ac_try='./conftest$ac_exeext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
+ { (case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_try") 2>&5
ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
(exit $ac_status); }; }; then
:
else
- echo "$as_me: program exited with status $ac_status" >&5
-echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: program exited with status $ac_status" >&5
+$as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
( exit $ac_status )
ac_cv_header_stdc=no
fi
-rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+rm -rf conftest.dSYM
+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
fi
+
+
fi
fi
-echo "$as_me:$LINENO: result: $ac_cv_header_stdc" >&5
-echo "${ECHO_T}$ac_cv_header_stdc" >&6
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_header_stdc" >&5
+$as_echo "$ac_cv_header_stdc" >&6; }
if test $ac_cv_header_stdc = yes; then
cat >>confdefs.h <<\_ACEOF
@@ -6238,11 +7053,11 @@ fi
for ac_header in sys/types.h sys/stat.h stdlib.h string.h memory.h strings.h \
inttypes.h stdint.h unistd.h
do
-as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
-echo "$as_me:$LINENO: checking for $ac_header" >&5
-echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
-if eval "test \"\${$as_ac_Header+set}\" = set"; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+as_ac_Header=`$as_echo "ac_cv_header_$ac_header" | $as_tr_sh`
+{ $as_echo "$as_me:$LINENO: checking for $ac_header" >&5
+$as_echo_n "checking for $ac_header... " >&6; }
+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
else
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
@@ -6255,41 +7070,42 @@ $ac_includes_default
#include <$ac_header>
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
eval "$as_ac_Header=yes"
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-eval "$as_ac_Header=no"
+ eval "$as_ac_Header=no"
fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
fi
-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
-echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
-if test `eval echo '${'$as_ac_Header'}'` = yes; then
+ac_res=`eval 'as_val=${'$as_ac_Header'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+as_val=`eval 'as_val=${'$as_ac_Header'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
cat >>confdefs.h <<_ACEOF
-#define `echo "HAVE_$ac_header" | $as_tr_cpp` 1
+#define `$as_echo "HAVE_$ac_header" | $as_tr_cpp` 1
_ACEOF
fi
@@ -6300,30 +7116,30 @@ done
#
# Handle user hints
#
-echo "$as_me:$LINENO: checking if zlib is wanted" >&5
-echo $ECHO_N "checking if zlib is wanted... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking if zlib is wanted" >&5
+$as_echo_n "checking if zlib is wanted... " >&6; }
-# Check whether --with-zlib or --without-zlib was given.
+# Check whether --with-zlib was given.
if test "${with_zlib+set}" = set; then
- withval="$with_zlib"
- if test "$withval" != no ; then
- echo "$as_me:$LINENO: result: yes" >&5
-echo "${ECHO_T}yes" >&6
+ withval=$with_zlib; if test "$withval" != no ; then
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
if test -d "$withval"
then
ZLIB_HOME="$withval"
else
- { echo "$as_me:$LINENO: WARNING: Sorry, $withval does not exist, checking usual places" >&5
-echo "$as_me: WARNING: Sorry, $withval does not exist, checking usual places" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: Sorry, $withval does not exist, checking usual places" >&5
+$as_echo "$as_me: WARNING: Sorry, $withval does not exist, checking usual places" >&2;}
fi
else
- echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
fi
else
- echo "$as_me:$LINENO: result: yes" >&5
-echo "${ECHO_T}yes" >&6
-fi;
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+fi
+
ZLIB_HOME=/usr/local
if test ! -f "${ZLIB_HOME}/include/zlib.h"
@@ -6341,17 +7157,16 @@ then
LDFLAGS="$LDFLAGS -L${ZLIB_HOME}/lib"
CPPFLAGS="$CPPFLAGS -I${ZLIB_HOME}/include"
-
ac_ext=c
ac_cpp='$CPP $CPPFLAGS'
ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
ac_compiler_gnu=$ac_cv_c_compiler_gnu
- echo "$as_me:$LINENO: checking for inflateEnd in -lz" >&5
-echo $ECHO_N "checking for inflateEnd in -lz... $ECHO_C" >&6
+ { $as_echo "$as_me:$LINENO: checking for inflateEnd in -lz" >&5
+$as_echo_n "checking for inflateEnd in -lz... " >&6; }
if test "${ac_cv_lib_z_inflateEnd+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
ac_check_lib_save_LIBS=$LIBS
LIBS="-lz $LIBS"
@@ -6362,74 +7177,75 @@ cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h. */
-/* Override any gcc2 internal prototype to avoid an error. */
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
#ifdef __cplusplus
extern "C"
#endif
-/* We use char because int might match the return type of a gcc2
- builtin and then its argument prototype would still apply. */
char inflateEnd ();
int
main ()
{
-inflateEnd ();
+return inflateEnd ();
;
return 0;
}
_ACEOF
rm -f conftest.$ac_objext conftest$ac_exeext
-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
- (eval $ac_link) 2>conftest.er1
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
ac_cv_lib_z_inflateEnd=yes
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-ac_cv_lib_z_inflateEnd=no
+ ac_cv_lib_z_inflateEnd=no
fi
-rm -f conftest.err conftest.$ac_objext \
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
conftest$ac_exeext conftest.$ac_ext
LIBS=$ac_check_lib_save_LIBS
fi
-echo "$as_me:$LINENO: result: $ac_cv_lib_z_inflateEnd" >&5
-echo "${ECHO_T}$ac_cv_lib_z_inflateEnd" >&6
-if test $ac_cv_lib_z_inflateEnd = yes; then
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_z_inflateEnd" >&5
+$as_echo "$ac_cv_lib_z_inflateEnd" >&6; }
+if test "x$ac_cv_lib_z_inflateEnd" = x""yes; then
zlib_cv_libz=yes
else
zlib_cv_libz=no
fi
if test "${ac_cv_header_zlib_h+set}" = set; then
- echo "$as_me:$LINENO: checking for zlib.h" >&5
-echo $ECHO_N "checking for zlib.h... $ECHO_C" >&6
+ { $as_echo "$as_me:$LINENO: checking for zlib.h" >&5
+$as_echo_n "checking for zlib.h... " >&6; }
if test "${ac_cv_header_zlib_h+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
fi
-echo "$as_me:$LINENO: result: $ac_cv_header_zlib_h" >&5
-echo "${ECHO_T}$ac_cv_header_zlib_h" >&6
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_header_zlib_h" >&5
+$as_echo "$ac_cv_header_zlib_h" >&6; }
else
# Is the header compilable?
-echo "$as_me:$LINENO: checking zlib.h usability" >&5
-echo $ECHO_N "checking zlib.h usability... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking zlib.h usability" >&5
+$as_echo_n "checking zlib.h usability... " >&6; }
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
_ACEOF
@@ -6440,41 +7256,38 @@ $ac_includes_default
#include <zlib.h>
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
ac_header_compiler=yes
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-ac_header_compiler=no
+ ac_header_compiler=no
fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
-echo "${ECHO_T}$ac_header_compiler" >&6
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+{ $as_echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
+$as_echo "$ac_header_compiler" >&6; }
# Is the header present?
-echo "$as_me:$LINENO: checking zlib.h presence" >&5
-echo $ECHO_N "checking zlib.h presence... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking zlib.h presence" >&5
+$as_echo_n "checking zlib.h presence... " >&6; }
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
_ACEOF
@@ -6483,79 +7296,77 @@ cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h. */
#include <zlib.h>
_ACEOF
-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
+if { (ac_try="$ac_cpp conftest.$ac_ext"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } >/dev/null; then
- if test -s conftest.err; then
- ac_cpp_err=$ac_c_preproc_warn_flag
- ac_cpp_err=$ac_cpp_err$ac_c_werror_flag
- else
- ac_cpp_err=
- fi
-else
- ac_cpp_err=yes
-fi
-if test -z "$ac_cpp_err"; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } >/dev/null && {
+ test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ }; then
ac_header_preproc=yes
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
ac_header_preproc=no
fi
+
rm -f conftest.err conftest.$ac_ext
-echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
-echo "${ECHO_T}$ac_header_preproc" >&6
+{ $as_echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
+$as_echo "$ac_header_preproc" >&6; }
# So? What about this header?
case $ac_header_compiler:$ac_header_preproc:$ac_c_preproc_warn_flag in
yes:no: )
- { echo "$as_me:$LINENO: WARNING: zlib.h: accepted by the compiler, rejected by the preprocessor!" >&5
-echo "$as_me: WARNING: zlib.h: accepted by the compiler, rejected by the preprocessor!" >&2;}
- { echo "$as_me:$LINENO: WARNING: zlib.h: proceeding with the compiler's result" >&5
-echo "$as_me: WARNING: zlib.h: proceeding with the compiler's result" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: zlib.h: accepted by the compiler, rejected by the preprocessor!" >&5
+$as_echo "$as_me: WARNING: zlib.h: accepted by the compiler, rejected by the preprocessor!" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: zlib.h: proceeding with the compiler's result" >&5
+$as_echo "$as_me: WARNING: zlib.h: proceeding with the compiler's result" >&2;}
ac_header_preproc=yes
;;
no:yes:* )
- { echo "$as_me:$LINENO: WARNING: zlib.h: present but cannot be compiled" >&5
-echo "$as_me: WARNING: zlib.h: present but cannot be compiled" >&2;}
- { echo "$as_me:$LINENO: WARNING: zlib.h: check for missing prerequisite headers?" >&5
-echo "$as_me: WARNING: zlib.h: check for missing prerequisite headers?" >&2;}
- { echo "$as_me:$LINENO: WARNING: zlib.h: see the Autoconf documentation" >&5
-echo "$as_me: WARNING: zlib.h: see the Autoconf documentation" >&2;}
- { echo "$as_me:$LINENO: WARNING: zlib.h: section \"Present But Cannot Be Compiled\"" >&5
-echo "$as_me: WARNING: zlib.h: section \"Present But Cannot Be Compiled\"" >&2;}
- { echo "$as_me:$LINENO: WARNING: zlib.h: proceeding with the preprocessor's result" >&5
-echo "$as_me: WARNING: zlib.h: proceeding with the preprocessor's result" >&2;}
- { echo "$as_me:$LINENO: WARNING: zlib.h: in the future, the compiler will take precedence" >&5
-echo "$as_me: WARNING: zlib.h: in the future, the compiler will take precedence" >&2;}
- (
- cat <<\_ASBOX
+ { $as_echo "$as_me:$LINENO: WARNING: zlib.h: present but cannot be compiled" >&5
+$as_echo "$as_me: WARNING: zlib.h: present but cannot be compiled" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: zlib.h: check for missing prerequisite headers?" >&5
+$as_echo "$as_me: WARNING: zlib.h: check for missing prerequisite headers?" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: zlib.h: see the Autoconf documentation" >&5
+$as_echo "$as_me: WARNING: zlib.h: see the Autoconf documentation" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: zlib.h: section \"Present But Cannot Be Compiled\"" >&5
+$as_echo "$as_me: WARNING: zlib.h: section \"Present But Cannot Be Compiled\"" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: zlib.h: proceeding with the preprocessor's result" >&5
+$as_echo "$as_me: WARNING: zlib.h: proceeding with the preprocessor's result" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: zlib.h: in the future, the compiler will take precedence" >&5
+$as_echo "$as_me: WARNING: zlib.h: in the future, the compiler will take precedence" >&2;}
+ ( cat <<\_ASBOX
## ------------------------------ ##
## Report this to cole at cs.umd.edu ##
## ------------------------------ ##
_ASBOX
- ) |
- sed "s/^/$as_me: WARNING: /" >&2
+ ) | sed "s/^/$as_me: WARNING: /" >&2
;;
esac
-echo "$as_me:$LINENO: checking for zlib.h" >&5
-echo $ECHO_N "checking for zlib.h... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for zlib.h" >&5
+$as_echo_n "checking for zlib.h... " >&6; }
if test "${ac_cv_header_zlib_h+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
ac_cv_header_zlib_h=$ac_header_preproc
fi
-echo "$as_me:$LINENO: result: $ac_cv_header_zlib_h" >&5
-echo "${ECHO_T}$ac_cv_header_zlib_h" >&6
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_header_zlib_h" >&5
+$as_echo "$ac_cv_header_zlib_h" >&6; }
fi
-if test $ac_cv_header_zlib_h = yes; then
+if test "x$ac_cv_header_zlib_h" = x""yes; then
zlib_cv_zlib_h=yes
else
zlib_cv_zlib_h=no
@@ -6574,10 +7385,10 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu
# If both library and header were found, use them
#
-echo "$as_me:$LINENO: checking for inflateEnd in -lz" >&5
-echo $ECHO_N "checking for inflateEnd in -lz... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for inflateEnd in -lz" >&5
+$as_echo_n "checking for inflateEnd in -lz... " >&6; }
if test "${ac_cv_lib_z_inflateEnd+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
ac_check_lib_save_LIBS=$LIBS
LIBS="-lz $LIBS"
@@ -6588,57 +7399,58 @@ cat confdefs.h >>conftest.$ac_ext
cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h. */
-/* Override any gcc2 internal prototype to avoid an error. */
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
#ifdef __cplusplus
extern "C"
#endif
-/* We use char because int might match the return type of a gcc2
- builtin and then its argument prototype would still apply. */
char inflateEnd ();
int
main ()
{
-inflateEnd ();
+return inflateEnd ();
;
return 0;
}
_ACEOF
rm -f conftest.$ac_objext conftest$ac_exeext
-if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
- (eval $ac_link) 2>conftest.er1
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
ac_cv_lib_z_inflateEnd=yes
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-ac_cv_lib_z_inflateEnd=no
+ ac_cv_lib_z_inflateEnd=no
fi
-rm -f conftest.err conftest.$ac_objext \
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
conftest$ac_exeext conftest.$ac_ext
LIBS=$ac_check_lib_save_LIBS
fi
-echo "$as_me:$LINENO: result: $ac_cv_lib_z_inflateEnd" >&5
-echo "${ECHO_T}$ac_cv_lib_z_inflateEnd" >&6
-if test $ac_cv_lib_z_inflateEnd = yes; then
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_z_inflateEnd" >&5
+$as_echo "$ac_cv_lib_z_inflateEnd" >&6; }
+if test "x$ac_cv_lib_z_inflateEnd" = x""yes; then
cat >>confdefs.h <<_ACEOF
#define HAVE_LIBZ 1
_ACEOF
@@ -6647,24 +7459,24 @@ _ACEOF
fi
- echo "$as_me:$LINENO: checking zlib in ${ZLIB_HOME}" >&5
-echo $ECHO_N "checking zlib in ${ZLIB_HOME}... $ECHO_C" >&6
- echo "$as_me:$LINENO: result: ok" >&5
-echo "${ECHO_T}ok" >&6
+ { $as_echo "$as_me:$LINENO: checking zlib in ${ZLIB_HOME}" >&5
+$as_echo_n "checking zlib in ${ZLIB_HOME}... " >&6; }
+ { $as_echo "$as_me:$LINENO: result: ok" >&5
+$as_echo "ok" >&6; }
ZLIB="-lz"
else
#
# If either header or library was not found, revert and bomb
#
- echo "$as_me:$LINENO: checking zlib in ${ZLIB_HOME}" >&5
-echo $ECHO_N "checking zlib in ${ZLIB_HOME}... $ECHO_C" >&6
+ { $as_echo "$as_me:$LINENO: checking zlib in ${ZLIB_HOME}" >&5
+$as_echo_n "checking zlib in ${ZLIB_HOME}... " >&6; }
LDFLAGS="$ZLIB_OLD_LDFLAGS"
CPPFLAGS="$ZLIB_OLD_CPPFLAGS"
- echo "$as_me:$LINENO: result: failed" >&5
-echo "${ECHO_T}failed" >&6
- { { echo "$as_me:$LINENO: error: either specify a valid zlib installation with --with-zlib=DIR or disable zlib usage with --without-zlib" >&5
-echo "$as_me: error: either specify a valid zlib installation with --with-zlib=DIR or disable zlib usage with --without-zlib" >&2;}
+ { $as_echo "$as_me:$LINENO: result: failed" >&5
+$as_echo "failed" >&6; }
+ { { $as_echo "$as_me:$LINENO: error: either specify a valid zlib installation with --with-zlib=DIR or disable zlib usage with --without-zlib" >&5
+$as_echo "$as_me: error: either specify a valid zlib installation with --with-zlib=DIR or disable zlib usage with --without-zlib" >&2;}
{ (exit 1); exit 1; }; }
fi
fi
@@ -6672,10 +7484,9 @@ fi
-# Check whether --with-eigen or --without-eigen was given.
+# Check whether --with-eigen was given.
if test "${with_eigen+set}" = set; then
- withval="$with_eigen"
-
+ withval=$with_eigen;
if test "$withval" = "no"; then
want_eigen="no"
elif test "$withval" = "yes"; then
@@ -6688,11 +7499,12 @@ fi
else
want_eigen="yes"
-fi;
+fi
+
if test "x$want_eigen" = "xyes"; then
-echo "$as_me:$LINENO: checking for eigenlib" >&5
-echo $ECHO_N "checking for eigenlib... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for eigenlib" >&5
+$as_echo_n "checking for eigenlib... " >&6; }
succeeded=no
if test "$ac_eigen_path" != ""; then
@@ -6710,7 +7522,7 @@ CPPFLAGS_SAVED="$CPPFLAGS"
CPPFLAGS="$CPPFLAGS $EIGEN_CPPFLAGS"
export EIGEN_CPPFLAGS
-ac_ext=cc
+ac_ext=cpp
ac_cpp='$CXXCPP $CPPFLAGS'
ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
@@ -6735,41 +7547,38 @@ main ()
}
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_cxx_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
-
-echo "$as_me:$LINENO: result: yes" >&5
-echo "${ECHO_T}yes" >&6
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+
+{ $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
succeeded=yes
found_system=yes
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
ac_ext=c
ac_cpp='$CPP $CPPFLAGS'
ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
@@ -6787,7 +7596,7 @@ if test "$succeeded" == "yes" ; then
cat >>confdefs.h <<\_ACEOF
-#define HAVE_EIGEN
+#define HAVE_EIGEN /**/
_ACEOF
fi
@@ -6803,19 +7612,21 @@ fi
for ac_header in stdlib.h string.h unistd.h
do
-as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
-if eval "test \"\${$as_ac_Header+set}\" = set"; then
- echo "$as_me:$LINENO: checking for $ac_header" >&5
-echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
-if eval "test \"\${$as_ac_Header+set}\" = set"; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
-fi
-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
-echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
+as_ac_Header=`$as_echo "ac_cv_header_$ac_header" | $as_tr_sh`
+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ { $as_echo "$as_me:$LINENO: checking for $ac_header" >&5
+$as_echo_n "checking for $ac_header... " >&6; }
+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
+fi
+ac_res=`eval 'as_val=${'$as_ac_Header'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
else
# Is the header compilable?
-echo "$as_me:$LINENO: checking $ac_header usability" >&5
-echo $ECHO_N "checking $ac_header usability... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking $ac_header usability" >&5
+$as_echo_n "checking $ac_header usability... " >&6; }
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
_ACEOF
@@ -6826,41 +7637,38 @@ $ac_includes_default
#include <$ac_header>
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
ac_header_compiler=yes
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-ac_header_compiler=no
+ ac_header_compiler=no
fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
-echo "${ECHO_T}$ac_header_compiler" >&6
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+{ $as_echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
+$as_echo "$ac_header_compiler" >&6; }
# Is the header present?
-echo "$as_me:$LINENO: checking $ac_header presence" >&5
-echo $ECHO_N "checking $ac_header presence... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking $ac_header presence" >&5
+$as_echo_n "checking $ac_header presence... " >&6; }
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
_ACEOF
@@ -6869,81 +7677,83 @@ cat >>conftest.$ac_ext <<_ACEOF
/* end confdefs.h. */
#include <$ac_header>
_ACEOF
-if { (eval echo "$as_me:$LINENO: \"$ac_cpp conftest.$ac_ext\"") >&5
- (eval $ac_cpp conftest.$ac_ext) 2>conftest.er1
+if { (ac_try="$ac_cpp conftest.$ac_ext"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } >/dev/null; then
- if test -s conftest.err; then
- ac_cpp_err=$ac_c_preproc_warn_flag
- ac_cpp_err=$ac_cpp_err$ac_c_werror_flag
- else
- ac_cpp_err=
- fi
-else
- ac_cpp_err=yes
-fi
-if test -z "$ac_cpp_err"; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } >/dev/null && {
+ test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ }; then
ac_header_preproc=yes
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
ac_header_preproc=no
fi
+
rm -f conftest.err conftest.$ac_ext
-echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
-echo "${ECHO_T}$ac_header_preproc" >&6
+{ $as_echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
+$as_echo "$ac_header_preproc" >&6; }
# So? What about this header?
case $ac_header_compiler:$ac_header_preproc:$ac_c_preproc_warn_flag in
yes:no: )
- { echo "$as_me:$LINENO: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&5
-echo "$as_me: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&2;}
- { echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the compiler's result" >&5
-echo "$as_me: WARNING: $ac_header: proceeding with the compiler's result" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&5
+$as_echo "$as_me: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the compiler's result" >&5
+$as_echo "$as_me: WARNING: $ac_header: proceeding with the compiler's result" >&2;}
ac_header_preproc=yes
;;
no:yes:* )
- { echo "$as_me:$LINENO: WARNING: $ac_header: present but cannot be compiled" >&5
-echo "$as_me: WARNING: $ac_header: present but cannot be compiled" >&2;}
- { echo "$as_me:$LINENO: WARNING: $ac_header: check for missing prerequisite headers?" >&5
-echo "$as_me: WARNING: $ac_header: check for missing prerequisite headers?" >&2;}
- { echo "$as_me:$LINENO: WARNING: $ac_header: see the Autoconf documentation" >&5
-echo "$as_me: WARNING: $ac_header: see the Autoconf documentation" >&2;}
- { echo "$as_me:$LINENO: WARNING: $ac_header: section \"Present But Cannot Be Compiled\"" >&5
-echo "$as_me: WARNING: $ac_header: section \"Present But Cannot Be Compiled\"" >&2;}
- { echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the preprocessor's result" >&5
-echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
- { echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
-echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
- (
- cat <<\_ASBOX
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: present but cannot be compiled" >&5
+$as_echo "$as_me: WARNING: $ac_header: present but cannot be compiled" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: check for missing prerequisite headers?" >&5
+$as_echo "$as_me: WARNING: $ac_header: check for missing prerequisite headers?" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: see the Autoconf documentation" >&5
+$as_echo "$as_me: WARNING: $ac_header: see the Autoconf documentation" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: section \"Present But Cannot Be Compiled\"" >&5
+$as_echo "$as_me: WARNING: $ac_header: section \"Present But Cannot Be Compiled\"" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the preprocessor's result" >&5
+$as_echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
+$as_echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
+ ( cat <<\_ASBOX
## ------------------------------ ##
## Report this to cole at cs.umd.edu ##
## ------------------------------ ##
_ASBOX
- ) |
- sed "s/^/$as_me: WARNING: /" >&2
+ ) | sed "s/^/$as_me: WARNING: /" >&2
;;
esac
-echo "$as_me:$LINENO: checking for $ac_header" >&5
-echo $ECHO_N "checking for $ac_header... $ECHO_C" >&6
-if eval "test \"\${$as_ac_Header+set}\" = set"; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for $ac_header" >&5
+$as_echo_n "checking for $ac_header... " >&6; }
+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
else
eval "$as_ac_Header=\$ac_header_preproc"
fi
-echo "$as_me:$LINENO: result: `eval echo '${'$as_ac_Header'}'`" >&5
-echo "${ECHO_T}`eval echo '${'$as_ac_Header'}'`" >&6
+ac_res=`eval 'as_val=${'$as_ac_Header'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
fi
-if test `eval echo '${'$as_ac_Header'}'` = yes; then
+as_val=`eval 'as_val=${'$as_ac_Header'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
cat >>confdefs.h <<_ACEOF
-#define `echo "HAVE_$ac_header" | $as_tr_cpp` 1
+#define `$as_echo "HAVE_$ac_header" | $as_tr_cpp` 1
_ACEOF
fi
@@ -6952,10 +7762,10 @@ done
# Checks for typedefs, structures, and compiler characteristics.
-echo "$as_me:$LINENO: checking for stdbool.h that conforms to C99" >&5
-echo $ECHO_N "checking for stdbool.h that conforms to C99... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for stdbool.h that conforms to C99" >&5
+$as_echo_n "checking for stdbool.h that conforms to C99... " >&6; }
if test "${ac_cv_header_stdbool_h+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
@@ -6966,22 +7776,22 @@ cat >>conftest.$ac_ext <<_ACEOF
#include <stdbool.h>
#ifndef bool
-# error bool is not defined
+ "error: bool is not defined"
#endif
#ifndef false
-# error false is not defined
+ "error: false is not defined"
#endif
#if false
-# error false is not 0
+ "error: false is not 0"
#endif
#ifndef true
-# error true is not defined
+ "error: true is not defined"
#endif
#if true != 1
-# error true is not 1
+ "error: true is not 1"
#endif
#ifndef __bool_true_false_are_defined
-# error __bool_true_false_are_defined is not defined
+ "error: __bool_true_false_are_defined is not defined"
#endif
struct s { _Bool s: 1; _Bool t; } s;
@@ -6989,60 +7799,95 @@ cat >>conftest.$ac_ext <<_ACEOF
char a[true == 1 ? 1 : -1];
char b[false == 0 ? 1 : -1];
char c[__bool_true_false_are_defined == 1 ? 1 : -1];
- char d[(bool) -0.5 == true ? 1 : -1];
+ char d[(bool) 0.5 == true ? 1 : -1];
bool e = &s;
- char f[(_Bool) -0.0 == false ? 1 : -1];
+ char f[(_Bool) 0.0 == false ? 1 : -1];
char g[true];
char h[sizeof (_Bool)];
char i[sizeof s.t];
+ enum { j = false, k = true, l = false * true, m = true * 256 };
+ /* The following fails for
+ HP aC++/ANSI C B3910B A.05.55 [Dec 04 2003]. */
+ _Bool n[m];
+ char o[sizeof n == m * sizeof n[0] ? 1 : -1];
+ char p[-1 - (_Bool) 0 < 0 && -1 - (bool) 0 < 0 ? 1 : -1];
+# if defined __xlc__ || defined __GNUC__
+ /* Catch a bug in IBM AIX xlc compiler version 6.0.0.0
+ reported by James Lemley on 2005-10-05; see
+ http://lists.gnu.org/archive/html/bug-coreutils/2005-10/msg00086.html
+ This test is not quite right, since xlc is allowed to
+ reject this program, as the initializer for xlcbug is
+ not one of the forms that C requires support for.
+ However, doing the test right would require a runtime
+ test, and that would make cross-compilation harder.
+ Let us hope that IBM fixes the xlc bug, and also adds
+ support for this kind of constant expression. In the
+ meantime, this test will reject xlc, which is OK, since
+ our stdbool.h substitute should suffice. We also test
+ this with GCC, where it should work, to detect more
+ quickly whether someone messes up the test in the
+ future. */
+ char digs[] = "0123456789";
+ int xlcbug = 1 / (&(digs + 5)[-2 + (bool) 1] == &digs[4] ? 1 : -1);
+# endif
+ /* Catch a bug in an HP-UX C compiler. See
+ http://gcc.gnu.org/ml/gcc-patches/2003-12/msg02303.html
+ http://lists.gnu.org/archive/html/bug-coreutils/2005-11/msg00161.html
+ */
+ _Bool q = true;
+ _Bool *pq = &q;
int
main ()
{
- return !a + !b + !c + !d + !e + !f + !g + !h + !i;
+
+ *pq |= q;
+ *pq |= ! q;
+ /* Refer to every declared value, to avoid compiler optimizations. */
+ return (!a + !b + !c + !d + !e + !f + !g + !h + !i + !!j + !k + !!l
+ + !m + !n + !o + !p + !q + !pq);
+
;
return 0;
}
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
ac_cv_header_stdbool_h=yes
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-ac_cv_header_stdbool_h=no
+ ac_cv_header_stdbool_h=no
fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
fi
-echo "$as_me:$LINENO: result: $ac_cv_header_stdbool_h" >&5
-echo "${ECHO_T}$ac_cv_header_stdbool_h" >&6
-echo "$as_me:$LINENO: checking for _Bool" >&5
-echo $ECHO_N "checking for _Bool... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_header_stdbool_h" >&5
+$as_echo "$ac_cv_header_stdbool_h" >&6; }
+{ $as_echo "$as_me:$LINENO: checking for _Bool" >&5
+$as_echo_n "checking for _Bool... " >&6; }
if test "${ac_cv_type__Bool+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
- cat >conftest.$ac_ext <<_ACEOF
+ ac_cv_type__Bool=no
+cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
@@ -7052,48 +7897,85 @@ $ac_includes_default
int
main ()
{
-if ((_Bool *) 0)
- return 0;
if (sizeof (_Bool))
- return 0;
+ return 0;
;
return 0;
}
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+$ac_includes_default
+int
+main ()
+{
+if (sizeof ((_Bool)))
+ return 0;
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
- ac_cv_type__Bool=yes
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ :
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_type__Bool=yes
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-ac_cv_type__Bool=no
+
fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
fi
-echo "$as_me:$LINENO: result: $ac_cv_type__Bool" >&5
-echo "${ECHO_T}$ac_cv_type__Bool" >&6
-if test $ac_cv_type__Bool = yes; then
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_type__Bool" >&5
+$as_echo "$ac_cv_type__Bool" >&6; }
+if test "x$ac_cv_type__Bool" = x""yes; then
cat >>confdefs.h <<_ACEOF
#define HAVE__BOOL 1
@@ -7110,10 +7992,10 @@ _ACEOF
fi
-echo "$as_me:$LINENO: checking for inline" >&5
-echo $ECHO_N "checking for inline... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for inline" >&5
+$as_echo_n "checking for inline... " >&6; }
if test "${ac_cv_c_inline+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
ac_cv_c_inline=no
for ac_kw in inline __inline__ __inline; do
@@ -7131,39 +8013,38 @@ $ac_kw foo_t foo () {return 0; }
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
- ac_cv_c_inline=$ac_kw; break
-else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_cv_c_inline=$ac_kw
+else
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
+
fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ test "$ac_cv_c_inline" != no && break
done
fi
-echo "$as_me:$LINENO: result: $ac_cv_c_inline" >&5
-echo "${ECHO_T}$ac_cv_c_inline" >&6
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_c_inline" >&5
+$as_echo "$ac_cv_c_inline" >&6; }
case $ac_cv_c_inline in
@@ -7181,12 +8062,13 @@ _ACEOF
;;
esac
-echo "$as_me:$LINENO: checking for pid_t" >&5
-echo $ECHO_N "checking for pid_t... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for pid_t" >&5
+$as_echo_n "checking for pid_t... " >&6; }
if test "${ac_cv_type_pid_t+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
- cat >conftest.$ac_ext <<_ACEOF
+ ac_cv_type_pid_t=no
+cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
@@ -7196,63 +8078,101 @@ $ac_includes_default
int
main ()
{
-if ((pid_t *) 0)
- return 0;
if (sizeof (pid_t))
- return 0;
+ return 0;
;
return 0;
}
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
- ac_cv_type_pid_t=yes
-else
- echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-ac_cv_type_pid_t=no
-fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
-fi
-echo "$as_me:$LINENO: result: $ac_cv_type_pid_t" >&5
-echo "${ECHO_T}$ac_cv_type_pid_t" >&6
-if test $ac_cv_type_pid_t = yes; then
- :
-else
-
-cat >>confdefs.h <<_ACEOF
-#define pid_t int
-_ACEOF
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+$ac_includes_default
+int
+main ()
+{
+if (sizeof ((pid_t)))
+ return 0;
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ :
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_type_pid_t=yes
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_type_pid_t" >&5
+$as_echo "$ac_cv_type_pid_t" >&6; }
+if test "x$ac_cv_type_pid_t" = x""yes; then
+ :
+else
+
+cat >>confdefs.h <<_ACEOF
+#define pid_t int
+_ACEOF
fi
-echo "$as_me:$LINENO: checking for size_t" >&5
-echo $ECHO_N "checking for size_t... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for size_t" >&5
+$as_echo_n "checking for size_t... " >&6; }
if test "${ac_cv_type_size_t+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
- cat >conftest.$ac_ext <<_ACEOF
+ ac_cv_type_size_t=no
+cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
@@ -7262,63 +8182,101 @@ $ac_includes_default
int
main ()
{
-if ((size_t *) 0)
- return 0;
if (sizeof (size_t))
- return 0;
+ return 0;
;
return 0;
}
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+$ac_includes_default
+int
+main ()
+{
+if (sizeof ((size_t)))
+ return 0;
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
- ac_cv_type_size_t=yes
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ :
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_type_size_t=yes
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-ac_cv_type_size_t=no
+
fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
fi
-echo "$as_me:$LINENO: result: $ac_cv_type_size_t" >&5
-echo "${ECHO_T}$ac_cv_type_size_t" >&6
-if test $ac_cv_type_size_t = yes; then
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_type_size_t" >&5
+$as_echo "$ac_cv_type_size_t" >&6; }
+if test "x$ac_cv_type_size_t" = x""yes; then
:
else
cat >>confdefs.h <<_ACEOF
-#define size_t unsigned
+#define size_t unsigned int
_ACEOF
fi
-echo "$as_me:$LINENO: checking for ptrdiff_t" >&5
-echo $ECHO_N "checking for ptrdiff_t... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for ptrdiff_t" >&5
+$as_echo_n "checking for ptrdiff_t... " >&6; }
if test "${ac_cv_type_ptrdiff_t+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
- cat >conftest.$ac_ext <<_ACEOF
+ ac_cv_type_ptrdiff_t=no
+cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
@@ -7328,48 +8286,85 @@ $ac_includes_default
int
main ()
{
-if ((ptrdiff_t *) 0)
- return 0;
if (sizeof (ptrdiff_t))
- return 0;
+ return 0;
;
return 0;
}
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+$ac_includes_default
+int
+main ()
+{
+if (sizeof ((ptrdiff_t)))
+ return 0;
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
- ac_cv_type_ptrdiff_t=yes
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ :
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_type_ptrdiff_t=yes
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-ac_cv_type_ptrdiff_t=no
+
fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
fi
-echo "$as_me:$LINENO: result: $ac_cv_type_ptrdiff_t" >&5
-echo "${ECHO_T}$ac_cv_type_ptrdiff_t" >&6
-if test $ac_cv_type_ptrdiff_t = yes; then
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_type_ptrdiff_t" >&5
+$as_echo "$ac_cv_type_ptrdiff_t" >&6; }
+if test "x$ac_cv_type_ptrdiff_t" = x""yes; then
cat >>confdefs.h <<_ACEOF
#define HAVE_PTRDIFF_T 1
@@ -7385,26 +8380,41 @@ fi
#AC_CHECK_FUNCS([floor memmove pow regcomp sqrt strchr strcspn strspn strstr])
# check the platform
-echo "$as_me:$LINENO: checking host system type" >&5
-echo $ECHO_N "checking host system type... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking host system type" >&5
+$as_echo_n "checking host system type... " >&6; }
if test "${ac_cv_host+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
-else
- ac_cv_host_alias=$host_alias
-test -z "$ac_cv_host_alias" &&
- ac_cv_host_alias=$ac_cv_build_alias
-ac_cv_host=`$ac_config_sub $ac_cv_host_alias` ||
- { { echo "$as_me:$LINENO: error: $ac_config_sub $ac_cv_host_alias failed" >&5
-echo "$as_me: error: $ac_config_sub $ac_cv_host_alias failed" >&2;}
+ $as_echo_n "(cached) " >&6
+else
+ if test "x$host_alias" = x; then
+ ac_cv_host=$ac_cv_build
+else
+ ac_cv_host=`$SHELL "$ac_aux_dir/config.sub" $host_alias` ||
+ { { $as_echo "$as_me:$LINENO: error: $SHELL $ac_aux_dir/config.sub $host_alias failed" >&5
+$as_echo "$as_me: error: $SHELL $ac_aux_dir/config.sub $host_alias failed" >&2;}
{ (exit 1); exit 1; }; }
+fi
fi
-echo "$as_me:$LINENO: result: $ac_cv_host" >&5
-echo "${ECHO_T}$ac_cv_host" >&6
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_host" >&5
+$as_echo "$ac_cv_host" >&6; }
+case $ac_cv_host in
+*-*-*) ;;
+*) { { $as_echo "$as_me:$LINENO: error: invalid value of canonical host" >&5
+$as_echo "$as_me: error: invalid value of canonical host" >&2;}
+ { (exit 1); exit 1; }; };;
+esac
host=$ac_cv_host
-host_cpu=`echo $ac_cv_host | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\1/'`
-host_vendor=`echo $ac_cv_host | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\2/'`
-host_os=`echo $ac_cv_host | sed 's/^\([^-]*\)-\([^-]*\)-\(.*\)$/\3/'`
+ac_save_IFS=$IFS; IFS='-'
+set x $ac_cv_host
+shift
+host_cpu=$1
+host_vendor=$2
+shift; shift
+# Remember, the first character of IFS is used to create $*,
+# except with old shells:
+host_os=$*
+IFS=$ac_save_IFS
+case $host_os in *\ *) host_os=`echo "$host_os" | sed 's/ /-/g'`;; esac
@@ -7435,37 +8445,35 @@ main ()
}
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
ext_CFLAGS="-arch x86_64"
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
+
fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext;;
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext;;
*)
- echo "$as_me:$LINENO: checking if gcc accepts -m64" >&5
-echo $ECHO_N "checking if gcc accepts -m64... $ECHO_C" >&6
+ { $as_echo "$as_me:$LINENO: checking if gcc accepts -m64" >&5
+$as_echo_n "checking if gcc accepts -m64... " >&6; }
CFLAGS="-m64"
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
@@ -7483,67 +8491,64 @@ main ()
}
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
- ext_CFLAGS="-m64"; echo "$as_me:$LINENO: result: yes" >&5
-echo "${ECHO_T}yes" >&6
-else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ext_CFLAGS="-m64"; { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+else
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-ext_CFLAGS="-D_FILE_OFFSET_BITS=64"; echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
+ ext_CFLAGS="-D_FILE_OFFSET_BITS=64"; { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext;;
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext;;
esac
-# Check whether --enable-vectorize or --disable-vectorize was given.
+# Check whether --enable-vectorize was given.
if test "${enable_vectorize+set}" = set; then
- enableval="$enable_vectorize"
- ext_CFLAGS="${ext_CFLAGS} -ftree-vectorize -msse3 -ffast-math -ftree-vectorizer-verbose=99"
-fi;
+ enableval=$enable_vectorize; ext_CFLAGS="${ext_CFLAGS} -ftree-vectorize -msse3 -ffast-math -ftree-vectorizer-verbose=99"
+fi
+
-# Check whether --enable-intel64 or --disable-intel64 was given.
+# Check whether --enable-intel64 was given.
if test "${enable_intel64+set}" = set; then
- enableval="$enable_intel64"
- ext_CFLAGS="${ext_CFLAGS} -march=nocona"
-fi;
+ enableval=$enable_intel64; ext_CFLAGS="${ext_CFLAGS} -march=nocona"
+fi
-# Check whether --enable-debug or --disable-debug was given.
-if test "${enable_debug+set}" = set; then
- enableval="$enable_debug"
+# Check whether --enable-debug was given.
+if test "${enable_debug+set}" = set; then
+ enableval=$enable_debug;
else
enable_debug=no
-fi;
+fi
-# Check whether --enable-optim or --disable-optim was given.
+
+# Check whether --enable-optim was given.
if test "${enable_optim+set}" = set; then
- enableval="$enable_optim"
- if test "x$enable_optim" = xyes; then enable_optim=3; fi
+ enableval=$enable_optim; if test "x$enable_optim" = xyes; then enable_optim=3; fi
else
enable_optim=3
-fi;
+fi
+
if test "x$enable_optim" != xno; then
ext_CFLAGS="$ext_CFLAGS -O$enable_optim"
@@ -7557,11 +8562,11 @@ else
fi
-# Check whether --enable-profiling or --disable-profiling was given.
+# Check whether --enable-profiling was given.
if test "${enable_profiling+set}" = set; then
- enableval="$enable_profiling"
- ext_LDFLAGS="-lprofiler -ltcmalloc"
-fi;
+ enableval=$enable_profiling; ext_LDFLAGS="-lprofiler -ltcmalloc"
+fi
+
CFLAGS="${generic_CFLAGS} ${ext_CFLAGS} ${user_CFLAGS} ${debug_CFLAGS} ${OPENMP_CFLAGS}"
CXXFLAGS="$CFLAGS"
@@ -7570,10 +8575,10 @@ user_LDFLAGS="$LDFLAGS"
LDFLAGS="${ext_LDFLAGS} ${user_LDFLAGS}"
# Checks for structures/functions that can be used to determine system memory
-echo "$as_me:$LINENO: checking for struct sysinfo.totalram" >&5
-echo $ECHO_N "checking for struct sysinfo.totalram... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for struct sysinfo.totalram" >&5
+$as_echo_n "checking for struct sysinfo.totalram... " >&6; }
if test "${ac_cv_member_struct_sysinfo_totalram+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
@@ -7594,33 +8599,29 @@ return 0;
}
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
ac_cv_member_struct_sysinfo_totalram=yes
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-cat >conftest.$ac_ext <<_ACEOF
+ cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
@@ -7639,41 +8640,39 @@ return 0;
}
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
ac_cv_member_struct_sysinfo_totalram=yes
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-ac_cv_member_struct_sysinfo_totalram=no
+ ac_cv_member_struct_sysinfo_totalram=no
fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
fi
-echo "$as_me:$LINENO: result: $ac_cv_member_struct_sysinfo_totalram" >&5
-echo "${ECHO_T}$ac_cv_member_struct_sysinfo_totalram" >&6
-if test $ac_cv_member_struct_sysinfo_totalram = yes; then
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_member_struct_sysinfo_totalram" >&5
+$as_echo "$ac_cv_member_struct_sysinfo_totalram" >&6; }
+if test "x$ac_cv_member_struct_sysinfo_totalram" = x""yes; then
cat >>confdefs.h <<_ACEOF
#define HAVE_STRUCT_SYSINFO_TOTALRAM 1
@@ -7682,10 +8681,10 @@ _ACEOF
fi
-echo "$as_me:$LINENO: checking whether sysctl is declared" >&5
-echo $ECHO_N "checking whether sysctl is declared... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking whether sysctl is declared" >&5
+$as_echo_n "checking whether sysctl is declared... " >&6; }
if test "${ac_cv_have_decl_sysctl+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
@@ -7699,7 +8698,7 @@ int
main ()
{
#ifndef sysctl
- char *p = (char *) sysctl;
+ (void) sysctl;
#endif
;
@@ -7707,39 +8706,36 @@ main ()
}
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
ac_cv_have_decl_sysctl=yes
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-ac_cv_have_decl_sysctl=no
+ ac_cv_have_decl_sysctl=no
fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
fi
-echo "$as_me:$LINENO: result: $ac_cv_have_decl_sysctl" >&5
-echo "${ECHO_T}$ac_cv_have_decl_sysctl" >&6
-if test $ac_cv_have_decl_sysctl = yes; then
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_have_decl_sysctl" >&5
+$as_echo "$ac_cv_have_decl_sysctl" >&6; }
+if test "x$ac_cv_have_decl_sysctl" = x""yes; then
cat >>confdefs.h <<_ACEOF
#define HAVE_DECL_SYSCTL 1
@@ -7753,10 +8749,10 @@ _ACEOF
fi
-echo "$as_me:$LINENO: checking whether CTL_HW is declared" >&5
-echo $ECHO_N "checking whether CTL_HW is declared... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking whether CTL_HW is declared" >&5
+$as_echo_n "checking whether CTL_HW is declared... " >&6; }
if test "${ac_cv_have_decl_CTL_HW+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
@@ -7770,7 +8766,7 @@ int
main ()
{
#ifndef CTL_HW
- char *p = (char *) CTL_HW;
+ (void) CTL_HW;
#endif
;
@@ -7778,39 +8774,36 @@ main ()
}
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
ac_cv_have_decl_CTL_HW=yes
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-ac_cv_have_decl_CTL_HW=no
+ ac_cv_have_decl_CTL_HW=no
fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
fi
-echo "$as_me:$LINENO: result: $ac_cv_have_decl_CTL_HW" >&5
-echo "${ECHO_T}$ac_cv_have_decl_CTL_HW" >&6
-if test $ac_cv_have_decl_CTL_HW = yes; then
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_have_decl_CTL_HW" >&5
+$as_echo "$ac_cv_have_decl_CTL_HW" >&6; }
+if test "x$ac_cv_have_decl_CTL_HW" = x""yes; then
cat >>confdefs.h <<_ACEOF
#define HAVE_DECL_CTL_HW 1
@@ -7824,10 +8817,10 @@ _ACEOF
fi
-echo "$as_me:$LINENO: checking whether HW_PHYSMEM is declared" >&5
-echo $ECHO_N "checking whether HW_PHYSMEM is declared... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking whether HW_PHYSMEM is declared" >&5
+$as_echo_n "checking whether HW_PHYSMEM is declared... " >&6; }
if test "${ac_cv_have_decl_HW_PHYSMEM+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
@@ -7841,7 +8834,7 @@ int
main ()
{
#ifndef HW_PHYSMEM
- char *p = (char *) HW_PHYSMEM;
+ (void) HW_PHYSMEM;
#endif
;
@@ -7849,39 +8842,36 @@ main ()
}
_ACEOF
rm -f conftest.$ac_objext
-if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
- (eval $ac_compile) 2>conftest.er1
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
ac_status=$?
grep -v '^ *+' conftest.er1 >conftest.err
rm -f conftest.er1
cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag"
- || test ! -s conftest.err'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest.$ac_objext'
- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
- (eval $ac_try) 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
ac_cv_have_decl_HW_PHYSMEM=yes
else
- echo "$as_me: failed program was:" >&5
+ $as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-ac_cv_have_decl_HW_PHYSMEM=no
+ ac_cv_have_decl_HW_PHYSMEM=no
fi
-rm -f conftest.err conftest.$ac_objext conftest.$ac_ext
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
fi
-echo "$as_me:$LINENO: result: $ac_cv_have_decl_HW_PHYSMEM" >&5
-echo "${ECHO_T}$ac_cv_have_decl_HW_PHYSMEM" >&6
-if test $ac_cv_have_decl_HW_PHYSMEM = yes; then
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_have_decl_HW_PHYSMEM" >&5
+$as_echo "$ac_cv_have_decl_HW_PHYSMEM" >&6; }
+if test "x$ac_cv_have_decl_HW_PHYSMEM" = x""yes; then
cat >>confdefs.h <<_ACEOF
#define HAVE_DECL_HW_PHYSMEM 1
@@ -7901,8 +8891,8 @@ fi
# test to see if srcdir already configured
if test "`cd $srcdir && pwd`" != "`pwd`" &&
test -f $srcdir/config.status; then
- { { echo "$as_me:$LINENO: error: source directory already configured; run \"make distclean\" there first" >&5
-echo "$as_me: error: source directory already configured; run \"make distclean\" there first" >&2;}
+ { { $as_echo "$as_me:$LINENO: error: source directory already configured; run \"make distclean\" there first" >&5
+$as_echo "$as_me: error: source directory already configured; run \"make distclean\" there first" >&2;}
{ (exit 1); exit 1; }; }
fi
@@ -7918,7 +8908,7 @@ fi
# Define the identity of the package.
PACKAGE='cufflinks'
- VERSION='2.2.0'
+ VERSION='2.2.1'
cat >>confdefs.h <<_ACEOF
@@ -7956,10 +8946,10 @@ if test "$cross_compiling" != no; then
if test -n "$ac_tool_prefix"; then
# Extract the first word of "${ac_tool_prefix}strip", so it can be a program name with args.
set dummy ${ac_tool_prefix}strip; ac_word=$2
-echo "$as_me:$LINENO: checking for $ac_word" >&5
-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
if test "${ac_cv_prog_STRIP+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
if test -n "$STRIP"; then
ac_cv_prog_STRIP="$STRIP" # Let the user override the test.
@@ -7970,34 +8960,36 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_STRIP="${ac_tool_prefix}strip"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
fi
done
done
+IFS=$as_save_IFS
fi
fi
STRIP=$ac_cv_prog_STRIP
if test -n "$STRIP"; then
- echo "$as_me:$LINENO: result: $STRIP" >&5
-echo "${ECHO_T}$STRIP" >&6
+ { $as_echo "$as_me:$LINENO: result: $STRIP" >&5
+$as_echo "$STRIP" >&6; }
else
- echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
fi
+
fi
if test -z "$ac_cv_prog_STRIP"; then
ac_ct_STRIP=$STRIP
# Extract the first word of "strip", so it can be a program name with args.
set dummy strip; ac_word=$2
-echo "$as_me:$LINENO: checking for $ac_word" >&5
-echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
if test "${ac_cv_prog_ac_ct_STRIP+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
if test -n "$ac_ct_STRIP"; then
ac_cv_prog_ac_ct_STRIP="$ac_ct_STRIP" # Let the user override the test.
@@ -8008,27 +9000,37 @@ do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
for ac_exec_ext in '' $ac_executable_extensions; do
- if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
ac_cv_prog_ac_ct_STRIP="strip"
- echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
fi
done
done
+IFS=$as_save_IFS
- test -z "$ac_cv_prog_ac_ct_STRIP" && ac_cv_prog_ac_ct_STRIP=":"
fi
fi
ac_ct_STRIP=$ac_cv_prog_ac_ct_STRIP
if test -n "$ac_ct_STRIP"; then
- echo "$as_me:$LINENO: result: $ac_ct_STRIP" >&5
-echo "${ECHO_T}$ac_ct_STRIP" >&6
+ { $as_echo "$as_me:$LINENO: result: $ac_ct_STRIP" >&5
+$as_echo "$ac_ct_STRIP" >&6; }
else
- echo "$as_me:$LINENO: result: no" >&5
-echo "${ECHO_T}no" >&6
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
fi
- STRIP=$ac_ct_STRIP
+ if test "x$ac_ct_STRIP" = x; then
+ STRIP=":"
+ else
+ case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+ STRIP=$ac_ct_STRIP
+ fi
else
STRIP="$ac_cv_prog_STRIP"
fi
@@ -8043,8 +9045,8 @@ INSTALL_STRIP_PROGRAM="\${SHELL} \$(install_sh) -c -s"
AMTAR=${AMTAR-"${am_missing_run}tar"}
-echo "$as_me:$LINENO: checking how to create a pax tar archive" >&5
-echo $ECHO_N "checking how to create a pax tar archive... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking how to create a pax tar archive" >&5
+$as_echo_n "checking how to create a pax tar archive... " >&6; }
# Loop over all known methods to create a tar archive until one works.
_am_tools='gnutar pax cpio none'
_am_tools=${am_cv_prog_tar_pax-$_am_tools}
@@ -8117,23 +9119,23 @@ done
rm -rf conftest.dir
if test "${am_cv_prog_tar_pax+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
am_cv_prog_tar_pax=$_am_tool
fi
-echo "$as_me:$LINENO: result: $am_cv_prog_tar_pax" >&5
-echo "${ECHO_T}$am_cv_prog_tar_pax" >&6
+{ $as_echo "$as_me:$LINENO: result: $am_cv_prog_tar_pax" >&5
+$as_echo "$am_cv_prog_tar_pax" >&6; }
depcc="$CC" am_compiler_list=
-echo "$as_me:$LINENO: checking dependency style of $depcc" >&5
-echo $ECHO_N "checking dependency style of $depcc... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking dependency style of $depcc" >&5
+$as_echo_n "checking dependency style of $depcc... " >&6; }
if test "${am_cv_CC_dependencies_compiler_type+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
if test -z "$AMDEP_TRUE" && test -f "$am_depcomp"; then
# We make a subdir and do the tests there. Otherwise we can end up
@@ -8220,8 +9222,8 @@ else
fi
fi
-echo "$as_me:$LINENO: result: $am_cv_CC_dependencies_compiler_type" >&5
-echo "${ECHO_T}$am_cv_CC_dependencies_compiler_type" >&6
+{ $as_echo "$as_me:$LINENO: result: $am_cv_CC_dependencies_compiler_type" >&5
+$as_echo "$am_cv_CC_dependencies_compiler_type" >&6; }
CCDEPMODE=depmode=$am_cv_CC_dependencies_compiler_type
@@ -8239,10 +9241,10 @@ fi
depcc="$CXX" am_compiler_list=
-echo "$as_me:$LINENO: checking dependency style of $depcc" >&5
-echo $ECHO_N "checking dependency style of $depcc... $ECHO_C" >&6
+{ $as_echo "$as_me:$LINENO: checking dependency style of $depcc" >&5
+$as_echo_n "checking dependency style of $depcc... " >&6; }
if test "${am_cv_CXX_dependencies_compiler_type+set}" = set; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
+ $as_echo_n "(cached) " >&6
else
if test -z "$AMDEP_TRUE" && test -f "$am_depcomp"; then
# We make a subdir and do the tests there. Otherwise we can end up
@@ -8329,8 +9331,8 @@ else
fi
fi
-echo "$as_me:$LINENO: result: $am_cv_CXX_dependencies_compiler_type" >&5
-echo "${ECHO_T}$am_cv_CXX_dependencies_compiler_type" >&6
+{ $as_echo "$as_me:$LINENO: result: $am_cv_CXX_dependencies_compiler_type" >&5
+$as_echo "$am_cv_CXX_dependencies_compiler_type" >&6; }
CXXDEPMODE=depmode=$am_cv_CXX_dependencies_compiler_type
@@ -8348,7 +9350,7 @@ fi
- ac_config_files="$ac_config_files Makefile src/Makefile"
+ac_config_files="$ac_config_files Makefile src/Makefile"
cat >confcache <<\_ACEOF
@@ -8369,39 +9371,59 @@ _ACEOF
# The following way of writing the cache mishandles newlines in values,
# but we know of no workaround that is simple, portable, and efficient.
-# So, don't put newlines in cache variables' values.
+# So, we kill variables containing newlines.
# Ultrix sh set writes to stderr and can't be redirected directly,
# and sets the high bit in the cache file unless we assign to the vars.
-{
+(
+ for ac_var in `(set) 2>&1 | sed -n 's/^\([a-zA-Z_][a-zA-Z0-9_]*\)=.*/\1/p'`; do
+ eval ac_val=\$$ac_var
+ case $ac_val in #(
+ *${as_nl}*)
+ case $ac_var in #(
+ *_cv_*) { $as_echo "$as_me:$LINENO: WARNING: cache variable $ac_var contains a newline" >&5
+$as_echo "$as_me: WARNING: cache variable $ac_var contains a newline" >&2;} ;;
+ esac
+ case $ac_var in #(
+ _ | IFS | as_nl) ;; #(
+ BASH_ARGV | BASH_SOURCE) eval $ac_var= ;; #(
+ *) $as_unset $ac_var ;;
+ esac ;;
+ esac
+ done
+
(set) 2>&1 |
- case `(ac_space=' '; set | grep ac_space) 2>&1` in
- *ac_space=\ *)
+ case $as_nl`(ac_space=' '; set) 2>&1` in #(
+ *${as_nl}ac_space=\ *)
# `set' does not quote correctly, so add quotes (double-quote
# substitution turns \\\\ into \\, and sed turns \\ into \).
sed -n \
"s/'/'\\\\''/g;
s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\\2'/p"
- ;;
+ ;; #(
*)
# `set' quotes correctly as required by POSIX, so do not add quotes.
- sed -n \
- "s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1=\\2/p"
+ sed -n "/^[_$as_cr_alnum]*_cv_[_$as_cr_alnum]*=/p"
;;
- esac;
-} |
+ esac |
+ sort
+) |
sed '
+ /^ac_cv_env_/b end
t clear
- : clear
+ :clear
s/^\([^=]*\)=\(.*[{}].*\)$/test "${\1+set}" = set || &/
t end
- /^ac_cv_env/!s/^\([^=]*\)=\(.*\)$/\1=${\1=\2}/
- : end' >>confcache
-if diff $cache_file confcache >/dev/null 2>&1; then :; else
- if test -w $cache_file; then
- test "x$cache_file" != "x/dev/null" && echo "updating cache $cache_file"
+ s/^\([^=]*\)=\(.*\)$/\1=${\1=\2}/
+ :end' >>confcache
+if diff "$cache_file" confcache >/dev/null 2>&1; then :; else
+ if test -w "$cache_file"; then
+ test "x$cache_file" != "x/dev/null" &&
+ { $as_echo "$as_me:$LINENO: updating cache $cache_file" >&5
+$as_echo "$as_me: updating cache $cache_file" >&6;}
cat confcache >$cache_file
else
- echo "not updating unwritable cache $cache_file"
+ { $as_echo "$as_me:$LINENO: not updating unwritable cache $cache_file" >&5
+$as_echo "$as_me: not updating unwritable cache $cache_file" >&6;}
fi
fi
rm -f confcache
@@ -8410,32 +9432,18 @@ test "x$prefix" = xNONE && prefix=$ac_default_prefix
# Let make expand exec_prefix.
test "x$exec_prefix" = xNONE && exec_prefix='${prefix}'
-# VPATH may cause trouble with some makes, so we remove $(srcdir),
-# ${srcdir} and @srcdir@ from VPATH if srcdir is ".", strip leading and
-# trailing colons and then remove the whole line if VPATH becomes empty
-# (actually we leave an empty line to preserve line numbers).
-if test "x$srcdir" = x.; then
- ac_vpsub='/^[ ]*VPATH[ ]*=/{
-s/:*\$(srcdir):*/:/;
-s/:*\${srcdir}:*/:/;
-s/:*@srcdir@:*/:/;
-s/^\([^=]*=[ ]*\):*/\1/;
-s/:*$//;
-s/^[^=]*=[ ]*$//;
-}'
-fi
-
DEFS=-DHAVE_CONFIG_H
ac_libobjs=
ac_ltlibobjs=
for ac_i in : $LIBOBJS; do test "x$ac_i" = x: && continue
# 1. Remove the extension, and $U if already installed.
- ac_i=`echo "$ac_i" |
- sed 's/\$U\././;s/\.o$//;s/\.obj$//'`
- # 2. Add them.
- ac_libobjs="$ac_libobjs $ac_i\$U.$ac_objext"
- ac_ltlibobjs="$ac_ltlibobjs $ac_i"'$U.lo'
+ ac_script='s/\$U\././;s/\.o$//;s/\.obj$//'
+ ac_i=`$as_echo "$ac_i" | sed "$ac_script"`
+ # 2. Prepend LIBOBJDIR. When used with automake>=1.10 LIBOBJDIR
+ # will be set to the directory where LIBOBJS objects are built.
+ ac_libobjs="$ac_libobjs \${LIBOBJDIR}$ac_i\$U.$ac_objext"
+ ac_ltlibobjs="$ac_ltlibobjs \${LIBOBJDIR}$ac_i"'$U.lo'
done
LIBOBJS=$ac_libobjs
@@ -8443,47 +9451,48 @@ LTLIBOBJS=$ac_ltlibobjs
if test -z "${AMDEP_TRUE}" && test -z "${AMDEP_FALSE}"; then
- { { echo "$as_me:$LINENO: error: conditional \"AMDEP\" was never defined.
+ { { $as_echo "$as_me:$LINENO: error: conditional \"AMDEP\" was never defined.
Usually this means the macro was only invoked conditionally." >&5
-echo "$as_me: error: conditional \"AMDEP\" was never defined.
+$as_echo "$as_me: error: conditional \"AMDEP\" was never defined.
Usually this means the macro was only invoked conditionally." >&2;}
{ (exit 1); exit 1; }; }
fi
if test -z "${am__fastdepCXX_TRUE}" && test -z "${am__fastdepCXX_FALSE}"; then
- { { echo "$as_me:$LINENO: error: conditional \"am__fastdepCXX\" was never defined.
+ { { $as_echo "$as_me:$LINENO: error: conditional \"am__fastdepCXX\" was never defined.
Usually this means the macro was only invoked conditionally." >&5
-echo "$as_me: error: conditional \"am__fastdepCXX\" was never defined.
+$as_echo "$as_me: error: conditional \"am__fastdepCXX\" was never defined.
Usually this means the macro was only invoked conditionally." >&2;}
{ (exit 1); exit 1; }; }
fi
if test -z "${am__fastdepCC_TRUE}" && test -z "${am__fastdepCC_FALSE}"; then
- { { echo "$as_me:$LINENO: error: conditional \"am__fastdepCC\" was never defined.
+ { { $as_echo "$as_me:$LINENO: error: conditional \"am__fastdepCC\" was never defined.
Usually this means the macro was only invoked conditionally." >&5
-echo "$as_me: error: conditional \"am__fastdepCC\" was never defined.
+$as_echo "$as_me: error: conditional \"am__fastdepCC\" was never defined.
Usually this means the macro was only invoked conditionally." >&2;}
{ (exit 1); exit 1; }; }
fi
if test -z "${am__fastdepCC_TRUE}" && test -z "${am__fastdepCC_FALSE}"; then
- { { echo "$as_me:$LINENO: error: conditional \"am__fastdepCC\" was never defined.
+ { { $as_echo "$as_me:$LINENO: error: conditional \"am__fastdepCC\" was never defined.
Usually this means the macro was only invoked conditionally." >&5
-echo "$as_me: error: conditional \"am__fastdepCC\" was never defined.
+$as_echo "$as_me: error: conditional \"am__fastdepCC\" was never defined.
Usually this means the macro was only invoked conditionally." >&2;}
{ (exit 1); exit 1; }; }
fi
if test -z "${am__fastdepCXX_TRUE}" && test -z "${am__fastdepCXX_FALSE}"; then
- { { echo "$as_me:$LINENO: error: conditional \"am__fastdepCXX\" was never defined.
+ { { $as_echo "$as_me:$LINENO: error: conditional \"am__fastdepCXX\" was never defined.
Usually this means the macro was only invoked conditionally." >&5
-echo "$as_me: error: conditional \"am__fastdepCXX\" was never defined.
+$as_echo "$as_me: error: conditional \"am__fastdepCXX\" was never defined.
Usually this means the macro was only invoked conditionally." >&2;}
{ (exit 1); exit 1; }; }
fi
: ${CONFIG_STATUS=./config.status}
+ac_write_fail=0
ac_clean_files_save=$ac_clean_files
ac_clean_files="$ac_clean_files $CONFIG_STATUS"
-{ echo "$as_me:$LINENO: creating $CONFIG_STATUS" >&5
-echo "$as_me: creating $CONFIG_STATUS" >&6;}
-cat >$CONFIG_STATUS <<_ACEOF
+{ $as_echo "$as_me:$LINENO: creating $CONFIG_STATUS" >&5
+$as_echo "$as_me: creating $CONFIG_STATUS" >&6;}
+cat >$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
#! $SHELL
# Generated by $as_me.
# Run this file to recreate the current configuration.
@@ -8496,22 +9505,78 @@ ac_cs_silent=false
SHELL=\${CONFIG_SHELL-$SHELL}
_ACEOF
-cat >>$CONFIG_STATUS <<\_ACEOF
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
## --------------------- ##
## M4sh Initialization. ##
## --------------------- ##
-# Be Bourne compatible
+# Be more Bourne compatible
+DUALCASE=1; export DUALCASE # for MKS sh
if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
emulate sh
NULLCMD=:
- # Zsh 3.x and 4.x performs word splitting on ${1+"$@"}, which
+ # Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which
# is contrary to our usage. Disable this feature.
alias -g '${1+"$@"}'='"$@"'
-elif test -n "${BASH_VERSION+set}" && (set -o posix) >/dev/null 2>&1; then
- set -o posix
+ setopt NO_GLOB_SUBST
+else
+ case `(set -o) 2>/dev/null` in
+ *posix*) set -o posix ;;
+esac
+
+fi
+
+
+
+
+# PATH needs CR
+# Avoid depending upon Character Ranges.
+as_cr_letters='abcdefghijklmnopqrstuvwxyz'
+as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
+as_cr_Letters=$as_cr_letters$as_cr_LETTERS
+as_cr_digits='0123456789'
+as_cr_alnum=$as_cr_Letters$as_cr_digits
+
+as_nl='
+'
+export as_nl
+# Printing a long string crashes Solaris 7 /usr/bin/printf.
+as_echo='\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\'
+as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo
+as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo$as_echo
+if (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
+ as_echo='printf %s\n'
+ as_echo_n='printf %s'
+else
+ if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then
+ as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"'
+ as_echo_n='/usr/ucb/echo -n'
+ else
+ as_echo_body='eval expr "X$1" : "X\\(.*\\)"'
+ as_echo_n_body='eval
+ arg=$1;
+ case $arg in
+ *"$as_nl"*)
+ expr "X$arg" : "X\\(.*\\)$as_nl";
+ arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
+ esac;
+ expr "X$arg" : "X\\(.*\\)" | tr -d "$as_nl"
+ '
+ export as_echo_n_body
+ as_echo_n='sh -c $as_echo_n_body as_echo'
+ fi
+ export as_echo_body
+ as_echo='sh -c $as_echo_body as_echo'
+fi
+
+# The user is always right.
+if test "${PATH_SEPARATOR+set}" != set; then
+ PATH_SEPARATOR=:
+ (PATH='/bin;/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 && {
+ (PATH='/bin:/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 ||
+ PATH_SEPARATOR=';'
+ }
fi
-DUALCASE=1; export DUALCASE # for MKS sh
# Support unset when possible.
if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then
@@ -8521,33 +9586,60 @@ else
fi
+# IFS
+# We need space, tab and new line, in precisely that order. Quoting is
+# there to prevent editors from complaining about space-tab.
+# (If _AS_PATH_WALK were called with IFS unset, it would disable word
+# splitting by setting IFS to empty value.)
+IFS=" "" $as_nl"
+
+# Find who we are. Look in the path if we contain no directory separator.
+case $0 in
+ *[\\/]* ) as_myself=$0 ;;
+ *) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
+done
+IFS=$as_save_IFS
+
+ ;;
+esac
+# We did not find ourselves, most probably we were run as `sh COMMAND'
+# in which case we are not to be found in the path.
+if test "x$as_myself" = x; then
+ as_myself=$0
+fi
+if test ! -f "$as_myself"; then
+ $as_echo "$as_myself: error: cannot find myself; rerun with an absolute file name" >&2
+ { (exit 1); exit 1; }
+fi
+
# Work around bugs in pre-3.0 UWIN ksh.
-$as_unset ENV MAIL MAILPATH
+for as_var in ENV MAIL MAILPATH
+do ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
+done
PS1='$ '
PS2='> '
PS4='+ '
# NLS nuisances.
-for as_var in \
- LANG LANGUAGE LC_ADDRESS LC_ALL LC_COLLATE LC_CTYPE LC_IDENTIFICATION \
- LC_MEASUREMENT LC_MESSAGES LC_MONETARY LC_NAME LC_NUMERIC LC_PAPER \
- LC_TELEPHONE LC_TIME
-do
- if (set +x; test -z "`(eval $as_var=C; export $as_var) 2>&1`"); then
- eval $as_var=C; export $as_var
- else
- $as_unset $as_var
- fi
-done
+LC_ALL=C
+export LC_ALL
+LANGUAGE=C
+export LANGUAGE
# Required to use basename.
-if expr a : '\(a\)' >/dev/null 2>&1; then
+if expr a : '\(a\)' >/dev/null 2>&1 &&
+ test "X`expr 00001 : '.*\(...\)'`" = X001; then
as_expr=expr
else
as_expr=false
fi
-if (basename /) >/dev/null 2>&1 && test "X`basename / 2>&1`" = "X/"; then
+if (basename -- /) >/dev/null 2>&1 && test "X`basename -- / 2>&1`" = "X/"; then
as_basename=basename
else
as_basename=false
@@ -8555,159 +9647,122 @@ fi
# Name of the executable.
-as_me=`$as_basename "$0" ||
+as_me=`$as_basename -- "$0" ||
$as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \
X"$0" : 'X\(//\)$' \| \
- X"$0" : 'X\(/\)$' \| \
- . : '\(.\)' 2>/dev/null ||
-echo X/"$0" |
- sed '/^.*\/\([^/][^/]*\)\/*$/{ s//\1/; q; }
- /^X\/\(\/\/\)$/{ s//\1/; q; }
- /^X\/\(\/\).*/{ s//\1/; q; }
- s/.*/./; q'`
+ X"$0" : 'X\(/\)' \| . 2>/dev/null ||
+$as_echo X/"$0" |
+ sed '/^.*\/\([^/][^/]*\)\/*$/{
+ s//\1/
+ q
+ }
+ /^X\/\(\/\/\)$/{
+ s//\1/
+ q
+ }
+ /^X\/\(\/\).*/{
+ s//\1/
+ q
+ }
+ s/.*/./; q'`
+# CDPATH.
+$as_unset CDPATH
-# PATH needs CR, and LINENO needs CR and PATH.
-# Avoid depending upon Character Ranges.
-as_cr_letters='abcdefghijklmnopqrstuvwxyz'
-as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
-as_cr_Letters=$as_cr_letters$as_cr_LETTERS
-as_cr_digits='0123456789'
-as_cr_alnum=$as_cr_Letters$as_cr_digits
-
-# The user is always right.
-if test "${PATH_SEPARATOR+set}" != set; then
- echo "#! /bin/sh" >conf$$.sh
- echo "exit 0" >>conf$$.sh
- chmod +x conf$$.sh
- if (PATH="/nonexistent;."; conf$$.sh) >/dev/null 2>&1; then
- PATH_SEPARATOR=';'
- else
- PATH_SEPARATOR=:
- fi
- rm -f conf$$.sh
-fi
as_lineno_1=$LINENO
as_lineno_2=$LINENO
- as_lineno_3=`(expr $as_lineno_1 + 1) 2>/dev/null`
test "x$as_lineno_1" != "x$as_lineno_2" &&
- test "x$as_lineno_3" = "x$as_lineno_2" || {
- # Find who we are. Look in the path if we contain no path at all
- # relative or not.
- case $0 in
- *[\\/]* ) as_myself=$0 ;;
- *) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-for as_dir in $PATH
-do
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
-done
+ test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2" || {
- ;;
- esac
- # We did not find ourselves, most probably we were run as `sh COMMAND'
- # in which case we are not to be found in the path.
- if test "x$as_myself" = x; then
- as_myself=$0
- fi
- if test ! -f "$as_myself"; then
- { { echo "$as_me:$LINENO: error: cannot find myself; rerun with an absolute path" >&5
-echo "$as_me: error: cannot find myself; rerun with an absolute path" >&2;}
- { (exit 1); exit 1; }; }
- fi
- case $CONFIG_SHELL in
- '')
- as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-for as_dir in /bin$PATH_SEPARATOR/usr/bin$PATH_SEPARATOR$PATH
-do
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for as_base in sh bash ksh sh5; do
- case $as_dir in
- /*)
- if ("$as_dir/$as_base" -c '
- as_lineno_1=$LINENO
- as_lineno_2=$LINENO
- as_lineno_3=`(expr $as_lineno_1 + 1) 2>/dev/null`
- test "x$as_lineno_1" != "x$as_lineno_2" &&
- test "x$as_lineno_3" = "x$as_lineno_2" ') 2>/dev/null; then
- $as_unset BASH_ENV || test "${BASH_ENV+set}" != set || { BASH_ENV=; export BASH_ENV; }
- $as_unset ENV || test "${ENV+set}" != set || { ENV=; export ENV; }
- CONFIG_SHELL=$as_dir/$as_base
- export CONFIG_SHELL
- exec "$CONFIG_SHELL" "$0" ${1+"$@"}
- fi;;
- esac
- done
-done
-;;
- esac
-
- # Create $as_me.lineno as a copy of $as_myself, but with $LINENO
- # uniformly replaced by the line number. The first 'sed' inserts a
- # line-number line before each line; the second 'sed' does the real
- # work. The second script uses 'N' to pair each line-number line
- # with the numbered line, and appends trailing '-' during
- # substitution so that $LINENO is not a special case at line end.
- # (Raja R Harinath suggested sed '=', and Paul Eggert wrote the
- # second 'sed' script. Blame Lee E. McMahon for sed's syntax. :-)
- sed '=' <$as_myself |
- sed '
- N
- s,$,-,
- : loop
- s,^\(['$as_cr_digits']*\)\(.*\)[$]LINENO\([^'$as_cr_alnum'_]\),\1\2\1\3,
- t loop
- s,-$,,
- s,^['$as_cr_digits']*\n,,
- ' >$as_me.lineno &&
- chmod +x $as_me.lineno ||
- { { echo "$as_me:$LINENO: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&5
-echo "$as_me: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&2;}
+ # Create $as_me.lineno as a copy of $as_myself, but with $LINENO
+ # uniformly replaced by the line number. The first 'sed' inserts a
+ # line-number line after each line using $LINENO; the second 'sed'
+ # does the real work. The second script uses 'N' to pair each
+ # line-number line with the line containing $LINENO, and appends
+ # trailing '-' during substitution so that $LINENO is not a special
+ # case at line end.
+ # (Raja R Harinath suggested sed '=', and Paul Eggert wrote the
+ # scripts with optimization help from Paolo Bonzini. Blame Lee
+ # E. McMahon (1931-1989) for sed's syntax. :-)
+ sed -n '
+ p
+ /[$]LINENO/=
+ ' <$as_myself |
+ sed '
+ s/[$]LINENO.*/&-/
+ t lineno
+ b
+ :lineno
+ N
+ :loop
+ s/[$]LINENO\([^'$as_cr_alnum'_].*\n\)\(.*\)/\2\1\2/
+ t loop
+ s/-\n.*//
+ ' >$as_me.lineno &&
+ chmod +x "$as_me.lineno" ||
+ { $as_echo "$as_me: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&2
{ (exit 1); exit 1; }; }
# Don't try to exec as it changes $[0], causing all sort of problems
# (the dirname of $[0] is not the place where we might find the
- # original and so on. Autoconf is especially sensible to this).
- . ./$as_me.lineno
+ # original and so on. Autoconf is especially sensitive to this).
+ . "./$as_me.lineno"
# Exit status is that of the last command.
exit
}
-case `echo "testing\c"; echo 1,2,3`,`echo -n testing; echo 1,2,3` in
- *c*,-n*) ECHO_N= ECHO_C='
-' ECHO_T=' ' ;;
- *c*,* ) ECHO_N=-n ECHO_C= ECHO_T= ;;
- *) ECHO_N= ECHO_C='\c' ECHO_T= ;;
-esac
+if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then
+ as_dirname=dirname
+else
+ as_dirname=false
+fi
-if expr a : '\(a\)' >/dev/null 2>&1; then
+ECHO_C= ECHO_N= ECHO_T=
+case `echo -n x` in
+-n*)
+ case `echo 'x\c'` in
+ *c*) ECHO_T=' ';; # ECHO_T is single tab character.
+ *) ECHO_C='\c';;
+ esac;;
+*)
+ ECHO_N='-n';;
+esac
+if expr a : '\(a\)' >/dev/null 2>&1 &&
+ test "X`expr 00001 : '.*\(...\)'`" = X001; then
as_expr=expr
else
as_expr=false
fi
rm -f conf$$ conf$$.exe conf$$.file
-echo >conf$$.file
-if ln -s conf$$.file conf$$ 2>/dev/null; then
- # We could just check for DJGPP; but this test a) works b) is more generic
- # and c) will remain valid once DJGPP supports symlinks (DJGPP 2.04).
- if test -f conf$$.exe; then
- # Don't use ln at all; we don't have any links
- as_ln_s='cp -p'
- else
+if test -d conf$$.dir; then
+ rm -f conf$$.dir/conf$$.file
+else
+ rm -f conf$$.dir
+ mkdir conf$$.dir 2>/dev/null
+fi
+if (echo >conf$$.file) 2>/dev/null; then
+ if ln -s conf$$.file conf$$ 2>/dev/null; then
as_ln_s='ln -s'
+ # ... but there are two gotchas:
+ # 1) On MSYS, both `ln -s file dir' and `ln file dir' fail.
+ # 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable.
+ # In both cases, we have to default to `cp -p'.
+ ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe ||
+ as_ln_s='cp -p'
+ elif ln conf$$.file conf$$ 2>/dev/null; then
+ as_ln_s=ln
+ else
+ as_ln_s='cp -p'
fi
-elif ln conf$$.file conf$$ 2>/dev/null; then
- as_ln_s=ln
else
as_ln_s='cp -p'
fi
-rm -f conf$$ conf$$.exe conf$$.file
+rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
+rmdir conf$$.dir 2>/dev/null
if mkdir -p . 2>/dev/null; then
as_mkdir_p=:
@@ -8716,7 +9771,28 @@ else
as_mkdir_p=false
fi
-as_executable_p="test -f"
+if test -x / >/dev/null 2>&1; then
+ as_test_x='test -x'
+else
+ if ls -dL / >/dev/null 2>&1; then
+ as_ls_L_option=L
+ else
+ as_ls_L_option=
+ fi
+ as_test_x='
+ eval sh -c '\''
+ if test -d "$1"; then
+ test -d "$1/.";
+ else
+ case $1 in
+ -*)set "./$1";;
+ esac;
+ case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in
+ ???[sx]*):;;*)false;;esac;fi
+ '\'' sh
+ '
+fi
+as_executable_p=$as_test_x
# Sed expression to map a string onto a valid CPP name.
as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
@@ -8725,31 +9801,14 @@ as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
as_tr_sh="eval sed 'y%*+%pp%;s%[^_$as_cr_alnum]%_%g'"
-# IFS
-# We need space, tab and new line, in precisely that order.
-as_nl='
-'
-IFS=" $as_nl"
-
-# CDPATH.
-$as_unset CDPATH
-
exec 6>&1
-# Open the log real soon, to keep \$[0] and so on meaningful, and to
+# Save the log message, to keep $[0] and so on meaningful, and to
# report actual input values of CONFIG_FILES etc. instead of their
-# values after options handling. Logging --version etc. is OK.
-exec 5>>config.log
-{
- echo
- sed 'h;s/./-/g;s/^.../## /;s/...$/ ##/;p;x;p;x' <<_ASBOX
-## Running $as_me. ##
-_ASBOX
-} >&5
-cat >&5 <<_CSEOF
-
-This file was extended by cufflinks $as_me 2.2.0, which was
-generated by GNU Autoconf 2.59. Invocation command line was
+# values after options handling.
+ac_log="
+This file was extended by cufflinks $as_me 2.2.1, which was
+generated by GNU Autoconf 2.63. Invocation command line was
CONFIG_FILES = $CONFIG_FILES
CONFIG_HEADERS = $CONFIG_HEADERS
@@ -8757,45 +9816,45 @@ generated by GNU Autoconf 2.59. Invocation command line was
CONFIG_COMMANDS = $CONFIG_COMMANDS
$ $0 $@
-_CSEOF
-echo "on `(hostname || uname -n) 2>/dev/null | sed 1q`" >&5
-echo >&5
+on `(hostname || uname -n) 2>/dev/null | sed 1q`
+"
+
_ACEOF
-# Files that config.status was made for.
-if test -n "$ac_config_files"; then
- echo "config_files=\"$ac_config_files\"" >>$CONFIG_STATUS
-fi
+case $ac_config_files in *"
+"*) set x $ac_config_files; shift; ac_config_files=$*;;
+esac
-if test -n "$ac_config_headers"; then
- echo "config_headers=\"$ac_config_headers\"" >>$CONFIG_STATUS
-fi
+case $ac_config_headers in *"
+"*) set x $ac_config_headers; shift; ac_config_headers=$*;;
+esac
-if test -n "$ac_config_links"; then
- echo "config_links=\"$ac_config_links\"" >>$CONFIG_STATUS
-fi
-if test -n "$ac_config_commands"; then
- echo "config_commands=\"$ac_config_commands\"" >>$CONFIG_STATUS
-fi
+cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
+# Files that config.status was made for.
+config_files="$ac_config_files"
+config_headers="$ac_config_headers"
+config_commands="$ac_config_commands"
-cat >>$CONFIG_STATUS <<\_ACEOF
+_ACEOF
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
ac_cs_usage="\
\`$as_me' instantiates files from templates according to the
current configuration.
-Usage: $0 [OPTIONS] [FILE]...
+Usage: $0 [OPTION]... [FILE]...
-h, --help print this help, then exit
- -V, --version print version number, then exit
- -q, --quiet do not print progress messages
+ -V, --version print version number and configuration settings, then exit
+ -q, --quiet, --silent
+ do not print progress messages
-d, --debug don't remove temporary files
--recheck update $as_me by reconfiguring in the same conditions
- --file=FILE[:TEMPLATE]
- instantiate the configuration file FILE
- --header=FILE[:TEMPLATE]
- instantiate the configuration header FILE
+ --file=FILE[:TEMPLATE]
+ instantiate the configuration file FILE
+ --header=FILE[:TEMPLATE]
+ instantiate the configuration header FILE
Configuration files:
$config_files
@@ -8807,83 +9866,83 @@ Configuration commands:
$config_commands
Report bugs to <bug-autoconf at gnu.org>."
-_ACEOF
-cat >>$CONFIG_STATUS <<_ACEOF
+_ACEOF
+cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
ac_cs_version="\\
-cufflinks config.status 2.2.0
-configured by $0, generated by GNU Autoconf 2.59,
- with options \\"`echo "$ac_configure_args" | sed 's/[\\""\`\$]/\\\\&/g'`\\"
+cufflinks config.status 2.2.1
+configured by $0, generated by GNU Autoconf 2.63,
+ with options \\"`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`\\"
-Copyright (C) 2003 Free Software Foundation, Inc.
+Copyright (C) 2008 Free Software Foundation, Inc.
This config.status script is free software; the Free Software Foundation
gives unlimited permission to copy, distribute and modify it."
-srcdir=$srcdir
-INSTALL="$INSTALL"
+
+ac_pwd='$ac_pwd'
+srcdir='$srcdir'
+INSTALL='$INSTALL'
+AWK='$AWK'
+test -n "\$AWK" || AWK=awk
_ACEOF
-cat >>$CONFIG_STATUS <<\_ACEOF
-# If no file are specified by the user, then we need to provide default
-# value. By we need to know if files were specified by the user.
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
+# The default lists apply if the user does not specify any file.
ac_need_defaults=:
while test $# != 0
do
case $1 in
--*=*)
- ac_option=`expr "x$1" : 'x\([^=]*\)='`
- ac_optarg=`expr "x$1" : 'x[^=]*=\(.*\)'`
+ ac_option=`expr "X$1" : 'X\([^=]*\)='`
+ ac_optarg=`expr "X$1" : 'X[^=]*=\(.*\)'`
ac_shift=:
;;
- -*)
+ *)
ac_option=$1
ac_optarg=$2
ac_shift=shift
;;
- *) # This is not an option, so the user has probably given explicit
- # arguments.
- ac_option=$1
- ac_need_defaults=false;;
esac
case $ac_option in
# Handling of the options.
-_ACEOF
-cat >>$CONFIG_STATUS <<\_ACEOF
-recheck | --recheck | --rechec | --reche | --rech | --rec | --re | --r)
ac_cs_recheck=: ;;
- --version | --vers* | -V )
- echo "$ac_cs_version"; exit 0 ;;
- --he | --h)
- # Conflict between --help and --header
- { { echo "$as_me:$LINENO: error: ambiguous option: $1
-Try \`$0 --help' for more information." >&5
-echo "$as_me: error: ambiguous option: $1
-Try \`$0 --help' for more information." >&2;}
- { (exit 1); exit 1; }; };;
- --help | --hel | -h )
- echo "$ac_cs_usage"; exit 0 ;;
- --debug | --d* | -d )
+ --version | --versio | --versi | --vers | --ver | --ve | --v | -V )
+ $as_echo "$ac_cs_version"; exit ;;
+ --debug | --debu | --deb | --de | --d | -d )
debug=: ;;
--file | --fil | --fi | --f )
$ac_shift
- CONFIG_FILES="$CONFIG_FILES $ac_optarg"
+ case $ac_optarg in
+ *\'*) ac_optarg=`$as_echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"` ;;
+ esac
+ CONFIG_FILES="$CONFIG_FILES '$ac_optarg'"
ac_need_defaults=false;;
--header | --heade | --head | --hea )
$ac_shift
- CONFIG_HEADERS="$CONFIG_HEADERS $ac_optarg"
+ case $ac_optarg in
+ *\'*) ac_optarg=`$as_echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"` ;;
+ esac
+ CONFIG_HEADERS="$CONFIG_HEADERS '$ac_optarg'"
ac_need_defaults=false;;
+ --he | --h)
+ # Conflict between --help and --header
+ { $as_echo "$as_me: error: ambiguous option: $1
+Try \`$0 --help' for more information." >&2
+ { (exit 1); exit 1; }; };;
+ --help | --hel | -h )
+ $as_echo "$ac_cs_usage"; exit ;;
-q | -quiet | --quiet | --quie | --qui | --qu | --q \
| -silent | --silent | --silen | --sile | --sil | --si | --s)
ac_cs_silent=: ;;
# This is an error.
- -*) { { echo "$as_me:$LINENO: error: unrecognized option: $1
-Try \`$0 --help' for more information." >&5
-echo "$as_me: error: unrecognized option: $1
-Try \`$0 --help' for more information." >&2;}
+ -*) { $as_echo "$as_me: error: unrecognized option: $1
+Try \`$0 --help' for more information." >&2
{ (exit 1); exit 1; }; } ;;
- *) ac_config_targets="$ac_config_targets $1" ;;
+ *) ac_config_targets="$ac_config_targets $1"
+ ac_need_defaults=false ;;
esac
shift
@@ -8897,40 +9956,54 @@ if $ac_cs_silent; then
fi
_ACEOF
-cat >>$CONFIG_STATUS <<_ACEOF
+cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
if \$ac_cs_recheck; then
- echo "running $SHELL $0 " $ac_configure_args \$ac_configure_extra_args " --no-create --no-recursion" >&6
- exec $SHELL $0 $ac_configure_args \$ac_configure_extra_args --no-create --no-recursion
+ set X '$SHELL' '$0' $ac_configure_args \$ac_configure_extra_args --no-create --no-recursion
+ shift
+ \$as_echo "running CONFIG_SHELL=$SHELL \$*" >&6
+ CONFIG_SHELL='$SHELL'
+ export CONFIG_SHELL
+ exec "\$@"
fi
_ACEOF
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
+exec 5>>config.log
+{
+ echo
+ sed 'h;s/./-/g;s/^.../## /;s/...$/ ##/;p;x;p;x' <<_ASBOX
+## Running $as_me. ##
+_ASBOX
+ $as_echo "$ac_log"
+} >&5
-cat >>$CONFIG_STATUS <<_ACEOF
+_ACEOF
+cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
#
-# INIT-COMMANDS section.
+# INIT-COMMANDS
#
-
AMDEP_TRUE="$AMDEP_TRUE" ac_aux_dir="$ac_aux_dir"
_ACEOF
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
-
-cat >>$CONFIG_STATUS <<\_ACEOF
+# Handling of arguments.
for ac_config_target in $ac_config_targets
do
- case "$ac_config_target" in
- # Handling of arguments.
- "Makefile" ) CONFIG_FILES="$CONFIG_FILES Makefile" ;;
- "src/Makefile" ) CONFIG_FILES="$CONFIG_FILES src/Makefile" ;;
- "depfiles" ) CONFIG_COMMANDS="$CONFIG_COMMANDS depfiles" ;;
- "config.h" ) CONFIG_HEADERS="$CONFIG_HEADERS config.h" ;;
- *) { { echo "$as_me:$LINENO: error: invalid argument: $ac_config_target" >&5
-echo "$as_me: error: invalid argument: $ac_config_target" >&2;}
+ case $ac_config_target in
+ "config.h") CONFIG_HEADERS="$CONFIG_HEADERS config.h" ;;
+ "depfiles") CONFIG_COMMANDS="$CONFIG_COMMANDS depfiles" ;;
+ "Makefile") CONFIG_FILES="$CONFIG_FILES Makefile" ;;
+ "src/Makefile") CONFIG_FILES="$CONFIG_FILES src/Makefile" ;;
+
+ *) { { $as_echo "$as_me:$LINENO: error: invalid argument: $ac_config_target" >&5
+$as_echo "$as_me: error: invalid argument: $ac_config_target" >&2;}
{ (exit 1); exit 1; }; };;
esac
done
+
# If the user did not use the arguments to specify the items to instantiate,
# then the envvar interface is used. Set only those that are not.
# We use the long form for the default assignment because of an extremely
@@ -8942,749 +10015,635 @@ if $ac_need_defaults; then
fi
# Have a temporary directory for convenience. Make it in the build tree
-# simply because there is no reason to put it here, and in addition,
+# simply because there is no reason against having it here, and in addition,
# creating and moving files from /tmp can sometimes cause problems.
-# Create a temporary directory, and hook for its removal unless debugging.
+# Hook for its removal unless debugging.
+# Note that there is a small window in which the directory will not be cleaned:
+# after its creation but before its name has been assigned to `$tmp'.
$debug ||
{
- trap 'exit_status=$?; rm -rf $tmp && exit $exit_status' 0
+ tmp=
+ trap 'exit_status=$?
+ { test -z "$tmp" || test ! -d "$tmp" || rm -fr "$tmp"; } && exit $exit_status
+' 0
trap '{ (exit 1); exit 1; }' 1 2 13 15
}
-
# Create a (secure) tmp directory for tmp files.
{
- tmp=`(umask 077 && mktemp -d -q "./confstatXXXXXX") 2>/dev/null` &&
+ tmp=`(umask 077 && mktemp -d "./confXXXXXX") 2>/dev/null` &&
test -n "$tmp" && test -d "$tmp"
} ||
{
- tmp=./confstat$$-$RANDOM
- (umask 077 && mkdir $tmp)
+ tmp=./conf$$-$RANDOM
+ (umask 077 && mkdir "$tmp")
} ||
{
- echo "$me: cannot create a temporary directory in ." >&2
+ $as_echo "$as_me: cannot create a temporary directory in ." >&2
{ (exit 1); exit 1; }
}
+# Set up the scripts for CONFIG_FILES section.
+# No need to generate them if there are no CONFIG_FILES.
+# This happens for instance with `./config.status config.h'.
+if test -n "$CONFIG_FILES"; then
+
+
+ac_cr='
'
+ac_cs_awk_cr=`$AWK 'BEGIN { print "a\rb" }' </dev/null 2>/dev/null`
+if test "$ac_cs_awk_cr" = "a${ac_cr}b"; then
+ ac_cs_awk_cr='\\r'
+else
+ ac_cs_awk_cr=$ac_cr
+fi
+
+echo 'BEGIN {' >"$tmp/subs1.awk" &&
_ACEOF
-cat >>$CONFIG_STATUS <<_ACEOF
-#
-# CONFIG_FILES section.
-#
+{
+ echo "cat >conf$$subs.awk <<_ACEOF" &&
+ echo "$ac_subst_vars" | sed 's/.*/&!$&$ac_delim/' &&
+ echo "_ACEOF"
+} >conf$$subs.sh ||
+ { { $as_echo "$as_me:$LINENO: error: could not make $CONFIG_STATUS" >&5
+$as_echo "$as_me: error: could not make $CONFIG_STATUS" >&2;}
+ { (exit 1); exit 1; }; }
+ac_delim_num=`echo "$ac_subst_vars" | grep -c '$'`
+ac_delim='%!_!# '
+for ac_last_try in false false false false false :; do
+ . ./conf$$subs.sh ||
+ { { $as_echo "$as_me:$LINENO: error: could not make $CONFIG_STATUS" >&5
+$as_echo "$as_me: error: could not make $CONFIG_STATUS" >&2;}
+ { (exit 1); exit 1; }; }
-# No need to generate the scripts if there are no CONFIG_FILES.
-# This happens for instance when ./config.status config.h
-if test -n "\$CONFIG_FILES"; then
- # Protect against being on the right side of a sed subst in config.status.
- sed 's/,@/@@/; s/@,/@@/; s/,;t t\$/@;t t/; /@;t t\$/s/[\\\\&,]/\\\\&/g;
- s/@@/,@/; s/@@/@,/; s/@;t t\$/,;t t/' >\$tmp/subs.sed <<\\CEOF
-s, at SHELL@,$SHELL,;t t
-s, at PATH_SEPARATOR@,$PATH_SEPARATOR,;t t
-s, at PACKAGE_NAME@,$PACKAGE_NAME,;t t
-s, at PACKAGE_TARNAME@,$PACKAGE_TARNAME,;t t
-s, at PACKAGE_VERSION@,$PACKAGE_VERSION,;t t
-s, at PACKAGE_STRING@,$PACKAGE_STRING,;t t
-s, at PACKAGE_BUGREPORT@,$PACKAGE_BUGREPORT,;t t
-s, at exec_prefix@,$exec_prefix,;t t
-s, at prefix@,$prefix,;t t
-s, at program_transform_name@,$program_transform_name,;t t
-s, at bindir@,$bindir,;t t
-s, at sbindir@,$sbindir,;t t
-s, at libexecdir@,$libexecdir,;t t
-s, at datadir@,$datadir,;t t
-s, at sysconfdir@,$sysconfdir,;t t
-s, at sharedstatedir@,$sharedstatedir,;t t
-s, at localstatedir@,$localstatedir,;t t
-s, at libdir@,$libdir,;t t
-s, at includedir@,$includedir,;t t
-s, at oldincludedir@,$oldincludedir,;t t
-s, at infodir@,$infodir,;t t
-s, at mandir@,$mandir,;t t
-s, at build_alias@,$build_alias,;t t
-s, at host_alias@,$host_alias,;t t
-s, at target_alias@,$target_alias,;t t
-s, at DEFS@,$DEFS,;t t
-s, at ECHO_C@,$ECHO_C,;t t
-s, at ECHO_N@,$ECHO_N,;t t
-s, at ECHO_T@,$ECHO_T,;t t
-s, at LIBS@,$LIBS,;t t
-s, at INSTALL_PROGRAM@,$INSTALL_PROGRAM,;t t
-s, at INSTALL_SCRIPT@,$INSTALL_SCRIPT,;t t
-s, at INSTALL_DATA@,$INSTALL_DATA,;t t
-s, at CYGPATH_W@,$CYGPATH_W,;t t
-s, at PACKAGE@,$PACKAGE,;t t
-s, at VERSION@,$VERSION,;t t
-s, at ACLOCAL@,$ACLOCAL,;t t
-s, at AUTOCONF@,$AUTOCONF,;t t
-s, at AUTOMAKE@,$AUTOMAKE,;t t
-s, at AUTOHEADER@,$AUTOHEADER,;t t
-s, at MAKEINFO@,$MAKEINFO,;t t
-s, at install_sh@,$install_sh,;t t
-s, at STRIP@,$STRIP,;t t
-s, at ac_ct_STRIP@,$ac_ct_STRIP,;t t
-s, at INSTALL_STRIP_PROGRAM@,$INSTALL_STRIP_PROGRAM,;t t
-s, at mkdir_p@,$mkdir_p,;t t
-s, at AWK@,$AWK,;t t
-s, at SET_MAKE@,$SET_MAKE,;t t
-s, at am__leading_dot@,$am__leading_dot,;t t
-s, at AMTAR@,$AMTAR,;t t
-s, at am__tar@,$am__tar,;t t
-s, at am__untar@,$am__untar,;t t
-s, at PYTHON@,$PYTHON,;t t
-s, at CXX@,$CXX,;t t
-s, at CXXFLAGS@,$CXXFLAGS,;t t
-s, at LDFLAGS@,$LDFLAGS,;t t
-s, at CPPFLAGS@,$CPPFLAGS,;t t
-s, at ac_ct_CXX@,$ac_ct_CXX,;t t
-s, at EXEEXT@,$EXEEXT,;t t
-s, at OBJEXT@,$OBJEXT,;t t
-s, at DEPDIR@,$DEPDIR,;t t
-s, at am__include@,$am__include,;t t
-s, at am__quote@,$am__quote,;t t
-s, at AMDEP_TRUE@,$AMDEP_TRUE,;t t
-s, at AMDEP_FALSE@,$AMDEP_FALSE,;t t
-s, at AMDEPBACKSLASH@,$AMDEPBACKSLASH,;t t
-s, at CXXDEPMODE@,$CXXDEPMODE,;t t
-s, at am__fastdepCXX_TRUE@,$am__fastdepCXX_TRUE,;t t
-s, at am__fastdepCXX_FALSE@,$am__fastdepCXX_FALSE,;t t
-s, at CC@,$CC,;t t
-s, at CFLAGS@,$CFLAGS,;t t
-s, at ac_ct_CC@,$ac_ct_CC,;t t
-s, at CCDEPMODE@,$CCDEPMODE,;t t
-s, at am__fastdepCC_TRUE@,$am__fastdepCC_TRUE,;t t
-s, at am__fastdepCC_FALSE@,$am__fastdepCC_FALSE,;t t
-s, at RANLIB@,$RANLIB,;t t
-s, at ac_ct_RANLIB@,$ac_ct_RANLIB,;t t
-s, at PYTHON_VERSION@,$PYTHON_VERSION,;t t
-s, at PYTHON_PREFIX@,$PYTHON_PREFIX,;t t
-s, at PYTHON_EXEC_PREFIX@,$PYTHON_EXEC_PREFIX,;t t
-s, at PYTHON_PLATFORM@,$PYTHON_PLATFORM,;t t
-s, at pythondir@,$pythondir,;t t
-s, at pkgpythondir@,$pkgpythondir,;t t
-s, at pyexecdir@,$pyexecdir,;t t
-s, at pkgpyexecdir@,$pkgpyexecdir,;t t
-s, at BOOST_CPPFLAGS@,$BOOST_CPPFLAGS,;t t
-s, at BOOST_LDFLAGS@,$BOOST_LDFLAGS,;t t
-s, at BAM_CPPFLAGS@,$BAM_CPPFLAGS,;t t
-s, at BAM_LDFLAGS@,$BAM_LDFLAGS,;t t
-s, at BAM_LIB@,$BAM_LIB,;t t
-s, at build@,$build,;t t
-s, at build_cpu@,$build_cpu,;t t
-s, at build_vendor@,$build_vendor,;t t
-s, at build_os@,$build_os,;t t
-s, at BOOST_SYSTEM_LIB@,$BOOST_SYSTEM_LIB,;t t
-s, at BOOST_SERIALIZATION_LIB@,$BOOST_SERIALIZATION_LIB,;t t
-s, at BOOST_THREAD_LIB@,$BOOST_THREAD_LIB,;t t
-s, at CPP@,$CPP,;t t
-s, at EGREP@,$EGREP,;t t
-s, at ZLIB@,$ZLIB,;t t
-s, at EIGEN_CPPFLAGS@,$EIGEN_CPPFLAGS,;t t
-s, at host@,$host,;t t
-s, at host_cpu@,$host_cpu,;t t
-s, at host_vendor@,$host_vendor,;t t
-s, at host_os@,$host_os,;t t
-s, at LIBOBJS@,$LIBOBJS,;t t
-s, at LTLIBOBJS@,$LTLIBOBJS,;t t
-CEOF
-
-_ACEOF
-
- cat >>$CONFIG_STATUS <<\_ACEOF
- # Split the substitutions into bite-sized pieces for seds with
- # small command number limits, like on Digital OSF/1 and HP-UX.
- ac_max_sed_lines=48
- ac_sed_frag=1 # Number of current file.
- ac_beg=1 # First line for current file.
- ac_end=$ac_max_sed_lines # Line after last line for current file.
- ac_more_lines=:
- ac_sed_cmds=
- while $ac_more_lines; do
- if test $ac_beg -gt 1; then
- sed "1,${ac_beg}d; ${ac_end}q" $tmp/subs.sed >$tmp/subs.frag
- else
- sed "${ac_end}q" $tmp/subs.sed >$tmp/subs.frag
- fi
- if test ! -s $tmp/subs.frag; then
- ac_more_lines=false
- else
- # The purpose of the label and of the branching condition is to
- # speed up the sed processing (if there are no `@' at all, there
- # is no need to browse any of the substitutions).
- # These are the two extra sed commands mentioned above.
- (echo ':t
- /@[a-zA-Z_][a-zA-Z_0-9]*@/!b' && cat $tmp/subs.frag) >$tmp/subs-$ac_sed_frag.sed
- if test -z "$ac_sed_cmds"; then
- ac_sed_cmds="sed -f $tmp/subs-$ac_sed_frag.sed"
- else
- ac_sed_cmds="$ac_sed_cmds | sed -f $tmp/subs-$ac_sed_frag.sed"
- fi
- ac_sed_frag=`expr $ac_sed_frag + 1`
- ac_beg=$ac_end
- ac_end=`expr $ac_end + $ac_max_sed_lines`
- fi
- done
- if test -z "$ac_sed_cmds"; then
- ac_sed_cmds=cat
+ ac_delim_n=`sed -n "s/.*$ac_delim\$/X/p" conf$$subs.awk | grep -c X`
+ if test $ac_delim_n = $ac_delim_num; then
+ break
+ elif $ac_last_try; then
+ { { $as_echo "$as_me:$LINENO: error: could not make $CONFIG_STATUS" >&5
+$as_echo "$as_me: error: could not make $CONFIG_STATUS" >&2;}
+ { (exit 1); exit 1; }; }
+ else
+ ac_delim="$ac_delim!$ac_delim _$ac_delim!! "
fi
+done
+rm -f conf$$subs.sh
+
+cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
+cat >>"\$tmp/subs1.awk" <<\\_ACAWK &&
+_ACEOF
+sed -n '
+h
+s/^/S["/; s/!.*/"]=/
+p
+g
+s/^[^!]*!//
+:repl
+t repl
+s/'"$ac_delim"'$//
+t delim
+:nl
+h
+s/\(.\{148\}\).*/\1/
+t more1
+s/["\\]/\\&/g; s/^/"/; s/$/\\n"\\/
+p
+n
+b repl
+:more1
+s/["\\]/\\&/g; s/^/"/; s/$/"\\/
+p
+g
+s/.\{148\}//
+t nl
+:delim
+h
+s/\(.\{148\}\).*/\1/
+t more2
+s/["\\]/\\&/g; s/^/"/; s/$/"/
+p
+b
+:more2
+s/["\\]/\\&/g; s/^/"/; s/$/"\\/
+p
+g
+s/.\{148\}//
+t delim
+' <conf$$subs.awk | sed '
+/^[^""]/{
+ N
+ s/\n//
+}
+' >>$CONFIG_STATUS || ac_write_fail=1
+rm -f conf$$subs.awk
+cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
+_ACAWK
+cat >>"\$tmp/subs1.awk" <<_ACAWK &&
+ for (key in S) S_is_set[key] = 1
+ FS = ""
+
+}
+{
+ line = $ 0
+ nfields = split(line, field, "@")
+ substed = 0
+ len = length(field[1])
+ for (i = 2; i < nfields; i++) {
+ key = field[i]
+ keylen = length(key)
+ if (S_is_set[key]) {
+ value = S[key]
+ line = substr(line, 1, len) "" value "" substr(line, len + keylen + 3)
+ len += length(value) + length(field[++i])
+ substed = 1
+ } else
+ len += 1 + keylen
+ }
+
+ print line
+}
+
+_ACAWK
+_ACEOF
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
+if sed "s/$ac_cr//" < /dev/null > /dev/null 2>&1; then
+ sed "s/$ac_cr\$//; s/$ac_cr/$ac_cs_awk_cr/g"
+else
+ cat
+fi < "$tmp/subs1.awk" > "$tmp/subs.awk" \
+ || { { $as_echo "$as_me:$LINENO: error: could not setup config files machinery" >&5
+$as_echo "$as_me: error: could not setup config files machinery" >&2;}
+ { (exit 1); exit 1; }; }
+_ACEOF
+
+# VPATH may cause trouble with some makes, so we remove $(srcdir),
+# ${srcdir} and @srcdir@ from VPATH if srcdir is ".", strip leading and
+# trailing colons and then remove the whole line if VPATH becomes empty
+# (actually we leave an empty line to preserve line numbers).
+if test "x$srcdir" = x.; then
+ ac_vpsub='/^[ ]*VPATH[ ]*=/{
+s/:*\$(srcdir):*/:/
+s/:*\${srcdir}:*/:/
+s/:*@srcdir@:*/:/
+s/^\([^=]*=[ ]*\):*/\1/
+s/:*$//
+s/^[^=]*=[ ]*$//
+}'
+fi
+
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
fi # test -n "$CONFIG_FILES"
+# Set up the scripts for CONFIG_HEADERS section.
+# No need to generate them if there are no CONFIG_HEADERS.
+# This happens for instance with `./config.status Makefile'.
+if test -n "$CONFIG_HEADERS"; then
+cat >"$tmp/defines.awk" <<\_ACAWK ||
+BEGIN {
_ACEOF
-cat >>$CONFIG_STATUS <<\_ACEOF
-for ac_file in : $CONFIG_FILES; do test "x$ac_file" = x: && continue
- # Support "outfile[:infile[:infile...]]", defaulting infile="outfile.in".
- case $ac_file in
- - | *:- | *:-:* ) # input from stdin
- cat >$tmp/stdin
- ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
- ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
- *:* ) ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
- ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
- * ) ac_file_in=$ac_file.in ;;
+
+# Transform confdefs.h into an awk script `defines.awk', embedded as
+# here-document in config.status, that substitutes the proper values into
+# config.h.in to produce config.h.
+
+# Create a delimiter string that does not exist in confdefs.h, to ease
+# handling of long lines.
+ac_delim='%!_!# '
+for ac_last_try in false false :; do
+ ac_t=`sed -n "/$ac_delim/p" confdefs.h`
+ if test -z "$ac_t"; then
+ break
+ elif $ac_last_try; then
+ { { $as_echo "$as_me:$LINENO: error: could not make $CONFIG_HEADERS" >&5
+$as_echo "$as_me: error: could not make $CONFIG_HEADERS" >&2;}
+ { (exit 1); exit 1; }; }
+ else
+ ac_delim="$ac_delim!$ac_delim _$ac_delim!! "
+ fi
+done
+
+# For the awk script, D is an array of macro values keyed by name,
+# likewise P contains macro parameters if any. Preserve backslash
+# newline sequences.
+
+ac_word_re=[_$as_cr_Letters][_$as_cr_alnum]*
+sed -n '
+s/.\{148\}/&'"$ac_delim"'/g
+t rset
+:rset
+s/^[ ]*#[ ]*define[ ][ ]*/ /
+t def
+d
+:def
+s/\\$//
+t bsnl
+s/["\\]/\\&/g
+s/^ \('"$ac_word_re"'\)\(([^()]*)\)[ ]*\(.*\)/P["\1"]="\2"\
+D["\1"]=" \3"/p
+s/^ \('"$ac_word_re"'\)[ ]*\(.*\)/D["\1"]=" \2"/p
+d
+:bsnl
+s/["\\]/\\&/g
+s/^ \('"$ac_word_re"'\)\(([^()]*)\)[ ]*\(.*\)/P["\1"]="\2"\
+D["\1"]=" \3\\\\\\n"\\/p
+t cont
+s/^ \('"$ac_word_re"'\)[ ]*\(.*\)/D["\1"]=" \2\\\\\\n"\\/p
+t cont
+d
+:cont
+n
+s/.\{148\}/&'"$ac_delim"'/g
+t clear
+:clear
+s/\\$//
+t bsnlc
+s/["\\]/\\&/g; s/^/"/; s/$/"/p
+d
+:bsnlc
+s/["\\]/\\&/g; s/^/"/; s/$/\\\\\\n"\\/p
+b cont
+' <confdefs.h | sed '
+s/'"$ac_delim"'/"\\\
+"/g' >>$CONFIG_STATUS || ac_write_fail=1
+
+cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
+ for (key in D) D_is_set[key] = 1
+ FS = ""
+}
+/^[\t ]*#[\t ]*(define|undef)[\t ]+$ac_word_re([\t (]|\$)/ {
+ line = \$ 0
+ split(line, arg, " ")
+ if (arg[1] == "#") {
+ defundef = arg[2]
+ mac1 = arg[3]
+ } else {
+ defundef = substr(arg[1], 2)
+ mac1 = arg[2]
+ }
+ split(mac1, mac2, "(") #)
+ macro = mac2[1]
+ prefix = substr(line, 1, index(line, defundef) - 1)
+ if (D_is_set[macro]) {
+ # Preserve the white space surrounding the "#".
+ print prefix "define", macro P[macro] D[macro]
+ next
+ } else {
+ # Replace #undef with comments. This is necessary, for example,
+ # in the case of _POSIX_SOURCE, which is predefined and required
+ # on some systems where configure will not decide to define it.
+ if (defundef == "undef") {
+ print "/*", prefix defundef, macro, "*/"
+ next
+ }
+ }
+}
+{ print }
+_ACAWK
+_ACEOF
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
+ { { $as_echo "$as_me:$LINENO: error: could not setup config headers machinery" >&5
+$as_echo "$as_me: error: could not setup config headers machinery" >&2;}
+ { (exit 1); exit 1; }; }
+fi # test -n "$CONFIG_HEADERS"
+
+
+eval set X " :F $CONFIG_FILES :H $CONFIG_HEADERS :C $CONFIG_COMMANDS"
+shift
+for ac_tag
+do
+ case $ac_tag in
+ :[FHLC]) ac_mode=$ac_tag; continue;;
esac
+ case $ac_mode$ac_tag in
+ :[FHL]*:*);;
+ :L* | :C*:*) { { $as_echo "$as_me:$LINENO: error: invalid tag $ac_tag" >&5
+$as_echo "$as_me: error: invalid tag $ac_tag" >&2;}
+ { (exit 1); exit 1; }; };;
+ :[FH]-) ac_tag=-:-;;
+ :[FH]*) ac_tag=$ac_tag:$ac_tag.in;;
+ esac
+ ac_save_IFS=$IFS
+ IFS=:
+ set x $ac_tag
+ IFS=$ac_save_IFS
+ shift
+ ac_file=$1
+ shift
- # Compute @srcdir@, @top_srcdir@, and @INSTALL@ for subdirectories.
- ac_dir=`(dirname "$ac_file") 2>/dev/null ||
+ case $ac_mode in
+ :L) ac_source=$1;;
+ :[FH])
+ ac_file_inputs=
+ for ac_f
+ do
+ case $ac_f in
+ -) ac_f="$tmp/stdin";;
+ *) # Look for the file first in the build tree, then in the source tree
+ # (if the path is not absolute). The absolute path cannot be DOS-style,
+ # because $ac_f cannot contain `:'.
+ test -f "$ac_f" ||
+ case $ac_f in
+ [\\/$]*) false;;
+ *) test -f "$srcdir/$ac_f" && ac_f="$srcdir/$ac_f";;
+ esac ||
+ { { $as_echo "$as_me:$LINENO: error: cannot find input file: $ac_f" >&5
+$as_echo "$as_me: error: cannot find input file: $ac_f" >&2;}
+ { (exit 1); exit 1; }; };;
+ esac
+ case $ac_f in *\'*) ac_f=`$as_echo "$ac_f" | sed "s/'/'\\\\\\\\''/g"`;; esac
+ ac_file_inputs="$ac_file_inputs '$ac_f'"
+ done
+
+ # Let's still pretend it is `configure' which instantiates (i.e., don't
+ # use $as_me), people would be surprised to read:
+ # /* config.h. Generated by config.status. */
+ configure_input='Generated from '`
+ $as_echo "$*" | sed 's|^[^:]*/||;s|:[^:]*/|, |g'
+ `' by configure.'
+ if test x"$ac_file" != x-; then
+ configure_input="$ac_file. $configure_input"
+ { $as_echo "$as_me:$LINENO: creating $ac_file" >&5
+$as_echo "$as_me: creating $ac_file" >&6;}
+ fi
+ # Neutralize special characters interpreted by sed in replacement strings.
+ case $configure_input in #(
+ *\&* | *\|* | *\\* )
+ ac_sed_conf_input=`$as_echo "$configure_input" |
+ sed 's/[\\\\&|]/\\\\&/g'`;; #(
+ *) ac_sed_conf_input=$configure_input;;
+ esac
+
+ case $ac_tag in
+ *:-:* | *:-) cat >"$tmp/stdin" \
+ || { { $as_echo "$as_me:$LINENO: error: could not create $ac_file" >&5
+$as_echo "$as_me: error: could not create $ac_file" >&2;}
+ { (exit 1); exit 1; }; } ;;
+ esac
+ ;;
+ esac
+
+ ac_dir=`$as_dirname -- "$ac_file" ||
$as_expr X"$ac_file" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
X"$ac_file" : 'X\(//\)[^/]' \| \
X"$ac_file" : 'X\(//\)$' \| \
- X"$ac_file" : 'X\(/\)' \| \
- . : '\(.\)' 2>/dev/null ||
-echo X"$ac_file" |
- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
- /^X\(\/\/\)$/{ s//\1/; q; }
- /^X\(\/\).*/{ s//\1/; q; }
- s/.*/./; q'`
- { if $as_mkdir_p; then
- mkdir -p "$ac_dir"
- else
- as_dir="$ac_dir"
+ X"$ac_file" : 'X\(/\)' \| . 2>/dev/null ||
+$as_echo X"$ac_file" |
+ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)[^/].*/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\).*/{
+ s//\1/
+ q
+ }
+ s/.*/./; q'`
+ { as_dir="$ac_dir"
+ case $as_dir in #(
+ -*) as_dir=./$as_dir;;
+ esac
+ test -d "$as_dir" || { $as_mkdir_p && mkdir -p "$as_dir"; } || {
as_dirs=
- while test ! -d "$as_dir"; do
- as_dirs="$as_dir $as_dirs"
- as_dir=`(dirname "$as_dir") 2>/dev/null ||
+ while :; do
+ case $as_dir in #(
+ *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
+ *) as_qdir=$as_dir;;
+ esac
+ as_dirs="'$as_qdir' $as_dirs"
+ as_dir=`$as_dirname -- "$as_dir" ||
$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
X"$as_dir" : 'X\(//\)[^/]' \| \
X"$as_dir" : 'X\(//\)$' \| \
- X"$as_dir" : 'X\(/\)' \| \
- . : '\(.\)' 2>/dev/null ||
-echo X"$as_dir" |
- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
- /^X\(\/\/\)$/{ s//\1/; q; }
- /^X\(\/\).*/{ s//\1/; q; }
- s/.*/./; q'`
+ X"$as_dir" : 'X\(/\)' \| . 2>/dev/null ||
+$as_echo X"$as_dir" |
+ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)[^/].*/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\).*/{
+ s//\1/
+ q
+ }
+ s/.*/./; q'`
+ test -d "$as_dir" && break
done
- test ! -n "$as_dirs" || mkdir $as_dirs
- fi || { { echo "$as_me:$LINENO: error: cannot create directory \"$ac_dir\"" >&5
-echo "$as_me: error: cannot create directory \"$ac_dir\"" >&2;}
+ test -z "$as_dirs" || eval "mkdir $as_dirs"
+ } || test -d "$as_dir" || { { $as_echo "$as_me:$LINENO: error: cannot create directory $as_dir" >&5
+$as_echo "$as_me: error: cannot create directory $as_dir" >&2;}
{ (exit 1); exit 1; }; }; }
-
ac_builddir=.
-if test "$ac_dir" != .; then
- ac_dir_suffix=/`echo "$ac_dir" | sed 's,^\.[\\/],,'`
- # A "../" for each directory in $ac_dir_suffix.
- ac_top_builddir=`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,../,g'`
-else
- ac_dir_suffix= ac_top_builddir=
-fi
+case "$ac_dir" in
+.) ac_dir_suffix= ac_top_builddir_sub=. ac_top_build_prefix= ;;
+*)
+ ac_dir_suffix=/`$as_echo "$ac_dir" | sed 's|^\.[\\/]||'`
+ # A ".." for each directory in $ac_dir_suffix.
+ ac_top_builddir_sub=`$as_echo "$ac_dir_suffix" | sed 's|/[^\\/]*|/..|g;s|/||'`
+ case $ac_top_builddir_sub in
+ "") ac_top_builddir_sub=. ac_top_build_prefix= ;;
+ *) ac_top_build_prefix=$ac_top_builddir_sub/ ;;
+ esac ;;
+esac
+ac_abs_top_builddir=$ac_pwd
+ac_abs_builddir=$ac_pwd$ac_dir_suffix
+# for backward compatibility:
+ac_top_builddir=$ac_top_build_prefix
case $srcdir in
- .) # No --srcdir option. We are building in place.
+ .) # We are building in place.
ac_srcdir=.
- if test -z "$ac_top_builddir"; then
- ac_top_srcdir=.
- else
- ac_top_srcdir=`echo $ac_top_builddir | sed 's,/$,,'`
- fi ;;
- [\\/]* | ?:[\\/]* ) # Absolute path.
+ ac_top_srcdir=$ac_top_builddir_sub
+ ac_abs_top_srcdir=$ac_pwd ;;
+ [\\/]* | ?:[\\/]* ) # Absolute name.
ac_srcdir=$srcdir$ac_dir_suffix;
- ac_top_srcdir=$srcdir ;;
- *) # Relative path.
- ac_srcdir=$ac_top_builddir$srcdir$ac_dir_suffix
- ac_top_srcdir=$ac_top_builddir$srcdir ;;
+ ac_top_srcdir=$srcdir
+ ac_abs_top_srcdir=$srcdir ;;
+ *) # Relative name.
+ ac_srcdir=$ac_top_build_prefix$srcdir$ac_dir_suffix
+ ac_top_srcdir=$ac_top_build_prefix$srcdir
+ ac_abs_top_srcdir=$ac_pwd/$srcdir ;;
esac
+ac_abs_srcdir=$ac_abs_top_srcdir$ac_dir_suffix
-# Do not use `cd foo && pwd` to compute absolute paths, because
-# the directories may not exist.
-case `pwd` in
-.) ac_abs_builddir="$ac_dir";;
-*)
- case "$ac_dir" in
- .) ac_abs_builddir=`pwd`;;
- [\\/]* | ?:[\\/]* ) ac_abs_builddir="$ac_dir";;
- *) ac_abs_builddir=`pwd`/"$ac_dir";;
- esac;;
-esac
-case $ac_abs_builddir in
-.) ac_abs_top_builddir=${ac_top_builddir}.;;
-*)
- case ${ac_top_builddir}. in
- .) ac_abs_top_builddir=$ac_abs_builddir;;
- [\\/]* | ?:[\\/]* ) ac_abs_top_builddir=${ac_top_builddir}.;;
- *) ac_abs_top_builddir=$ac_abs_builddir/${ac_top_builddir}.;;
- esac;;
-esac
-case $ac_abs_builddir in
-.) ac_abs_srcdir=$ac_srcdir;;
-*)
- case $ac_srcdir in
- .) ac_abs_srcdir=$ac_abs_builddir;;
- [\\/]* | ?:[\\/]* ) ac_abs_srcdir=$ac_srcdir;;
- *) ac_abs_srcdir=$ac_abs_builddir/$ac_srcdir;;
- esac;;
-esac
-case $ac_abs_builddir in
-.) ac_abs_top_srcdir=$ac_top_srcdir;;
-*)
- case $ac_top_srcdir in
- .) ac_abs_top_srcdir=$ac_abs_builddir;;
- [\\/]* | ?:[\\/]* ) ac_abs_top_srcdir=$ac_top_srcdir;;
- *) ac_abs_top_srcdir=$ac_abs_builddir/$ac_top_srcdir;;
- esac;;
-esac
+ case $ac_mode in
+ :F)
+ #
+ # CONFIG_FILE
+ #
case $INSTALL in
[\\/$]* | ?:[\\/]* ) ac_INSTALL=$INSTALL ;;
- *) ac_INSTALL=$ac_top_builddir$INSTALL ;;
+ *) ac_INSTALL=$ac_top_build_prefix$INSTALL ;;
esac
+_ACEOF
- if test x"$ac_file" != x-; then
- { echo "$as_me:$LINENO: creating $ac_file" >&5
-echo "$as_me: creating $ac_file" >&6;}
- rm -f "$ac_file"
- fi
- # Let's still pretend it is `configure' which instantiates (i.e., don't
- # use $as_me), people would be surprised to read:
- # /* config.h. Generated by config.status. */
- if test x"$ac_file" = x-; then
- configure_input=
- else
- configure_input="$ac_file. "
- fi
- configure_input=$configure_input"Generated from `echo $ac_file_in |
- sed 's,.*/,,'` by configure."
-
- # First look for the input files in the build tree, otherwise in the
- # src tree.
- ac_file_inputs=`IFS=:
- for f in $ac_file_in; do
- case $f in
- -) echo $tmp/stdin ;;
- [\\/$]*)
- # Absolute (can't be DOS-style, as IFS=:)
- test -f "$f" || { { echo "$as_me:$LINENO: error: cannot find input file: $f" >&5
-echo "$as_me: error: cannot find input file: $f" >&2;}
- { (exit 1); exit 1; }; }
- echo "$f";;
- *) # Relative
- if test -f "$f"; then
- # Build tree
- echo "$f"
- elif test -f "$srcdir/$f"; then
- # Source tree
- echo "$srcdir/$f"
- else
- # /dev/null tree
- { { echo "$as_me:$LINENO: error: cannot find input file: $f" >&5
-echo "$as_me: error: cannot find input file: $f" >&2;}
- { (exit 1); exit 1; }; }
- fi;;
- esac
- done` || { (exit 1); exit 1; }
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
+# If the template does not know about datarootdir, expand it.
+# FIXME: This hack should be removed a few years after 2.60.
+ac_datarootdir_hack=; ac_datarootdir_seen=
+
+ac_sed_dataroot='
+/datarootdir/ {
+ p
+ q
+}
+/@datadir@/p
+/@docdir@/p
+/@infodir@/p
+/@localedir@/p
+/@mandir@/p
+'
+case `eval "sed -n \"\$ac_sed_dataroot\" $ac_file_inputs"` in
+*datarootdir*) ac_datarootdir_seen=yes;;
+*@datadir@*|*@docdir@*|*@infodir@*|*@localedir@*|*@mandir@*)
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_file_inputs seems to ignore the --datarootdir setting" >&5
+$as_echo "$as_me: WARNING: $ac_file_inputs seems to ignore the --datarootdir setting" >&2;}
+_ACEOF
+cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
+ ac_datarootdir_hack='
+ s&@datadir@&$datadir&g
+ s&@docdir@&$docdir&g
+ s&@infodir@&$infodir&g
+ s&@localedir@&$localedir&g
+ s&@mandir@&$mandir&g
+ s&\\\${datarootdir}&$datarootdir&g' ;;
+esac
_ACEOF
-cat >>$CONFIG_STATUS <<_ACEOF
- sed "$ac_vpsub
+
+# Neutralize VPATH when `$srcdir' = `.'.
+# Shell code in configure.ac might set extrasub.
+# FIXME: do we really want to maintain this feature?
+cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
+ac_sed_extra="$ac_vpsub
$extrasub
_ACEOF
-cat >>$CONFIG_STATUS <<\_ACEOF
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
:t
/@[a-zA-Z_][a-zA-Z_0-9]*@/!b
-s, at configure_input@,$configure_input,;t t
-s, at srcdir@,$ac_srcdir,;t t
-s, at abs_srcdir@,$ac_abs_srcdir,;t t
-s, at top_srcdir@,$ac_top_srcdir,;t t
-s, at abs_top_srcdir@,$ac_abs_top_srcdir,;t t
-s, at builddir@,$ac_builddir,;t t
-s, at abs_builddir@,$ac_abs_builddir,;t t
-s, at top_builddir@,$ac_top_builddir,;t t
-s, at abs_top_builddir@,$ac_abs_top_builddir,;t t
-s, at INSTALL@,$ac_INSTALL,;t t
-" $ac_file_inputs | (eval "$ac_sed_cmds") >$tmp/out
- rm -f $tmp/stdin
- if test x"$ac_file" != x-; then
- mv $tmp/out $ac_file
- else
- cat $tmp/out
- rm -f $tmp/out
- fi
-
-done
-_ACEOF
-cat >>$CONFIG_STATUS <<\_ACEOF
+s|@configure_input@|$ac_sed_conf_input|;t t
+s&@top_builddir@&$ac_top_builddir_sub&;t t
+s&@top_build_prefix@&$ac_top_build_prefix&;t t
+s&@srcdir@&$ac_srcdir&;t t
+s&@abs_srcdir@&$ac_abs_srcdir&;t t
+s&@top_srcdir@&$ac_top_srcdir&;t t
+s&@abs_top_srcdir@&$ac_abs_top_srcdir&;t t
+s&@builddir@&$ac_builddir&;t t
+s&@abs_builddir@&$ac_abs_builddir&;t t
+s&@abs_top_builddir@&$ac_abs_top_builddir&;t t
+s&@INSTALL@&$ac_INSTALL&;t t
+$ac_datarootdir_hack
+"
+eval sed \"\$ac_sed_extra\" "$ac_file_inputs" | $AWK -f "$tmp/subs.awk" >$tmp/out \
+ || { { $as_echo "$as_me:$LINENO: error: could not create $ac_file" >&5
+$as_echo "$as_me: error: could not create $ac_file" >&2;}
+ { (exit 1); exit 1; }; }
-#
-# CONFIG_HEADER section.
-#
+test -z "$ac_datarootdir_hack$ac_datarootdir_seen" &&
+ { ac_out=`sed -n '/\${datarootdir}/p' "$tmp/out"`; test -n "$ac_out"; } &&
+ { ac_out=`sed -n '/^[ ]*datarootdir[ ]*:*=/p' "$tmp/out"`; test -z "$ac_out"; } &&
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_file contains a reference to the variable \`datarootdir'
+which seems to be undefined. Please make sure it is defined." >&5
+$as_echo "$as_me: WARNING: $ac_file contains a reference to the variable \`datarootdir'
+which seems to be undefined. Please make sure it is defined." >&2;}
-# These sed commands are passed to sed as "A NAME B NAME C VALUE D", where
-# NAME is the cpp macro being defined and VALUE is the value it is being given.
-#
-# ac_d sets the value in "#define NAME VALUE" lines.
-ac_dA='s,^\([ ]*\)#\([ ]*define[ ][ ]*\)'
-ac_dB='[ ].*$,\1#\2'
-ac_dC=' '
-ac_dD=',;t'
-# ac_u turns "#undef NAME" without trailing blanks into "#define NAME VALUE".
-ac_uA='s,^\([ ]*\)#\([ ]*\)undef\([ ][ ]*\)'
-ac_uB='$,\1#\2define\3'
-ac_uC=' '
-ac_uD=',;t'
-
-for ac_file in : $CONFIG_HEADERS; do test "x$ac_file" = x: && continue
- # Support "outfile[:infile[:infile...]]", defaulting infile="outfile.in".
+ rm -f "$tmp/stdin"
case $ac_file in
- - | *:- | *:-:* ) # input from stdin
- cat >$tmp/stdin
- ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
- ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
- *:* ) ac_file_in=`echo "$ac_file" | sed 's,[^:]*:,,'`
- ac_file=`echo "$ac_file" | sed 's,:.*,,'` ;;
- * ) ac_file_in=$ac_file.in ;;
- esac
-
- test x"$ac_file" != x- && { echo "$as_me:$LINENO: creating $ac_file" >&5
-echo "$as_me: creating $ac_file" >&6;}
-
- # First look for the input files in the build tree, otherwise in the
- # src tree.
- ac_file_inputs=`IFS=:
- for f in $ac_file_in; do
- case $f in
- -) echo $tmp/stdin ;;
- [\\/$]*)
- # Absolute (can't be DOS-style, as IFS=:)
- test -f "$f" || { { echo "$as_me:$LINENO: error: cannot find input file: $f" >&5
-echo "$as_me: error: cannot find input file: $f" >&2;}
+ -) cat "$tmp/out" && rm -f "$tmp/out";;
+ *) rm -f "$ac_file" && mv "$tmp/out" "$ac_file";;
+ esac \
+ || { { $as_echo "$as_me:$LINENO: error: could not create $ac_file" >&5
+$as_echo "$as_me: error: could not create $ac_file" >&2;}
{ (exit 1); exit 1; }; }
- # Do quote $f, to prevent DOS paths from being IFS'd.
- echo "$f";;
- *) # Relative
- if test -f "$f"; then
- # Build tree
- echo "$f"
- elif test -f "$srcdir/$f"; then
- # Source tree
- echo "$srcdir/$f"
- else
- # /dev/null tree
- { { echo "$as_me:$LINENO: error: cannot find input file: $f" >&5
-echo "$as_me: error: cannot find input file: $f" >&2;}
- { (exit 1); exit 1; }; }
- fi;;
- esac
- done` || { (exit 1); exit 1; }
- # Remove the trailing spaces.
- sed 's/[ ]*$//' $ac_file_inputs >$tmp/in
-
-_ACEOF
-
-# Transform confdefs.h into two sed scripts, `conftest.defines' and
-# `conftest.undefs', that substitutes the proper values into
-# config.h.in to produce config.h. The first handles `#define'
-# templates, and the second `#undef' templates.
-# And first: Protect against being on the right side of a sed subst in
-# config.status. Protect against being in an unquoted here document
-# in config.status.
-rm -f conftest.defines conftest.undefs
-# Using a here document instead of a string reduces the quoting nightmare.
-# Putting comments in sed scripts is not portable.
-#
-# `end' is used to avoid that the second main sed command (meant for
-# 0-ary CPP macros) applies to n-ary macro definitions.
-# See the Autoconf documentation for `clear'.
-cat >confdef2sed.sed <<\_ACEOF
-s/[\\&,]/\\&/g
-s,[\\$`],\\&,g
-t clear
-: clear
-s,^[ ]*#[ ]*define[ ][ ]*\([^ (][^ (]*\)\(([^)]*)\)[ ]*\(.*\)$,${ac_dA}\1${ac_dB}\1\2${ac_dC}\3${ac_dD},gp
-t end
-s,^[ ]*#[ ]*define[ ][ ]*\([^ ][^ ]*\)[ ]*\(.*\)$,${ac_dA}\1${ac_dB}\1${ac_dC}\2${ac_dD},gp
-: end
-_ACEOF
-# If some macros were called several times there might be several times
-# the same #defines, which is useless. Nevertheless, we may not want to
-# sort them, since we want the *last* AC-DEFINE to be honored.
-uniq confdefs.h | sed -n -f confdef2sed.sed >conftest.defines
-sed 's/ac_d/ac_u/g' conftest.defines >conftest.undefs
-rm -f confdef2sed.sed
-
-# This sed command replaces #undef with comments. This is necessary, for
-# example, in the case of _POSIX_SOURCE, which is predefined and required
-# on some systems where configure will not decide to define it.
-cat >>conftest.undefs <<\_ACEOF
-s,^[ ]*#[ ]*undef[ ][ ]*[a-zA-Z_][a-zA-Z_0-9]*,/* & */,
-_ACEOF
-
-# Break up conftest.defines because some shells have a limit on the size
-# of here documents, and old seds have small limits too (100 cmds).
-echo ' # Handle all the #define templates only if necessary.' >>$CONFIG_STATUS
-echo ' if grep "^[ ]*#[ ]*define" $tmp/in >/dev/null; then' >>$CONFIG_STATUS
-echo ' # If there are no defines, we may have an empty if/fi' >>$CONFIG_STATUS
-echo ' :' >>$CONFIG_STATUS
-rm -f conftest.tail
-while grep . conftest.defines >/dev/null
-do
- # Write a limited-size here document to $tmp/defines.sed.
- echo ' cat >$tmp/defines.sed <<CEOF' >>$CONFIG_STATUS
- # Speed up: don't consider the non `#define' lines.
- echo '/^[ ]*#[ ]*define/!b' >>$CONFIG_STATUS
- # Work around the forget-to-reset-the-flag bug.
- echo 't clr' >>$CONFIG_STATUS
- echo ': clr' >>$CONFIG_STATUS
- sed ${ac_max_here_lines}q conftest.defines >>$CONFIG_STATUS
- echo 'CEOF
- sed -f $tmp/defines.sed $tmp/in >$tmp/out
- rm -f $tmp/in
- mv $tmp/out $tmp/in
-' >>$CONFIG_STATUS
- sed 1,${ac_max_here_lines}d conftest.defines >conftest.tail
- rm -f conftest.defines
- mv conftest.tail conftest.defines
-done
-rm -f conftest.defines
-echo ' fi # grep' >>$CONFIG_STATUS
-echo >>$CONFIG_STATUS
-
-# Break up conftest.undefs because some shells have a limit on the size
-# of here documents, and old seds have small limits too (100 cmds).
-echo ' # Handle all the #undef templates' >>$CONFIG_STATUS
-rm -f conftest.tail
-while grep . conftest.undefs >/dev/null
-do
- # Write a limited-size here document to $tmp/undefs.sed.
- echo ' cat >$tmp/undefs.sed <<CEOF' >>$CONFIG_STATUS
- # Speed up: don't consider the non `#undef'
- echo '/^[ ]*#[ ]*undef/!b' >>$CONFIG_STATUS
- # Work around the forget-to-reset-the-flag bug.
- echo 't clr' >>$CONFIG_STATUS
- echo ': clr' >>$CONFIG_STATUS
- sed ${ac_max_here_lines}q conftest.undefs >>$CONFIG_STATUS
- echo 'CEOF
- sed -f $tmp/undefs.sed $tmp/in >$tmp/out
- rm -f $tmp/in
- mv $tmp/out $tmp/in
-' >>$CONFIG_STATUS
- sed 1,${ac_max_here_lines}d conftest.undefs >conftest.tail
- rm -f conftest.undefs
- mv conftest.tail conftest.undefs
-done
-rm -f conftest.undefs
-
-cat >>$CONFIG_STATUS <<\_ACEOF
- # Let's still pretend it is `configure' which instantiates (i.e., don't
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- if test x"$ac_file" = x-; then
- echo "/* Generated by configure. */" >$tmp/config.h
- else
- echo "/* $ac_file. Generated by configure. */" >$tmp/config.h
- fi
- cat $tmp/in >>$tmp/config.h
- rm -f $tmp/in
+ ;;
+ :H)
+ #
+ # CONFIG_HEADER
+ #
if test x"$ac_file" != x-; then
- if diff $ac_file $tmp/config.h >/dev/null 2>&1; then
- { echo "$as_me:$LINENO: $ac_file is unchanged" >&5
-echo "$as_me: $ac_file is unchanged" >&6;}
+ {
+ $as_echo "/* $configure_input */" \
+ && eval '$AWK -f "$tmp/defines.awk"' "$ac_file_inputs"
+ } >"$tmp/config.h" \
+ || { { $as_echo "$as_me:$LINENO: error: could not create $ac_file" >&5
+$as_echo "$as_me: error: could not create $ac_file" >&2;}
+ { (exit 1); exit 1; }; }
+ if diff "$ac_file" "$tmp/config.h" >/dev/null 2>&1; then
+ { $as_echo "$as_me:$LINENO: $ac_file is unchanged" >&5
+$as_echo "$as_me: $ac_file is unchanged" >&6;}
else
- ac_dir=`(dirname "$ac_file") 2>/dev/null ||
-$as_expr X"$ac_file" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
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- X"$ac_file" : 'X\(//\)$' \| \
- X"$ac_file" : 'X\(/\)' \| \
- . : '\(.\)' 2>/dev/null ||
-echo X"$ac_file" |
- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
- /^X\(\/\/\)$/{ s//\1/; q; }
- /^X\(\/\).*/{ s//\1/; q; }
- s/.*/./; q'`
- { if $as_mkdir_p; then
- mkdir -p "$ac_dir"
- else
- as_dir="$ac_dir"
- as_dirs=
- while test ! -d "$as_dir"; do
- as_dirs="$as_dir $as_dirs"
- as_dir=`(dirname "$as_dir") 2>/dev/null ||
-$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
- X"$as_dir" : 'X\(//\)[^/]' \| \
- X"$as_dir" : 'X\(//\)$' \| \
- X"$as_dir" : 'X\(/\)' \| \
- . : '\(.\)' 2>/dev/null ||
-echo X"$as_dir" |
- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
- /^X\(\/\/\)$/{ s//\1/; q; }
- /^X\(\/\).*/{ s//\1/; q; }
- s/.*/./; q'`
- done
- test ! -n "$as_dirs" || mkdir $as_dirs
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-echo "$as_me: error: cannot create directory \"$ac_dir\"" >&2;}
- { (exit 1); exit 1; }; }; }
-
- rm -f $ac_file
- mv $tmp/config.h $ac_file
+ rm -f "$ac_file"
+ mv "$tmp/config.h" "$ac_file" \
+ || { { $as_echo "$as_me:$LINENO: error: could not create $ac_file" >&5
+$as_echo "$as_me: error: could not create $ac_file" >&2;}
+ { (exit 1); exit 1; }; }
fi
else
- cat $tmp/config.h
- rm -f $tmp/config.h
+ $as_echo "/* $configure_input */" \
+ && eval '$AWK -f "$tmp/defines.awk"' "$ac_file_inputs" \
+ || { { $as_echo "$as_me:$LINENO: error: could not create -" >&5
+$as_echo "$as_me: error: could not create -" >&2;}
+ { (exit 1); exit 1; }; }
fi
-# Compute $ac_file's index in $config_headers.
+# Compute "$ac_file"'s index in $config_headers.
_am_stamp_count=1
for _am_header in $config_headers :; do
case $_am_header in
- $ac_file | $ac_file:* )
+ "$ac_file" | "$ac_file":* )
break ;;
* )
_am_stamp_count=`expr $_am_stamp_count + 1` ;;
esac
done
-echo "timestamp for $ac_file" >`(dirname $ac_file) 2>/dev/null ||
-$as_expr X$ac_file : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
- X$ac_file : 'X\(//\)[^/]' \| \
- X$ac_file : 'X\(//\)$' \| \
- X$ac_file : 'X\(/\)' \| \
- . : '\(.\)' 2>/dev/null ||
-echo X$ac_file |
- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
- /^X\(\/\/\)$/{ s//\1/; q; }
- /^X\(\/\).*/{ s//\1/; q; }
- s/.*/./; q'`/stamp-h$_am_stamp_count
-done
-_ACEOF
-cat >>$CONFIG_STATUS <<\_ACEOF
-
-#
-# CONFIG_COMMANDS section.
-#
-for ac_file in : $CONFIG_COMMANDS; do test "x$ac_file" = x: && continue
- ac_dest=`echo "$ac_file" | sed 's,:.*,,'`
- ac_source=`echo "$ac_file" | sed 's,[^:]*:,,'`
- ac_dir=`(dirname "$ac_dest") 2>/dev/null ||
-$as_expr X"$ac_dest" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
- X"$ac_dest" : 'X\(//\)[^/]' \| \
- X"$ac_dest" : 'X\(//\)$' \| \
- X"$ac_dest" : 'X\(/\)' \| \
- . : '\(.\)' 2>/dev/null ||
-echo X"$ac_dest" |
- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
- /^X\(\/\/\)$/{ s//\1/; q; }
- /^X\(\/\).*/{ s//\1/; q; }
- s/.*/./; q'`
- { if $as_mkdir_p; then
- mkdir -p "$ac_dir"
- else
- as_dir="$ac_dir"
- as_dirs=
- while test ! -d "$as_dir"; do
- as_dirs="$as_dir $as_dirs"
- as_dir=`(dirname "$as_dir") 2>/dev/null ||
-$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
- X"$as_dir" : 'X\(//\)[^/]' \| \
- X"$as_dir" : 'X\(//\)$' \| \
- X"$as_dir" : 'X\(/\)' \| \
- . : '\(.\)' 2>/dev/null ||
-echo X"$as_dir" |
- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
- /^X\(\/\/\)$/{ s//\1/; q; }
- /^X\(\/\).*/{ s//\1/; q; }
- s/.*/./; q'`
- done
- test ! -n "$as_dirs" || mkdir $as_dirs
- fi || { { echo "$as_me:$LINENO: error: cannot create directory \"$ac_dir\"" >&5
-echo "$as_me: error: cannot create directory \"$ac_dir\"" >&2;}
- { (exit 1); exit 1; }; }; }
-
- ac_builddir=.
-
-if test "$ac_dir" != .; then
- ac_dir_suffix=/`echo "$ac_dir" | sed 's,^\.[\\/],,'`
- # A "../" for each directory in $ac_dir_suffix.
- ac_top_builddir=`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,../,g'`
-else
- ac_dir_suffix= ac_top_builddir=
-fi
-
-case $srcdir in
- .) # No --srcdir option. We are building in place.
- ac_srcdir=.
- if test -z "$ac_top_builddir"; then
- ac_top_srcdir=.
- else
- ac_top_srcdir=`echo $ac_top_builddir | sed 's,/$,,'`
- fi ;;
- [\\/]* | ?:[\\/]* ) # Absolute path.
- ac_srcdir=$srcdir$ac_dir_suffix;
- ac_top_srcdir=$srcdir ;;
- *) # Relative path.
- ac_srcdir=$ac_top_builddir$srcdir$ac_dir_suffix
- ac_top_srcdir=$ac_top_builddir$srcdir ;;
-esac
+echo "timestamp for "$ac_file"" >`$as_dirname -- "$ac_file" ||
+$as_expr X"$ac_file" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
+ X"$ac_file" : 'X\(//\)[^/]' \| \
+ X"$ac_file" : 'X\(//\)$' \| \
+ X"$ac_file" : 'X\(/\)' \| . 2>/dev/null ||
+$as_echo X"$ac_file" |
+ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)[^/].*/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\).*/{
+ s//\1/
+ q
+ }
+ s/.*/./; q'`/stamp-h$_am_stamp_count
+ ;;
-# Do not use `cd foo && pwd` to compute absolute paths, because
-# the directories may not exist.
-case `pwd` in
-.) ac_abs_builddir="$ac_dir";;
-*)
- case "$ac_dir" in
- .) ac_abs_builddir=`pwd`;;
- [\\/]* | ?:[\\/]* ) ac_abs_builddir="$ac_dir";;
- *) ac_abs_builddir=`pwd`/"$ac_dir";;
- esac;;
-esac
-case $ac_abs_builddir in
-.) ac_abs_top_builddir=${ac_top_builddir}.;;
-*)
- case ${ac_top_builddir}. in
- .) ac_abs_top_builddir=$ac_abs_builddir;;
- [\\/]* | ?:[\\/]* ) ac_abs_top_builddir=${ac_top_builddir}.;;
- *) ac_abs_top_builddir=$ac_abs_builddir/${ac_top_builddir}.;;
- esac;;
-esac
-case $ac_abs_builddir in
-.) ac_abs_srcdir=$ac_srcdir;;
-*)
- case $ac_srcdir in
- .) ac_abs_srcdir=$ac_abs_builddir;;
- [\\/]* | ?:[\\/]* ) ac_abs_srcdir=$ac_srcdir;;
- *) ac_abs_srcdir=$ac_abs_builddir/$ac_srcdir;;
- esac;;
-esac
-case $ac_abs_builddir in
-.) ac_abs_top_srcdir=$ac_top_srcdir;;
-*)
- case $ac_top_srcdir in
- .) ac_abs_top_srcdir=$ac_abs_builddir;;
- [\\/]* | ?:[\\/]* ) ac_abs_top_srcdir=$ac_top_srcdir;;
- *) ac_abs_top_srcdir=$ac_abs_builddir/$ac_top_srcdir;;
- esac;;
-esac
+ :C) { $as_echo "$as_me:$LINENO: executing $ac_file commands" >&5
+$as_echo "$as_me: executing $ac_file commands" >&6;}
+ ;;
+ esac
- { echo "$as_me:$LINENO: executing $ac_dest commands" >&5
-echo "$as_me: executing $ac_dest commands" >&6;}
- case $ac_dest in
- depfiles ) test x"$AMDEP_TRUE" != x"" || for mf in $CONFIG_FILES; do
+ case $ac_file$ac_mode in
+ "depfiles":C) test x"$AMDEP_TRUE" != x"" || for mf in $CONFIG_FILES; do
# Strip MF so we end up with the name of the file.
mf=`echo "$mf" | sed -e 's/:.*$//'`
# Check whether this is an Automake generated Makefile or not.
@@ -9694,18 +10653,29 @@ echo "$as_me: executing $ac_dest commands" >&6;}
# each Makefile.in and add a new line on top of each file to say so.
# So let's grep whole file.
if grep '^#.*generated by automake' $mf > /dev/null 2>&1; then
- dirpart=`(dirname "$mf") 2>/dev/null ||
+ dirpart=`$as_dirname -- "$mf" ||
$as_expr X"$mf" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
X"$mf" : 'X\(//\)[^/]' \| \
X"$mf" : 'X\(//\)$' \| \
- X"$mf" : 'X\(/\)' \| \
- . : '\(.\)' 2>/dev/null ||
-echo X"$mf" |
- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
- /^X\(\/\/\)$/{ s//\1/; q; }
- /^X\(\/\).*/{ s//\1/; q; }
- s/.*/./; q'`
+ X"$mf" : 'X\(/\)' \| . 2>/dev/null ||
+$as_echo X"$mf" |
+ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)[^/].*/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\).*/{
+ s//\1/
+ q
+ }
+ s/.*/./; q'`
else
continue
fi
@@ -9727,59 +10697,90 @@ echo X"$mf" |
sed -e 's/\$(DEPDIR)/'"$DEPDIR"'/g' -e 's/\$U/'"$U"'/g'`; do
# Make sure the directory exists.
test -f "$dirpart/$file" && continue
- fdir=`(dirname "$file") 2>/dev/null ||
+ fdir=`$as_dirname -- "$file" ||
$as_expr X"$file" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
X"$file" : 'X\(//\)[^/]' \| \
X"$file" : 'X\(//\)$' \| \
- X"$file" : 'X\(/\)' \| \
- . : '\(.\)' 2>/dev/null ||
-echo X"$file" |
- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
- /^X\(\/\/\)$/{ s//\1/; q; }
- /^X\(\/\).*/{ s//\1/; q; }
- s/.*/./; q'`
- { if $as_mkdir_p; then
- mkdir -p $dirpart/$fdir
- else
- as_dir=$dirpart/$fdir
+ X"$file" : 'X\(/\)' \| . 2>/dev/null ||
+$as_echo X"$file" |
+ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)[^/].*/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\).*/{
+ s//\1/
+ q
+ }
+ s/.*/./; q'`
+ { as_dir=$dirpart/$fdir
+ case $as_dir in #(
+ -*) as_dir=./$as_dir;;
+ esac
+ test -d "$as_dir" || { $as_mkdir_p && mkdir -p "$as_dir"; } || {
as_dirs=
- while test ! -d "$as_dir"; do
- as_dirs="$as_dir $as_dirs"
- as_dir=`(dirname "$as_dir") 2>/dev/null ||
+ while :; do
+ case $as_dir in #(
+ *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
+ *) as_qdir=$as_dir;;
+ esac
+ as_dirs="'$as_qdir' $as_dirs"
+ as_dir=`$as_dirname -- "$as_dir" ||
$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
X"$as_dir" : 'X\(//\)[^/]' \| \
X"$as_dir" : 'X\(//\)$' \| \
- X"$as_dir" : 'X\(/\)' \| \
- . : '\(.\)' 2>/dev/null ||
-echo X"$as_dir" |
- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ s//\1/; q; }
- /^X\(\/\/\)[^/].*/{ s//\1/; q; }
- /^X\(\/\/\)$/{ s//\1/; q; }
- /^X\(\/\).*/{ s//\1/; q; }
- s/.*/./; q'`
+ X"$as_dir" : 'X\(/\)' \| . 2>/dev/null ||
+$as_echo X"$as_dir" |
+ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)[^/].*/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\).*/{
+ s//\1/
+ q
+ }
+ s/.*/./; q'`
+ test -d "$as_dir" && break
done
- test ! -n "$as_dirs" || mkdir $as_dirs
- fi || { { echo "$as_me:$LINENO: error: cannot create directory $dirpart/$fdir" >&5
-echo "$as_me: error: cannot create directory $dirpart/$fdir" >&2;}
+ test -z "$as_dirs" || eval "mkdir $as_dirs"
+ } || test -d "$as_dir" || { { $as_echo "$as_me:$LINENO: error: cannot create directory $as_dir" >&5
+$as_echo "$as_me: error: cannot create directory $as_dir" >&2;}
{ (exit 1); exit 1; }; }; }
-
# echo "creating $dirpart/$file"
echo '# dummy' > "$dirpart/$file"
done
done
;;
+
esac
-done
-_ACEOF
+done # for ac_tag
-cat >>$CONFIG_STATUS <<\_ACEOF
{ (exit 0); exit 0; }
_ACEOF
chmod +x $CONFIG_STATUS
ac_clean_files=$ac_clean_files_save
+test $ac_write_fail = 0 ||
+ { { $as_echo "$as_me:$LINENO: error: write failure creating $CONFIG_STATUS" >&5
+$as_echo "$as_me: error: write failure creating $CONFIG_STATUS" >&2;}
+ { (exit 1); exit 1; }; }
+
# configure is writing to config.log, and then calls config.status.
# config.status does its own redirection, appending to config.log.
@@ -9801,6 +10802,10 @@ if test "$no_create" != yes; then
# would make configure fail if this is the last instruction.
$ac_cs_success || { (exit 1); exit 1; }
fi
+if test -n "$ac_unrecognized_opts" && test "$enable_option_checking" != no; then
+ { $as_echo "$as_me:$LINENO: WARNING: unrecognized options: $ac_unrecognized_opts" >&5
+$as_echo "$as_me: WARNING: unrecognized options: $ac_unrecognized_opts" >&2;}
+fi
# dump some configuration confirmations
echo \
diff --git a/configure.ac b/configure.ac
index ee58080..96ffbac 100755
--- a/configure.ac
+++ b/configure.ac
@@ -7,7 +7,7 @@ m4_include([ax_check_zlib.m4])
m4_include([ax_check_eigen.m4])
define([svnversion], esyscmd([sh -c "svnversion|tr -d '\n'"]))dnl
-AC_INIT([cufflinks], [2.2.0], [cole at cs.umd.edu])
+AC_INIT([cufflinks], [2.2.1], [cole at cs.umd.edu])
AC_DEFINE(SVN_REVISION, "svnversion", [SVN Revision])
AC_CONFIG_SRCDIR([config.h.in])
diff --git a/make_bin.sh b/make_bin.sh
index 32c2e6e..fa2a730 100755
--- a/make_bin.sh
+++ b/make_bin.sh
@@ -10,12 +10,10 @@ echo "packing up $1.tar.gz, using boost in $2, linking against $3 and using BAM
mkdir $1
#make clean
make distclean
-if [[ $(uname) = "Darwin" ]]
-then
+if [[ $(uname) = "Darwin" ]]; then
export CFLAGS="-mmacosx-version-min=10.7 -stdlib=libc++"
export LDFLAGS="-stdlib=libc++"
-elif [ $(uname -m) = "x86_64"]
-then
+elif [[ $(uname -m) = "x86_64" ]]; then
echo "Linking statically on x86_64 (only for gcc 4.5+).."
export LDFLAGS="-static-libgcc -static-libstdc++"
else
diff --git a/src/GBase.cpp b/src/GBase.cpp
index ed117f5..2bfc22f 100644
--- a/src/GBase.cpp
+++ b/src/GBase.cpp
@@ -286,7 +286,7 @@ char* Gsubstr(const char* str, char* from, char* to) {
}
if (to<from) return newEmptyStr();
int newlen=to-from+1;
- char* subs;
+ char* subs=NULL;
GMALLOC(subs, newlen);
memcpy(subs, str, newlen-1);
subs[newlen]='\0';
@@ -412,7 +412,7 @@ char* strchrs(const char* s, const char* chrs) {
char* upCase(const char* str) {
if (str==NULL) return NULL;
int len=strlen(str);
- char* upstr;
+ char* upstr=NULL;
GMALLOC(upstr, len+1);
upstr[len]='\0';
for (int i=0;i<len;i++) upstr[i]=toupper(str[i]);
@@ -422,7 +422,7 @@ char* upCase(const char* str) {
char* loCase(const char* str) {
if (str==NULL) return NULL;
int len=strlen(str);
- char* lostr;
+ char* lostr=NULL;
GMALLOC(lostr, len+1);
lostr[len]='\0';
for (int i=0;i<len;i++) lostr[i]=tolower(str[i]);
@@ -475,7 +475,7 @@ char* rstrfind(const char* str, const char* substr) {
char* strifind(const char* str, const char* substr) {
- // the case insensitive version of strstr -- finding a string within a strin
+ // case insensitive version of strstr -- finding a string within another
int l,i;
if (str==NULL || *str==0) return NULL;
if (substr==NULL || *substr==0) return NULL;
diff --git a/src/GFaSeqGet.h b/src/GFaSeqGet.h
index d655a86..3b2b658 100644
--- a/src/GFaSeqGet.h
+++ b/src/GFaSeqGet.h
@@ -23,6 +23,11 @@ class GSubSeq {
xstart=0;
xlen=0;*/
}
+ void forget() { //forget about pointer data, so we can reuse it
+ sq=NULL;
+ sqstart=0;
+ sqlen=0;
+ }
~GSubSeq() {
GFREE(sq);
}
@@ -86,8 +91,26 @@ class GFaSeqGet {
return subseq(cstart, clen);
}
+ //caller is responsible for deallocating the return string
char* copyRange(uint cstart, uint cend, bool revCmpl=false, bool upCase=false);
+
+ //uncached, read and return allocated buffer
//caller is responsible for deallocating the return string
+ char* fetchSeq(int* retlen=NULL) {
+ int clen=(seq_len>0) ? seq_len : MAX_FASUBSEQ;
+ if (lastsub) { delete lastsub; lastsub=NULL; }
+ subseq(1, clen);
+ if (retlen) *retlen=clen;
+ char* r=lastsub->sq;
+ lastsub->forget();
+ if (clen>0) {
+ r[clen]=0;
+ }
+ else {
+ r=NULL;
+ }
+ return r;
+ }
void loadall(uint32 max_len=0) {
//TODO: better read the whole sequence differently here - line by line
@@ -102,6 +125,7 @@ class GFaSeqGet {
subseq(cstart, clen);
}
int getsublen() { return lastsub!=NULL ? lastsub->sqlen : 0 ; }
+ int getseqlen() { return seq_len; } //known when loaded with GFastaIndex
off_t getseqofs() { return fseqstart; }
int getLineLen() { return line_len; }
int getLineBLen() { return line_blen; }
diff --git a/src/GStr.cpp b/src/GStr.cpp
index 4613fa2..20137af 100644
--- a/src/GStr.cpp
+++ b/src/GStr.cpp
@@ -287,28 +287,37 @@ bool GStr::operator!=(const char *s) const {
return (strcmp(chars(), s) != 0);
}
-GStr& GStr::operator+=(const GStr& s) {
- return append((const char *)s);
+GStr& GStr::append(char c) {
+ char buf[5];
+ sprintf(buf,"%c",c);
+ return append(buf);
}
-GStr& GStr::operator+=(const char* s) {
- return append(s);
+GStr& GStr::append(int i) {
+ char buf[20];
+ sprintf(buf,"%d",i);
+ return append(buf);
}
-GStr& GStr::operator+=(const char c) {
- char buf[4];
- sprintf(buf,"%c",c);
+GStr& GStr::append(uint i) {
+ char buf[20];
+ sprintf(buf,"%u",i);
return append(buf);
}
-GStr& GStr::operator+=(const int i) {
+GStr& GStr::append(long l) {
char buf[20];
- sprintf(buf,"%d",i);
+ sprintf(buf,"%ld",l);
return append(buf);
}
+GStr& GStr::append(unsigned long l) {
+ char buf[20];
+ sprintf(buf,"%lu", l);
+ return append(buf);
+ }
-GStr& GStr::operator+=(const double f) {
+GStr& GStr::append(double f) {
char buf[30];
sprintf(buf,"%f",f);
return append(buf);
diff --git a/src/GStr.h b/src/GStr.h
index e2a89e7..c2598e5 100644
--- a/src/GStr.h
+++ b/src/GStr.h
@@ -59,11 +59,14 @@ class GStr {
bool operator>=(const char* s) const;
bool operator!=(const GStr& s) const;
bool operator!=(const char* s) const;
- GStr& operator+=(const GStr& s);
- GStr& operator+=(const char* s);
- GStr& operator+=(const char c);
- GStr& operator+=(const int i);
- GStr& operator+=(const double f);
+ GStr& operator+=(const GStr& s) { return append(s.chars()); }
+ GStr& operator+=(const char* s) { return append(s); }
+ GStr& operator+=(char c) { return append(c); }
+ GStr& operator+=(int i) { return append(i); }
+ GStr& operator+=(uint i) { return append(i); }
+ GStr& operator+=(long l) { return append(l); }
+ GStr& operator+=(unsigned long l) { return append(l); }
+ GStr& operator+=(double f);
//interface:
public:
int length() const;
@@ -90,6 +93,13 @@ class GStr {
GStr& insert(const char* s, int index = 0);
GStr& append(const char* s);
GStr& append(const GStr& s);
+ GStr& append(char c);
+ GStr& append(int i);
+ GStr& append(long l);
+ GStr& append(double f);
+ GStr& append(uint i);
+ GStr& append(unsigned long l);
+
GStr& upper();
GStr& lower();
GStr& clear();//make empty
diff --git a/src/Makefile.in b/src/Makefile.in
index c066835..b20c0fb 100644
--- a/src/Makefile.in
+++ b/src/Makefile.in
@@ -196,6 +196,7 @@ ECHO_T = @ECHO_T@
EGREP = @EGREP@
EIGEN_CPPFLAGS = @EIGEN_CPPFLAGS@
EXEEXT = @EXEEXT@
+GREP = @GREP@
INSTALL_DATA = @INSTALL_DATA@
INSTALL_PROGRAM = @INSTALL_PROGRAM@
INSTALL_SCRIPT = @INSTALL_SCRIPT@
@@ -226,8 +227,6 @@ VERSION = @VERSION@
ZLIB = @ZLIB@
ac_ct_CC = @ac_ct_CC@
ac_ct_CXX = @ac_ct_CXX@
-ac_ct_RANLIB = @ac_ct_RANLIB@
-ac_ct_STRIP = @ac_ct_STRIP@
am__fastdepCC_FALSE = @am__fastdepCC_FALSE@
am__fastdepCC_TRUE = @am__fastdepCC_TRUE@
am__fastdepCXX_FALSE = @am__fastdepCXX_FALSE@
@@ -244,25 +243,32 @@ build_cpu = @build_cpu@
build_os = @build_os@
build_vendor = @build_vendor@
datadir = @datadir@
+datarootdir = @datarootdir@
+docdir = @docdir@
+dvidir = @dvidir@
exec_prefix = @exec_prefix@
host = @host@
host_alias = @host_alias@
host_cpu = @host_cpu@
host_os = @host_os@
host_vendor = @host_vendor@
+htmldir = @htmldir@
includedir = @includedir@
infodir = @infodir@
install_sh = @install_sh@
libdir = @libdir@
libexecdir = @libexecdir@
+localedir = @localedir@
localstatedir = @localstatedir@
mandir = @mandir@
mkdir_p = @mkdir_p@
oldincludedir = @oldincludedir@
+pdfdir = @pdfdir@
pkgpyexecdir = @pkgpyexecdir@
pkgpythondir = @pkgpythondir@
prefix = @prefix@
program_transform_name = @program_transform_name@
+psdir = @psdir@
pyexecdir = @pyexecdir@
pythondir = @pythondir@
sbindir = @sbindir@
diff --git a/src/abundances.cpp b/src/abundances.cpp
index 125a36f..2c386d4 100644
--- a/src/abundances.cpp
+++ b/src/abundances.cpp
@@ -4985,8 +4985,7 @@ void sample_abundance_worker(const string& locus_tag,
cds_analyis(locus_tag, sample);
}
- if (perform_tss_analysis)
- {
+ if (perform_tss_analysis) {
tss_analysis(locus_tag, sample);
}
}
@@ -5004,7 +5003,12 @@ void AbundanceGroup::apply_normalization_to_abundances(const map<boost::shared_p
boost::shared_ptr<const ReadGroupProperties> old_rg_props = *(itr->second->rg_props().begin());
- double fpkm_correction_factor = old_rg_props->normalized_map_mass() / rg_props->normalized_map_mass();
+ double fpkm_correction_factor = 1.0;
+ if (lib_norm_method != ESTIMATED_ABSOLUTE)
+ {
+ fpkm_correction_factor = old_rg_props->normalized_map_mass() / rg_props->normalized_map_mass();
+ }
+
double internal_scale_factor = rg_props->internal_scale_factor();
double total_mass = 0.0;
diff --git a/src/common.cpp b/src/common.cpp
index b82515f..125fca8 100644
--- a/src/common.cpp
+++ b/src/common.cpp
@@ -411,6 +411,7 @@ void init_lib_norm_method_table()
lib_norm_method_table["geometric"] = GEOMETRIC;
lib_norm_method_table["classic-fpkm"] = CLASSIC_FPKM;
lib_norm_method_table["quartile"] = QUARTILE;
+ lib_norm_method_table["estimated-absolute"] = ESTIMATED_ABSOLUTE;
//lib_norm_method_table["tmm"] = TMM;
//lib_norm_method_table["absolute"] = ABSOLUTE;
}
@@ -434,7 +435,10 @@ void print_lib_norm_method_table()
{
fprintf(stderr, "\t%s (default)\n", itr->first.c_str());
}
- else
+ else if(itr->first == "estimated-absolute") // hide this one for now.
+ {
+ continue;
+ }
{
fprintf(stderr, "\t%s\n", itr->first.c_str());
}
diff --git a/src/common.h b/src/common.h
index 55f5341..08757dd 100644
--- a/src/common.h
+++ b/src/common.h
@@ -269,6 +269,7 @@ enum LibNormalizationMethod
CLASSIC_FPKM,
TMM,
QUARTILE,
+ ESTIMATED_ABSOLUTE,
ABSOLUTE // Requires spike-in controls, not yet implemented
};
diff --git a/src/cuffdiff.cpp b/src/cuffdiff.cpp
index 40d4b46..04c8d6d 100644
--- a/src/cuffdiff.cpp
+++ b/src/cuffdiff.cpp
@@ -1146,7 +1146,7 @@ void parse_contrast_file(FILE* contrast_file,
exit(1);
}
size_t f2_idx = f2_itr->second;
- contrasts.push_back(make_pair(f1_idx, f2_idx));
+ contrasts.push_back(make_pair(f2_idx, f1_idx));
}
}
@@ -1977,15 +1977,15 @@ void driver(FILE* ref_gtf, FILE* mask_gtf, FILE* contrast_file, FILE* norm_stand
tests.diff_promoter_tests = vector<vector<SampleDiffs> >(N);
tests.diff_cds_tests = vector<vector<SampleDiffs> >(N);
- for (int i = 1; i < N; ++i)
+ for (int i = 0; i < N; ++i)
{
- tests.isoform_de_tests[i] = vector<SampleDiffs>(i);
- tests.tss_group_de_tests[i] = vector<SampleDiffs>(i);
- tests.gene_de_tests[i] = vector<SampleDiffs>(i);
- tests.cds_de_tests[i] = vector<SampleDiffs>(i);
- tests.diff_splicing_tests[i] = vector<SampleDiffs>(i);
- tests.diff_promoter_tests[i] = vector<SampleDiffs>(i);
- tests.diff_cds_tests[i] = vector<SampleDiffs>(i);
+ tests.isoform_de_tests[i] = vector<SampleDiffs>(N);
+ tests.tss_group_de_tests[i] = vector<SampleDiffs>(N);
+ tests.gene_de_tests[i] = vector<SampleDiffs>(N);
+ tests.cds_de_tests[i] = vector<SampleDiffs>(N);
+ tests.diff_splicing_tests[i] = vector<SampleDiffs>(N);
+ tests.diff_promoter_tests[i] = vector<SampleDiffs>(N);
+ tests.diff_cds_tests[i] = vector<SampleDiffs>(N);
}
final_est_run = true;
@@ -2038,7 +2038,7 @@ void driver(FILE* ref_gtf, FILE* mask_gtf, FILE* contrast_file, FILE* norm_stand
fprintf(outfiles.isoform_de_outfile, "test_id\tgene_id\tgene\tlocus\tsample_1\tsample_2\tstatus\tvalue_1\tvalue_2\tlog2(fold_change)\ttest_stat\tp_value\tq_value\tsignificant\n");
- for (size_t i = 1; i < tests.isoform_de_tests.size(); ++i)
+ for (size_t i = 0; i < tests.isoform_de_tests.size(); ++i)
{
for (size_t j = 0; j < i; ++j)
{
@@ -2050,7 +2050,7 @@ void driver(FILE* ref_gtf, FILE* mask_gtf, FILE* contrast_file, FILE* norm_stand
int iso_exp_tests = fdr_significance(FDR, isoform_exp_diffs);
fprintf(stderr, "Performed %d isoform-level transcription difference tests\n", iso_exp_tests);
- for (size_t i = 1; i < tests.isoform_de_tests.size(); ++i)
+ for (size_t i = 0; i < tests.isoform_de_tests.size(); ++i)
{
for (size_t j = 0; j < i; ++j)
{
@@ -2063,7 +2063,7 @@ void driver(FILE* ref_gtf, FILE* mask_gtf, FILE* contrast_file, FILE* norm_stand
vector<SampleDifference*> tss_group_exp_diffs;
fprintf(outfiles.group_de_outfile, "test_id\tgene_id\tgene\tlocus\tsample_1\tsample_2\tstatus\tvalue_1\tvalue_2\tlog2(fold_change)\ttest_stat\tp_value\tq_value\tsignificant\n");
- for (size_t i = 1; i < tests.tss_group_de_tests.size(); ++i)
+ for (size_t i = 0; i < tests.tss_group_de_tests.size(); ++i)
{
for (size_t j = 0; j < i; ++j)
{
@@ -2075,7 +2075,7 @@ void driver(FILE* ref_gtf, FILE* mask_gtf, FILE* contrast_file, FILE* norm_stand
int tss_group_exp_tests = fdr_significance(FDR, tss_group_exp_diffs);
fprintf(stderr, "Performed %d tss-level transcription difference tests\n", tss_group_exp_tests);
- for (size_t i = 1; i < tests.tss_group_de_tests.size(); ++i)
+ for (size_t i = 0; i < tests.tss_group_de_tests.size(); ++i)
{
for (size_t j = 0; j < i; ++j)
{
@@ -2088,9 +2088,9 @@ void driver(FILE* ref_gtf, FILE* mask_gtf, FILE* contrast_file, FILE* norm_stand
vector<SampleDifference*> gene_exp_diffs;
fprintf(outfiles.gene_de_outfile, "test_id\tgene_id\tgene\tlocus\tsample_1\tsample_2\tstatus\tvalue_1\tvalue_2\tlog2(fold_change)\ttest_stat\tp_value\tq_value\tsignificant\n");
- for (size_t i = 1; i < tests.gene_de_tests.size(); ++i)
+ for (size_t i = 0; i < tests.gene_de_tests.size(); ++i)
{
- for (size_t j = 0; j < i; ++j)
+ for (size_t j = 0; j < tests.gene_de_tests.size(); ++j)
{
total_gene_de_tests += tests.gene_de_tests[i][j].size();
extract_sample_diffs(tests.gene_de_tests[i][j], gene_exp_diffs);
@@ -2101,9 +2101,9 @@ void driver(FILE* ref_gtf, FILE* mask_gtf, FILE* contrast_file, FILE* norm_stand
int gene_exp_tests = fdr_significance(FDR, gene_exp_diffs);
fprintf(stderr, "Performed %d gene-level transcription difference tests\n", gene_exp_tests);
- for (size_t i = 1; i < tests.gene_de_tests.size(); ++i)
+ for (size_t i = 0; i < tests.gene_de_tests.size(); ++i)
{
- for (size_t j = 0; j < i; ++j)
+ for (size_t j = 0; j < tests.gene_de_tests.size(); ++j)
{
print_tests(outfiles.gene_de_outfile, sample_labels[j].c_str(), sample_labels[i].c_str(), tests.gene_de_tests[i][j]);
}
@@ -2115,9 +2115,9 @@ void driver(FILE* ref_gtf, FILE* mask_gtf, FILE* contrast_file, FILE* norm_stand
fprintf(outfiles.cds_de_outfile, "test_id\tgene_id\tgene\tlocus\tsample_1\tsample_2\tstatus\tvalue_1\tvalue_2\tlog2(fold_change)\ttest_stat\tp_value\tq_value\tsignificant\n");
- for (size_t i = 1; i < tests.cds_de_tests.size(); ++i)
+ for (size_t i = 0; i < tests.cds_de_tests.size(); ++i)
{
- for (size_t j = 0; j < i; ++j)
+ for (size_t j = 0; j < tests.cds_de_tests.size(); ++j)
{
total_cds_de_tests += tests.cds_de_tests[i][j].size();
extract_sample_diffs(tests.cds_de_tests[i][j], cds_exp_diffs);
@@ -2128,9 +2128,9 @@ void driver(FILE* ref_gtf, FILE* mask_gtf, FILE* contrast_file, FILE* norm_stand
int cds_exp_tests = fdr_significance(FDR, cds_exp_diffs);
fprintf(stderr, "Performed %d CDS-level transcription difference tests\n", cds_exp_tests);
- for (size_t i = 1; i < tests.cds_de_tests.size(); ++i)
+ for (size_t i = 0; i < tests.cds_de_tests.size(); ++i)
{
- for (size_t j = 0; j < i; ++j)
+ for (size_t j = 0; j < tests.cds_de_tests.size(); ++j)
{
print_tests(outfiles.cds_de_outfile, sample_labels[j].c_str(), sample_labels[i].c_str(), tests.cds_de_tests[i][j]);
}
@@ -2141,9 +2141,9 @@ void driver(FILE* ref_gtf, FILE* mask_gtf, FILE* contrast_file, FILE* norm_stand
vector<SampleDifference*> splicing_diffs;
fprintf(outfiles.diff_splicing_outfile, "test_id\tgene_id\tgene\tlocus\tsample_1\tsample_2\tstatus\tvalue_1\tvalue_2\tsqrt(JS)\ttest_stat\tp_value\tq_value\tsignificant\n");
- for (size_t i = 1; i < tests.diff_splicing_tests.size(); ++i)
+ for (size_t i = 0; i < tests.diff_splicing_tests.size(); ++i)
{
- for (size_t j = 0; j < i; ++j)
+ for (size_t j = 0; j < tests.diff_splicing_tests.size(); ++j)
{
total_diff_splice_tests += tests.diff_splicing_tests[i][j].size();
extract_sample_diffs(tests.diff_splicing_tests[i][j], splicing_diffs);
@@ -2153,9 +2153,9 @@ void driver(FILE* ref_gtf, FILE* mask_gtf, FILE* contrast_file, FILE* norm_stand
int splicing_tests = fdr_significance(FDR, splicing_diffs);
fprintf(stderr, "Performed %d splicing tests\n", splicing_tests);
- for (size_t i = 1; i < tests.diff_splicing_tests.size(); ++i)
+ for (size_t i = 0; i < tests.diff_splicing_tests.size(); ++i)
{
- for (size_t j = 0; j < i; ++j)
+ for (size_t j = 0; j < tests.diff_splicing_tests.size(); ++j)
{
const SampleDiffs& diffs = tests.diff_splicing_tests[i][j];
print_tests(outfiles.diff_splicing_outfile, sample_labels[j].c_str(), sample_labels[i].c_str(), diffs);
@@ -2169,7 +2169,7 @@ void driver(FILE* ref_gtf, FILE* mask_gtf, FILE* contrast_file, FILE* norm_stand
for (size_t i = 1; i < tests.diff_splicing_tests.size(); ++i)
{
- for (size_t j = 0; j < i; ++j)
+ for (size_t j = 0; j < tests.diff_splicing_tests.size(); ++j)
{
total_diff_promoter_tests += tests.diff_promoter_tests[i][j].size();
extract_sample_diffs(tests.diff_promoter_tests[i][j], promoter_diffs);
@@ -2182,7 +2182,7 @@ void driver(FILE* ref_gtf, FILE* mask_gtf, FILE* contrast_file, FILE* norm_stand
for (size_t i = 1; i < tests.diff_promoter_tests.size(); ++i)
{
- for (size_t j = 0; j < i; ++j)
+ for (size_t j = 0; j < tests.diff_promoter_tests.size(); ++j)
{
print_tests(outfiles.diff_promoter_outfile, sample_labels[j].c_str(), sample_labels[i].c_str(), tests.diff_promoter_tests[i][j]);
}
@@ -2194,7 +2194,7 @@ void driver(FILE* ref_gtf, FILE* mask_gtf, FILE* contrast_file, FILE* norm_stand
for (size_t i = 1; i < tests.diff_cds_tests.size(); ++i)
{
- for (size_t j = 0; j < i; ++j)
+ for (size_t j = 0; j < tests.diff_cds_tests.size(); ++j)
{
extract_sample_diffs(tests.diff_cds_tests[i][j], cds_use_diffs);
total_diff_cds_tests += tests.diff_cds_tests[i][j].size();
@@ -2207,7 +2207,7 @@ void driver(FILE* ref_gtf, FILE* mask_gtf, FILE* contrast_file, FILE* norm_stand
for (size_t i = 1; i < tests.diff_cds_tests.size(); ++i)
{
- for (size_t j = 0; j < i; ++j)
+ for (size_t j = 0; j < tests.diff_cds_tests.size(); ++j)
{
print_tests(outfiles.diff_cds_outfile, sample_labels[j].c_str(), sample_labels[i].c_str(), tests.diff_cds_tests[i][j]);
}
diff --git a/src/cuffnorm.cpp b/src/cuffnorm.cpp
index 73f7e75..e27393e 100644
--- a/src/cuffnorm.cpp
+++ b/src/cuffnorm.cpp
@@ -278,7 +278,7 @@ int parse_options(int argc, char** argv)
lib_norm_method_table.find(lib_norm_method_str);
if (lib_norm_itr == lib_norm_method_table.end())
{
- fprintf(stderr, "Error: Dispersion method %s not supported\n", lib_norm_method_str.c_str());
+ fprintf(stderr, "Error: Normalization method %s not supported\n", lib_norm_method_str.c_str());
exit(1);
}
else
@@ -489,14 +489,16 @@ void print_FPKM_simple_table(FILE* fout,
for (size_t j = 0; j != fpkms[i].tracking_info_per_rep.size();
++j)
{
- fprintf(fout, "\t%s_%d", sample_labels[i].c_str(), j);
+ const string& condition_name = fpkms[i].tracking_info_per_rep[j].rg_props->condition_name();
+ int rep_num = fpkms[i].tracking_info_per_rep[j].rg_props->replicate_num();
+ fprintf(fout, "\t%s_%d", condition_name.c_str(), rep_num);
}
}
}
for (FPKMTrackingTable::const_iterator itr = tracking.begin(); itr != tracking.end(); ++itr)
{
const string& description = itr->first;
- fprintf(fout, "\n%s\t", description.c_str());
+ fprintf(fout, "\n%s", description.c_str());
FPKMTrackingTable::const_iterator first_itr = tracking.begin();
if (itr != tracking.end())
{
@@ -530,14 +532,16 @@ void print_count_simple_table(FILE* fout,
for (size_t j = 0; j != fpkms[i].tracking_info_per_rep.size();
++j)
{
- fprintf(fout, "\t%s_%d", sample_labels[i].c_str(), j);
+ const string& condition_name = fpkms[i].tracking_info_per_rep[j].rg_props->condition_name();
+ int rep_num = fpkms[i].tracking_info_per_rep[j].rg_props->replicate_num();
+ fprintf(fout, "\t%s_%d", condition_name.c_str(), rep_num);
}
}
}
for (FPKMTrackingTable::const_iterator itr = tracking.begin(); itr != tracking.end(); ++itr)
{
const string& description = itr->first;
- fprintf(fout, "\n%s\t", description.c_str());
+ fprintf(fout, "\n%s", description.c_str());
FPKMTrackingTable::const_iterator first_itr = tracking.begin();
if (itr != tracking.end())
{
@@ -1101,6 +1105,30 @@ void write_output(const vector<boost::shared_ptr<ReadGroupProperties> >& all_rea
}
}
+void adjust_fpkms_by_median_coverage(const vector<vector<double > >& median_coverage,
+ FPKMTrackingTable& tracking)
+{
+ for (FPKMTrackingTable::iterator itr = tracking.begin(); itr != tracking.end(); ++itr)
+ {
+ if (itr != tracking.end())
+ {
+ FPKMTracking& track = itr->second;
+ vector<FPKMContext>& fpkms = track.fpkm_series;
+
+ for (size_t i = 0; i < fpkms.size(); ++i)
+ {
+ for (size_t j = 0; j != fpkms[i].tracking_info_per_rep.size();
+ ++j)
+ {
+ double& FPKM = fpkms[i].tracking_info_per_rep[j].fpkm;
+ FPKM /= median_coverage[i][j];
+ FPKM *= fpkms[i].tracking_info_per_rep[j].rg_props->normalized_map_mass();
+ FPKM /= 1000000000;
+ }
+ }
+ }
+ }
+}
void driver(FILE* ref_gtf, FILE* mask_gtf, FILE* contrast_file, FILE* norm_standards_file, vector<string>& sam_hit_filename_lists, Outfiles& outfiles)
{
@@ -1362,7 +1390,82 @@ void driver(FILE* ref_gtf, FILE* mask_gtf, FILE* contrast_file, FILE* norm_stand
}
p_bar.complete();
+
+ // If we're using estimated absolute quantification, fly through the FPKMs and adjust them
+ if (lib_norm_method == ESTIMATED_ABSOLUTE)
+ {
+ vector<vector<vector<double > > > coverages;
+ vector<vector<double> > median_coverages;
+
+ FPKMTrackingTable::const_iterator first_itr = tracking.isoform_fpkm_tracking.begin();
+ if (first_itr != tracking.isoform_fpkm_tracking.end())
+ {
+ size_t num_conditions = first_itr->second.fpkm_series.size();
+ coverages = vector<vector<vector<double > > > (num_conditions);
+ median_coverages = vector<vector<double > >(num_conditions);
+
+ for (size_t i = 0; i < num_conditions; ++i)
+ {
+ const vector<FPKMContext>& fpkms = first_itr->second.fpkm_series;
+ size_t num_reps = fpkms[i].tracking_info_per_rep.size();
+ coverages[i] = vector<vector<double> >(num_reps);
+ median_coverages[i] = vector<double>(num_reps);
+ }
+
+ for (FPKMTrackingTable::const_iterator itr = tracking.isoform_fpkm_tracking.begin();
+ itr != tracking.isoform_fpkm_tracking.end(); ++itr)
+ {
+ const FPKMTracking& track = itr->second;
+ const vector<FPKMContext>& fpkms = track.fpkm_series;
+
+ for (size_t i = 0; i < fpkms.size(); ++i)
+ {
+ for (size_t j = 0; j != fpkms[i].tracking_info_per_rep.size();
+ ++j)
+ {
+ //double FPKM = fpkms[i].tracking_info_per_rep[j].fpkm;
+ double count = fpkms[i].tracking_info_per_rep[j].count;
+ double coverage = count/track.length; // FIXME: this should be effective length, not length.
+ if (count >= 1)
+ {
+ coverages[i][j].push_back(coverage);
+ }
+ }
+ }
+ }
+
+ for (size_t i = 0; i < coverages.size(); ++i)
+ {
+ for (size_t j = 0; j < coverages[i].size(); ++j)
+ {
+ vector<double>& cvgs = coverages[i][j];
+ sort(cvgs.begin(), cvgs.end());
+ if (cvgs.empty() == false)
+ {
+ int median_cvgs_idx = cvgs.size() * 0.5;
+ double median_coverage = coverages[i][j][median_cvgs_idx];
+ median_coverages[i][j] = median_coverage;
+ }
+ else
+ {
+ assert(false);
+ median_coverages[i][j] = 1;
+ }
+ }
+ }
+ }
+
+
+ adjust_fpkms_by_median_coverage(median_coverages, tracking.isoform_fpkm_tracking);
+
+ adjust_fpkms_by_median_coverage(median_coverages, tracking.tss_group_fpkm_tracking);
+
+ adjust_fpkms_by_median_coverage(median_coverages, tracking.gene_fpkm_tracking);
+
+ adjust_fpkms_by_median_coverage(median_coverages, tracking.cds_fpkm_tracking);
+ }
+
write_output(all_read_groups, tracking, outfiles);
}
diff --git a/src/cuffquant.cpp b/src/cuffquant.cpp
index 7a52a87..f13a395 100644
--- a/src/cuffquant.cpp
+++ b/src/cuffquant.cpp
@@ -366,7 +366,7 @@ int parse_options(int argc, char** argv)
lib_norm_method_table.find(lib_norm_method_str);
if (lib_norm_itr == lib_norm_method_table.end())
{
- fprintf(stderr, "Error: Dispersion method %s not supported\n", lib_norm_method_str.c_str());
+ fprintf(stderr, "Error: Normalization method %s not supported\n", lib_norm_method_str.c_str());
exit(1);
}
else
diff --git a/src/gff.cpp b/src/gff.cpp
index 1ebc184..17103ff 100644
--- a/src/gff.cpp
+++ b/src/gff.cpp
@@ -1,6 +1,5 @@
#include "gff.h"
-//GffNames* GffReader::names=NULL;
GffNames* GffObj::names=NULL;
//global set of feature names, attribute names etc.
// -- common for all GffObjs in current application!
@@ -206,7 +205,6 @@ GffLine::GffLine(GffReader* reader, const char* l) {
if (strand!='+' && strand!='-' && strand!='.')
GError("Error parsing strand (%c) from GFF line:\n%s\n",strand,l);
phase=*t[7]; // must be '.', '0', '1' or '2'
- ID=NULL;
// exon/CDS/mrna filter
strncpy(fnamelc, ftype, 127);
fnamelc[127]=0;
@@ -251,17 +249,18 @@ GffLine::GffLine(GffReader* reader, const char* l) {
is_t_data=true;
}
-if (reader->transcriptsOnly && !is_t_data) {
- char* id=extractAttr("ID=");
- if (id==NULL) id=extractAttr("transcript_id");
- //GMessage("Discarding non-transcript line:\n%s\n",l);
- if (id!=NULL) {
- reader->discarded_ids.Add(id, new int(1));
- GFREE(id);
+ ID=extractAttr("ID=",true);
+ if (reader->transcriptsOnly && !is_t_data) {
+ if (ID!=NULL) {
+ //in GFF3 ban this unrecognized ID + all its children!
+ if (gff_show_warnings)
+ GMessage("GFF: discarding unrecognized feature \"%s\" ID=%s\n",
+ ftype, ID);
+ reader->discarded_ids.Add(ID, new int(1));
+ GFREE(ID);
}
- return; //skip this line, unwanted feature name
+ return; //skip unrecognized feature
}
- ID=extractAttr("ID=",true);
char* Parent=extractAttr("Parent=",true);
is_gff3=(ID!=NULL || Parent!=NULL);
if (is_gff3) {
@@ -882,9 +881,9 @@ GffLine* GffReader::nextGffLine() {
if (l==NULL) {
return NULL; //end of file
}
-
-
+#ifdef CUFFLINKS
_crc_result.process_bytes( linebuf, llen );
+#endif
int ns=0; //first nonspace position
while (l[ns]!=0 && isspace(l[ns])) ns++;
if (l[ns]=='#' || llen<10) continue;
diff --git a/src/gff.h b/src/gff.h
index 200fa52..db2f87e 100644
--- a/src/gff.h
+++ b/src/gff.h
@@ -1,6 +1,9 @@
#ifndef GFF_H
#define GFF_H
+#define CUFFLINKS 1
+
+
#include "GBase.h"
#include "gdna.h"
#include "codons.h"
@@ -8,7 +11,9 @@
#include "GList.hh"
#include "GHash.hh"
+#ifdef CUFFLINKS
#include <boost/crc.hpp> // for boost::crc_32_type
+#endif
/*
const byte exMskMajSpliceL = 0x01;
@@ -1012,9 +1017,9 @@ class GffReader {
GffObj* promoteFeature(CNonExon* subp, char*& subp_name, GHash<CNonExon>& pex,
bool keepAttr, bool noExonAttr);
GList<GSeqStat> gseqstats; //list of all genomic sequences seen by this reader, accumulates stats
-
+#ifdef CUFFLINKS
boost::crc_32_type _crc_result;
-
+#endif
public:
GffNames* names; //just a pointer to the global static Gff names repository in GffObj
GfList gflst; //accumulate GffObjs being read
@@ -1081,8 +1086,9 @@ class GffReader {
// load all subfeatures, re-group them:
void readAll(bool keepAttr=false, bool mergeCloseExons=false, bool noExonAttr=true);
-
+#ifdef CUFFLINKS
boost::crc_32_type current_crc_result() const { return _crc_result; }
+#endif
}; // end of GffReader
#endif
diff --git a/src/gff_utils.cpp b/src/gff_utils.cpp
index 419b153..b2a10a4 100644
--- a/src/gff_utils.cpp
+++ b/src/gff_utils.cpp
@@ -625,7 +625,19 @@ void GffLoader::load(GList<GenomicSeqData>& seqdata, GFValidateFunc* gf_validate
}
}
if (is_pseudo) continue;
- }
+ //last resort:
+ // scan all the attribute values for "pseudogene" keyword (NCBI does that for "product" attr)
+ if (m->attrs!=NULL) {
+ for (int i=0;i<m->attrs->Count();++i) {
+ GffAttr& a=*(m->attrs->Get(i));
+ if (strifind(a.attr_val, "pseudogene")) {
+ is_pseudo=true;
+ break;
+ }
+ }
+ }
+ if (is_pseudo) continue;
+ } //pseudogene detection requested
char* rloc=m->getAttr("locus");
if (rloc!=NULL && startsWith(rloc, "RLOC_")) {
m->removeAttr("locus", rloc);
diff --git a/src/gtf_tracking.cpp b/src/gtf_tracking.cpp
index 6c27a6f..4d960f7 100644
--- a/src/gtf_tracking.cpp
+++ b/src/gtf_tracking.cpp
@@ -200,8 +200,9 @@ int parse_mRNAs(GfList& mrnas,
bool is_ref_set,
int check_for_dups,
int qfidx, bool only_multiexon) {
- int refdiscarded=0; //ref duplicates discarded
- int tredundant=0; //cufflinks redundant transcripts discarded
+ int tredundant=0; //redundant transcripts discarded
+ int total_kept=0;
+ int total_seen=mrnas.Count();
for (int k=0;k<mrnas.Count();k++) {
GffObj* m=mrnas[k];
int i=-1;
@@ -222,13 +223,14 @@ int parse_mRNAs(GfList& mrnas,
//if (m->exons.Count()==0 && gene_or_locus) {
if (m->isDiscarded()) {
//discard generic "gene" or "locus" features with no other detailed subfeatures
- //if (gtf_tracking_verbose)
- // GMessage("Warning: discarding GFF generic gene/locus container %s\n",m->getID());
+ if (!is_ref_set && gtf_tracking_verbose)
+ GMessage("Warning: discarding non-transfrag (GFF generic gene/locus container?) %s\n",m->getID());
continue;
}
+
if (m->exons.Count()==0) {
- //if (gtf_tracking_verbose)
- // GMessage("Warning: %s %s found without exon segments (adding default exon).\n",m->getFeatureName(), m->getID());
+ if (gtf_tracking_verbose && !is_ref_set)
+ GMessage("Warning: %s %s found without exon segments (adding default exon).\n",m->getFeatureName(), m->getID());
m->addExon(m->start,m->end);
}
if (glstdata.Found(&f,i)) gdata=glstdata[i];
@@ -248,6 +250,7 @@ int parse_mRNAs(GfList& mrnas,
//unknown strand - discard from reference set (!)
continue;
}
+ total_kept++;
target_mrnas=(m->strand=='+') ? &(gdata->mrnas_f) : &(gdata->mrnas_r);
if (check_for_dups) {
//check all gdata->mrnas_r (ref_data) for duplicate ref transcripts
@@ -258,7 +261,8 @@ int parse_mRNAs(GfList& mrnas,
//but let's keep the gene_name if present
//DEBUG:
//GMessage("Ref duplicates: %s = %s\n", rp->getID(), m->getID());
- refdiscarded++;
+ tredundant++;
+ total_kept--;
if (betterDupRef(rp, m)) {
if (rp->getGeneName()==NULL && m->getGeneName()!=NULL) {
rp->setGeneName(m->getGeneName());
@@ -281,26 +285,34 @@ int parse_mRNAs(GfList& mrnas,
if (m->strand=='+') { target_mrnas = &(gdata->mrnas_f); }
else if (m->strand=='-') { target_mrnas=&(gdata->mrnas_r); }
else { m->strand='.'; target_mrnas=&(gdata->umrnas); }
+ total_kept++;
if (check_for_dups) { //check for redundancy
// check if there is a redundancy between this and another already loaded Cufflinks transcript
int cidx = is_Redundant(m, target_mrnas, (check_for_dups>1));
if (cidx>=0) {
//always discard the redundant transcript with the fewer exons OR shorter
- if (t_dominates(target_mrnas->Get(cidx),m)) {
+ tredundant++;
+ total_kept--;
+ if (t_dominates(target_mrnas->Get(cidx),m)) {
//new transcript is shorter, discard it
+ if (gtf_tracking_verbose) {
+ GMessage(" transfrag %s discarded (made redundant by %s)\n", m->getID(), target_mrnas->Get(cidx)->getID());
+ }
continue;
- }
+ }
else {
//discard the older transfrag
+ if (gtf_tracking_verbose) {
+ GMessage(" transfrag %s discarded (made redundant by %s)\n", target_mrnas->Get(cidx)->getID(), m->getID());
+ }
((CTData*)(target_mrnas->Get(cidx)->uptr))->mrna=NULL;
target_mrnas->Get(cidx)->isUsed(false);
target_mrnas->Forget(cidx);
target_mrnas->Delete(cidx);
//the uptr (CTData) pointer will still be kept in gdata->ctdata and deallocated eventually
- }
- tredundant++;
}
- }// redundant transfrag check
+ }
+ }// redundant transfrag check
if (m->gscore==0.0)
m->gscore=m->exons[0]->score; //Cufflinks exon score = isoform abundance
//const char* expr = (gtf_tracking_largeScale) ? m->getAttr("FPKM") : m->exons[0]->getAttr(m->names,"FPKM");
@@ -348,18 +360,34 @@ int parse_mRNAs(GfList& mrnas,
mdata->conf_lo=conf_lo;
}
}//for each mrna read
+ if (gtf_tracking_verbose) {
+ if (is_ref_set)
+ GMessage(" Kept %d ref transcripts out of %d\n", total_kept, total_seen);
+ else
+ GMessage(" Kept %d transfrags out of %d\n", total_kept, total_seen);
+ }
//if (mrna_deleted>0)
// mrnas.Pack();
- return (is_ref_set ? refdiscarded : tredundant);
+ //return (is_ref_set ? refdiscarded : tredundant);
+ return tredundant;
+}
+
+bool singleExonTMatch(GffObj& m, GffObj& r, int& ovlen) {
+ //if (m.exons.Count()>1 || r.exons.Count()>1..)
+ GSeg mseg(m.start, m.end);
+ ovlen=mseg.overlapLen(r.start,r.end);
+ int lmax=GMAX(r.covlen, m.covlen);
+ return ((ovlen >= lmax*0.8) // fuzz matching for single-exon transcripts: 80% of the longer one
+ || (ovlen >= r.covlen*0.9)); // fuzzy reverse-containment - the reference transcript is shorter
}
bool tMatch(GffObj& a, GffObj& b, int& ovlen, bool fuzzunspl, bool contain_only) {
- //strict intron chain match, or single-exon perfect match
+ //strict intron chain match, or single-exon match
int imax=a.exons.Count()-1;
int jmax=b.exons.Count()-1;
ovlen=0;
- if (imax!=jmax) return false; //different number of introns
+ if (imax!=jmax) return false; //different number of exons
if (imax==0) { //single-exon mRNAs
if (contain_only) {
return ((a.start>=b.start && a.end<=b.end) ||
@@ -367,13 +395,14 @@ bool tMatch(GffObj& a, GffObj& b, int& ovlen, bool fuzzunspl, bool contain_only)
}
if (fuzzunspl) {
//fuzz match for single-exon transfrags:
- // it's a match if they overlap at least 80% of shortest one
- ovlen=a.exons[0]->overlapLen(b.exons[0]);
- int maxlen=GMAX(a.covlen,b.covlen);
- return (ovlen>=maxlen*0.8);
+ // it's a match if they overlap at least 80% of longest one
+ //ovlen=a.exons[0]->overlapLen(b.exons[0]);
+ //int maxlen=GMAX(a.covlen,b.covlen);
+ //return (ovlen>=maxlen*0.8);
+ return (singleExonTMatch(a,b,ovlen));
}
else {
- //only exact match, or strictly contained
+ //only exact match
ovlen=a.covlen;
return (a.exons[0]->start==b.exons[0]->start &&
a.exons[0]->end==b.exons[0]->end);
@@ -446,6 +475,7 @@ int fix_umrnas(GSeqData& seqdata, GSeqData* rdata, FILE* fdis=NULL) {
//attempt to find the strand for seqdata.umrnas
//based on a) overlaps with oriented reference mRNAs if present
// b) overlaps with oriented mRNAs from the same input set
+ //int incount=seqdata.umrnas.Count();
if (rdata!=NULL) { //we have reference mrnas
for (int i=0;i<rdata->mrnas_f.Count();i++) {
for (int j=0;j<seqdata.umrnas.Count();j++) {
@@ -488,7 +518,7 @@ int fix_umrnas(GSeqData& seqdata, GSeqData* rdata, FILE* fdis=NULL) {
}
}
}//we have reference transcripts
- //---- now compare to other transcripts
+ //---- now compare to other qry transcripts
for (int i=0;i<seqdata.mrnas_f.Count();i++) {
for (int j=0;j<seqdata.umrnas.Count();j++) {
if (seqdata.umrnas[j]->strand!='.') continue;
@@ -519,25 +549,32 @@ int fix_umrnas(GSeqData& seqdata, GSeqData* rdata, FILE* fdis=NULL) {
}
}
int fcount=0;
+ int fixed=0;
for (int i=0;i<seqdata.umrnas.Count();i++) {
if (seqdata.umrnas[i]->strand=='+') {
seqdata.mrnas_f.Add(seqdata.umrnas[i]);
+ fixed++;
seqdata.umrnas.Forget(i);
}
else if (seqdata.umrnas[i]->strand=='-') {
seqdata.mrnas_r.Add(seqdata.umrnas[i]);
seqdata.umrnas.Forget(i);
+ fixed++;
}
else { //discard mRNAs not settled
- seqdata.umrnas[i]->strand='.';
+ //seqdata.umrnas[i]->strand='.'; ?
if (fdis!=NULL) {
seqdata.umrnas[i]->printGtf(fdis);
}
fcount++;
}
}
+
seqdata.umrnas.Pack();
- return fcount;
+ //if (gtf_tracking_verbose) {
+ // GMessage(" %d out of %d (%d left, %d) unoriented transfrags were assigned a strand based on overlaps.\n", fixed, incount, seqdata.umrnas.Count(), fcount);
+ //}
+ return fixed;
}
//retrieve ref_data for a specific genomic sequence
@@ -550,16 +587,20 @@ GSeqData* getRefData(int gid, GList<GSeqData>& ref_data) {
return r;
}
-void read_transcripts(FILE* f, GList<GSeqData>& seqdata, boost::crc_32_type& crc_result, bool keepAttrs) {
+void read_transcripts(FILE* f, GList<GSeqData>& seqdata,
+#ifdef CUFFLINKS
+ boost::crc_32_type& crc_result,
+#endif
+ bool keepAttrs) {
rewind(f);
GffReader gffr(f, true); //loading only recognizable transcript features
gffr.showWarnings(gtf_tracking_verbose);
// keepAttrs mergeCloseExons noExonAttrs
gffr.readAll(keepAttrs, true, true);
-
- crc_result = gffr.current_crc_result();
-
+#ifdef CUFFLINKS
+ crc_result = gffr.current_crc_result();
+#endif
// is_ref? check_for_dups,
parse_mRNAs(gffr.gflst, seqdata, false, 0);
}
@@ -611,7 +652,9 @@ void read_mRNAs(FILE* f, GList<GSeqData>& seqdata, GList<GSeqData>* ref_data,
#endif
//for each genomic sequence, cluster transcripts
- int discarded=0;
+ int oriented_by_overlap=0;
+ int initial_unoriented=0;
+ int final_unoriented=0;
GStr bname(fname);
GStr s;
if (!bname.is_empty()) {
@@ -629,8 +672,10 @@ void read_mRNAs(FILE* f, GList<GSeqData>& seqdata, GList<GSeqData>* ref_data,
int gseq_id=seqdata[g]->get_gseqid();
if (!isRefData) { //cufflinks data, find corresponding ref data
GSeqData* rdata=getRefData(gseq_id, *ref_data);
- if (rdata!=NULL && seqdata[g]->umrnas.Count()>0) {
- discarded+=fix_umrnas(*seqdata[g], rdata, fdis);
+ initial_unoriented+=seqdata[g]->umrnas.Count();
+ if (seqdata[g]->umrnas.Count()>0) {
+ oriented_by_overlap+=fix_umrnas(*seqdata[g], rdata, fdis);
+ final_unoriented+=seqdata[g]->umrnas.Count();
}
}
//>>>>> group mRNAs into locus-clusters (based on exon overlap)
@@ -653,10 +698,11 @@ void read_mRNAs(FILE* f, GList<GSeqData>& seqdata, GList<GSeqData>* ref_data,
}//for each genomic sequence
if (fdis!=NULL) fclose(fdis);
if (frloci!=NULL) fclose(frloci);
- if (discarded>0) {
- if (gtf_tracking_verbose) GMessage("Found %d transcripts with undetermined strand.\n", discarded);
+ if (initial_unoriented || final_unoriented) {
+ if (gtf_tracking_verbose) GMessage(" Found %d transfrags with undetermined strand (%d out of initial %d were fixed by overlaps)\n",
+ final_unoriented, oriented_by_overlap, initial_unoriented);
}
- else { if (fdis!=NULL) remove(s.chars()); }
+ //if (fdis!=NULL) remove(s.chars()); remove 0-length file
#ifdef HEAPROFILE
if (IsHeapProfilerRunning())
HeapProfilerDump("post_cluster");
diff --git a/src/gtf_tracking.h b/src/gtf_tracking.h
index d883c55..0a9d55c 100644
--- a/src/gtf_tracking.h
+++ b/src/gtf_tracking.h
@@ -2,10 +2,6 @@
#define GTF_TRACKING_H
/*
* gtf_tracking.h
- * cufflinks
- *
- * Created by Cole Trapnell on 9/5/09.
- * Copyright 2009 Geo Pertea. All rights reserved.
*
*/
@@ -18,7 +14,6 @@
#include "GFastaIndex.h"
#include "GStr.h"
-
#define MAX_QFILES 500
extern bool gtf_tracking_verbose;
@@ -1326,11 +1321,19 @@ void read_mRNAs(FILE* f, GList<GSeqData>& seqdata, GList<GSeqData>* ref_data=NUL
int check_for_dups=0, int qfidx=-1, const char* fname=NULL,
bool only_multiexon=false);
-void read_transcripts(FILE* f, GList<GSeqData>& seqdata, boost::crc_32_type& crc_result, bool keepAttrs=true);
+void read_transcripts(FILE* f, GList<GSeqData>& seqdata,
+#ifdef CUFFLINKS
+ boost::crc_32_type& crc_result,
+#endif
+ bool keepAttrs=true);
+
void sort_GSeqs_byName(GList<GSeqData>& seqdata);
+bool singleExonTMatch(GffObj& m, GffObj& r, int& ovlen);
-bool tMatch(GffObj& a, GffObj& b, int& ovlen, bool fuzzunspl=false, bool contain_only=false);
+//strict intron chain match, or single-exon match
+bool tMatch(GffObj& a, GffObj& b, int& ovlen, bool fuzzunspl=false,
+ bool contain_only=false);
//use qsearch to "position" a given coordinate x within a list of transcripts sorted
//by their start (lowest) coordinate; the returned int is the list index of the
diff --git a/src/replicates.cpp b/src/replicates.cpp
index 1227577..544f322 100644
--- a/src/replicates.cpp
+++ b/src/replicates.cpp
@@ -1040,6 +1040,10 @@ void normalize_counts(vector<boost::shared_ptr<ReadGroupProperties> > & all_read
{
calc_tmm_scaling_factors(norm_table, scale_factors);
}
+ else if (lib_norm_method == ESTIMATED_ABSOLUTE)
+ {
+ calc_classic_fpkm_scaling_factors(norm_table, scale_factors);
+ }
else
{
assert (false);
--
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